Pregenerated sensors for LINC01670 (Homo sapiens)
Ensembl gene IDs: ENSG00000279094Ensembl transcript IDs: ENST00000623227.1, ENST00000624261.1, ENST00000624859.3
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GACTTAGATGACAGGCCTGCAGAACTTGGTTCTCTCTATAGTCCCTaGATCAGGCAAAACACACCTTCTTTCCTTCTCCAGCCATGGTCT | + |
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Preference number: 5 (lower is better) Translates to: DLDDRPAELGSLYSP*IRQNTPSFLLQPWS Trigger: AGACCATGGCTGGAGAAGGAAAGAAGGTGTGTTTTGCCTGATTCAGGGACTATAGAGAGAACCAAGTTCTGCAGGCCTGTCATCTAAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000623227.1 ENST00000624261.1 |
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| CDS TCA 90 bp | TTCATGAAAGCCTTGGAATCCAGTTCAGAGTTTGTGACACCCAGCTaGGACTTAGATGACAGGCCTGCAGAACTTGGTTCTCTCTATAGT | + |
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Preference number: 5 (lower is better) Translates to: FMKALESSSEFVTPS*DLDDRPAELGSLYS Trigger: ACTATAGAGAGAACCAAGTTCTGCAGGCCTGTCATCTAAGTCTCAGCTGGGTGTCACAAACTCTGAACTGGATTCCAAGGCTTTCATGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000624261.1 |
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| CDS GCA 90 bp | AGGAAGACATCTTTAGAGGGTAAGCACTTGACCAAGTGGCAAGCTTaGCAATCATGGTCCTCGCTTCAAAACAGAATACTGCCACATCTT | + |
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Preference number: 5 (lower is better) Translates to: RKTSLEGKHLTKWQA*QSWSSLQNRILPHL Trigger: AAGATGTGGCAGTATTCTGTTTTGAAGCGAGGACCATGATTGGCAAGCTTGCCACTTGGTCAAGTGCTTACCCTCTAAAGATGTCTTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000623227.1 ENST00000624859.3 |
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| CDS CCA 90 bp | TCTTTAGAGGGTAAGCACTTGACCAAGTGGCAAGCTTGCCAATCATaGTCCTCGCTTCAAAACAGAATACTGCCACATCTTACTGTAGAC | + |
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Preference number: 5 (lower is better) Translates to: SLEGKHLTKWQACQS*SSLQNRILPHLTVD Trigger: GTCTACAGTAAGATGTGGCAGTATTCTGTTTTGAAGCGAGGACCATGATTGGCAAGCTTGCCACTTGGTCAAGTGCTTACCCTCTAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000623227.1 ENST00000624859.3 |
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| CDS TCA 90 bp | ACACTGCAACAGTCTGTGGAAAACACAAGAGAATTCATACTCACCTaGGACTTAGATGACAGGCCTGCAGAACTTGGTTCTCTCTATAGT | + |
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Preference number: 5 (lower is better) Translates to: TLQQSVENTREFILT*DLDDRPAELGSLYS Trigger: ACTATAGAGAGAACCAAGTTCTGCAGGCCTGTCATCTAAGTCTCAGGTGAGTATGAATTCTCTTGTGTTTTCCACAGACTGTTGCAGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623227.1 |
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| CDS TCA 72 bp | GCCTTGGAATCCAGTTCAGAGTTTGTGACACCCAGCTaGGACTTAGATGACAGGCCTGCAGAACTTGGTTCT | + |
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Preference number: 6 (lower is better) Translates to: ALESSSEFVTPS*DLDDRPAELGS Trigger: AGAACCAAGTTCTGCAGGCCTGTCATCTAAGTCTCAGCTGGGTGTCACAAACTCTGAACTGGATTCCAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000624261.1 |
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| CDS CCA 72 bp | GCCTTGGAATCCAGTTCAGAGTTTGTGACACCCAGCTaGAGGCAAAGACCAAGGAAGACATCTTTAGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: ALESSSEFVTPS*RQRPRKTSLEG Trigger: ACCCTCTAAAGATGTCTTCCTTGGTCTTTGCCTCCAGCTGGGTGTCACAAACTCTGAACTGGATTCCAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623227.1 ENST00000624859.3 |
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| CDS TCA 72 bp | GACAGGCCTGCAGAACTTGGTTCTCTCTATAGTCCCTaGATCAGGCAAAACACACCTTCTTTCCTTCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: DRPAELGSLYSP*IRQNTPSFLLQ Trigger: CTGGAGAAGGAAAGAAGGTGTGTTTTGCCTGATTCAGGGACTATAGAGAGAACCAAGTTCTGCAGGCCTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000623227.1 ENST00000624261.1 |
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| CDS CAA 72 bp | GCTGCCACAGCAAACATAAGTGCATTCATGAAAGCCTaGGAATCCAGTTCAGAGTTTGTGACACCCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: AATANISAFMKA*ESSSEFVTPSW Trigger: CCAGCTGGGTGTCACAAACTCTGAACTGGATTCCAAGGCTTTCATGAATGCACTTATGTTTGCTGTGGCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623227.1 ENST00000624859.3 |
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| CDS CAA 90 bp | CATAATGCAGCTGCCACAGCAAACATAAGTGCATTCATGAAAGCCTaGGAATCCAGTTCAGAGTTTGTGACACCCAGCTGGAGGCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: HNAAATANISAFMKA*ESSSEFVTPSWRQR Trigger: TCTTTGCCTCCAGCTGGGTGTCACAAACTCTGAACTGGATTCCAAGGCTTTCATGAATGCACTTATGTTTGCTGTGGCAGCTGCATTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000623227.1 ENST00000624859.3 |
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| CDS CCA 72 bp | GGTAAGCACTTGACCAAGTGGCAAGCTTGCCAATCATaGTCCTCGCTTCAAAACAGAATACTGCCACATCTT | + |
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Preference number: 6 (lower is better) Translates to: GKHLTKWQACQS*SSLQNRILPHL Trigger: AAGATGTGGCAGTATTCTGTTTTGAAGCGAGGACCATGATTGGCAAGCTTGCCACTTGGTCAAGTGCTTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000623227.1 ENST00000624859.3 |
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| CDS CAA 90 bp | ATACTGCCACATCTTACTGTAGACTTGGCTATAACTCATTTGACCTaGGTCCTGACACTGCAACAGTCTTCTTTCCTTCTCCAGCCATGG | + |
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Preference number: 6 (lower is better) Translates to: ILPHLTVDLAITHLT*VLTLQQSSFLLQPW Trigger: CCATGGCTGGAGAAGGAAAGAAGACTGTTGCAGTGTCAGGACCAAGGTCAAATGAGTTATAGCCAAGTCTACAGTAAGATGTGGCAGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000624859.3 |
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| CDS GCA 72 bp | TCTTTAGAGGGTAAGCACTTGACCAAGTGGCAAGCTTaGCAATCATGGTCCTCGCTTCAAAACAGAATACTG | + |
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Preference number: 6 (lower is better) Translates to: SLEGKHLTKWQA*QSWSSLQNRIL Trigger: CAGTATTCTGTTTTGAAGCGAGGACCATGATTGGCAAGCTTGCCACTTGGTCAAGTGCTTACCCTCTAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000623227.1 ENST00000624859.3 |
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| CDS CAA 72 bp | CTGCCACATCTTACTGTAGACTTGGCTATAACTCATTaGACCTTGGTCCTGACACTGCAACAGTCTGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: LPHLTVDLAITH*TLVLTLQQSVE Trigger: TTCCACAGACTGTTGCAGTGTCAGGACCAAGGTCAAATGAGTTATAGCCAAGTCTACAGTAAGATGTGGCAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623227.1 |
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| CDS CCA 72 bp | AACATAAAGGAGAGTAACATAAGCAAGACGACAGAATaGGAGGTTCTGCATCCACATCCCCCACGACATAAT | + |
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Preference number: 6 (lower is better) Translates to: NIKESNISKTTE*EVLHPHPPRHN Trigger: ATTATGTCGTGGGGGATGTGGATGCAGAACCTCCCATTCTGTCGTCTTGCTTATGTTACTCTCCTTTATGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000623227.1 ENST00000624261.1 ENST00000624859.3 |
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| CDS CAA 72 bp | CTGCCACATCTTACTGTAGACTTGGCTATAACTCATTaGACCTTGGTCCTGACACTGCAACAGTCTTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LPHLTVDLAITH*TLVLTLQQSSF Trigger: GAAAGAAGACTGTTGCAGTGTCAGGACCAAGGTCAAATGAGTTATAGCCAAGTCTACAGTAAGATGTGGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000624859.3 |
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| CDS CAA 90 bp | AACAGAATACTGCCACATCTTACTGTAGACTTGGCTATAACTCATTaGACCTTGGTCCTGACACTGCAACAGTCTTCTTTCCTTCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: NRILPHLTVDLAITH*TLVLTLQQSSFLLQ Trigger: CTGGAGAAGGAAAGAAGACTGTTGCAGTGTCAGGACCAAGGTCAAATGAGTTATAGCCAAGTCTACAGTAAGATGTGGCAGTATTCTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000624859.3 |
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| CDS CAA 72 bp | CATCTTACTGTAGACTTGGCTATAACTCATTTGACCTaGGTCCTGACACTGCAACAGTCTGTGGAAAACACA | + |
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Preference number: 6 (lower is better) Translates to: HLTVDLAITHLT*VLTLQQSVENT Trigger: TGTGTTTTCCACAGACTGTTGCAGTGTCAGGACCAAGGTCAAATGAGTTATAGCCAAGTCTACAGTAAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623227.1 |
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| CDS CAA 90 bp | ATACTGCCACATCTTACTGTAGACTTGGCTATAACTCATTTGACCTaGGTCCTGACACTGCAACAGTCTGTGGAAAACACAAGAGAATTC | + |
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Preference number: 6 (lower is better) Translates to: ILPHLTVDLAITHLT*VLTLQQSVENTREF Trigger: GAATTCTCTTGTGTTTTCCACAGACTGTTGCAGTGTCAGGACCAAGGTCAAATGAGTTATAGCCAAGTCTACAGTAAGATGTGGCAGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623227.1 |
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| CDS CAA 90 bp | AACAGAATACTGCCACATCTTACTGTAGACTTGGCTATAACTCATTaGACCTTGGTCCTGACACTGCAACAGTCTGTGGAAAACACAAGA | + |
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Preference number: 6 (lower is better) Translates to: NRILPHLTVDLAITH*TLVLTLQQSVENTR Trigger: TCTTGTGTTTTCCACAGACTGTTGCAGTGTCAGGACCAAGGTCAAATGAGTTATAGCCAAGTCTACAGTAAGATGTGGCAGTATTCTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623227.1 |
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