Pregenerated sensors for LINC01668 (Homo sapiens)
Ensembl gene IDs: ENSG00000283051Ensembl transcript IDs: ENST00000635001.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCCCCAGCAGACTCACACATCACACCTCCCTCACCACCGAGTCCCTaGGCAGCAACGTGGGCCCGGCTCACAAGCAGTGCTGGAGACAGC | + |
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Preference number: 5 (lower is better) Translates to: APADSHITPPSPPSP*AATWARLTSSAGDS Trigger: GCTGTCTCCAGCACTGCTTGTGAGCCGGGCCCACGTTGCTGCCCAGGGACTCGGTGGTGAGGGAGGTGTGATGTGTGAGTCTGCTGGGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS CCA 90 bp | TCGCAGTTGGGAGCTGGCATCGTGCAATCTTCGGAATGCAGCCTCTaGCTCTCCCATCAAAAGGCAACGCAGCCCCCTGTGATTTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: SQLGAGIVQSSECSL*LSHQKATQPPVISA Trigger: AGCTGAAATCACAGGGGGCTGCGTTGCCTTTTGATGGGAGAGCCAGAGGCTGCATTCCGAAGATTGCACGATGCCAGCTCCCAACTGCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS GCA 90 bp | GAAATTCCAACAAATCTGCCCCCTCGCAGTTGGGAGCTGGCATCGTaGAATCTTCGGAATGCAGCCTCTGGCTCTCCCATCAAAAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: EIPTNLPPRSWELAS*NLRNAASGSPIKRQ Trigger: TTGCCTTTTGATGGGAGAGCCAGAGGCTGCATTCCGAAGATTGCACGATGCCAGCTCCCAACTGCGAGGGGGCAGATTTGTTGGAATTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS CCA 90 bp | GGATTTGAGAAATTCCAACAAATCTGCCCCCTCGCAGTTGGGAGCTaGCATCGTGCAATCTTCGGAATGCAGCCTCTGGCTCTCCCATCA | + |
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Preference number: 5 (lower is better) Translates to: GFEKFQQICPLAVGS*HRAIFGMQPLALPS Trigger: TGATGGGAGAGCCAGAGGCTGCATTCCGAAGATTGCACGATGCCAGCTCCCAACTGCGAGGGGGCAGATTTGTTGGAATTTCTCAAATCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS TCA 90 bp | CTTTTATTCGTAATGTCTAAAGCCAACCCAAGCGTCTTTGCCGGCTaGCGTCTTAGCCAAATCATGTGGGAAACCCGTGAAGCAGAACTG | + |
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Preference number: 5 (lower is better) Translates to: LLFVMSKANPSVFAG*RLSQIMWETREAEL Trigger: CAGTTCTGCTTCACGGGTTTCCCACATGATTTGGCTAAGACGTCAGCCGGCAAAGACGCTTGGGTTGGCTTTAGACATTACGAATAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS GCA 90 bp | ACAACGCATGTATCAAAGACTGGATTTGAGAAATTCCAACAAATCTaGCCCCTCGCAGTTGGGAGCTGGCATCGTGCAATCTTCGGAATG | + |
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Preference number: 5 (lower is better) Translates to: TTHVSKTGFEKFQQI*PLAVGSWHRAIFGM Trigger: CATTCCGAAGATTGCACGATGCCAGCTCCCAACTGCGAGGGGGCAGATTTGTTGGAATTTCTCAAATCCAGTCTTTGATACATGCGTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS CCA 72 bp | GACTCACACATCACACCTCCCTCACCACCGAGTCCCTaGGCAGCAACGTGGGCCCGGCTCACAAGCAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: DSHITPPSPPSP*AATWARLTSSA Trigger: AGCACTGCTTGTGAGCCGGGCCCACGTTGCTGCCCAGGGACTCGGTGGTGAGGGAGGTGTGATGTGTGAGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS CCA 72 bp | GGAGCTGGCATCGTGCAATCTTCGGAATGCAGCCTCTaGCTCTCCCATCAAAAGGCAACGCAGCCCCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: GAGIVQSSECSL*LSHQKATQPPV Trigger: CACAGGGGGCTGCGTTGCCTTTTGATGGGAGAGCCAGAGGCTGCATTCCGAAGATTGCACGATGCCAGCTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS GCA 72 bp | ACAAATCTGCCCCCTCGCAGTTGGGAGCTGGCATCGTaGAATCTTCGGAATGCAGCCTCTGGCTCTCCCATC | + |
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Preference number: 6 (lower is better) Translates to: TNLPPRSWELAS*NLRNAASGSPI Trigger: GATGGGAGAGCCAGAGGCTGCATTCCGAAGATTGCACGATGCCAGCTCCCAACTGCGAGGGGGCAGATTTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS GCA 72 bp | TCGCAGTTGGGAGCTGGCATCGTGCAATCTTCGGAATaGAGCCTCTGGCTCTCCCATCAAAAGGCAACGCAG | + |
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Preference number: 6 (lower is better) Translates to: SQLGAGIVQSSE*SLWLSHQKATQ Trigger: CTGCGTTGCCTTTTGATGGGAGAGCCAGAGGCTGCATTCCGAAGATTGCACGATGCCAGCTCCCAACTGCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS CCA 72 bp | AAATTCCAACAAATCTGCCCCCTCGCAGTTGGGAGCTaGCATCGTGCAATCTTCGGAATGCAGCCTCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: KFQQICPLAVGS*HRAIFGMQPLA Trigger: AGCCAGAGGCTGCATTCCGAAGATTGCACGATGCCAGCTCCCAACTGCGAGGGGGCAGATTTGTTGGAATTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS CAA 90 bp | CAAAGACTGGATTTGAGAAATTCCAACAAATCTGCCCCCTCGCAGTaGGGAGCTGGCATCGTGCAATCTTCGGAATGCAGCCTCTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: QRLDLRNSNKSAPSQ*GAGIVQSSECSLWL Trigger: GAGCCAGAGGCTGCATTCCGAAGATTGCACGATGCCAGCTCCCAACTGCGAGGGGGCAGATTTGTTGGAATTTCTCAAATCCAGTCTTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS CAA 72 bp | GATTTGAGAAATTCCAACAAATCTGCCCCCTCGCAGTaGGGAGCTGGCATCGTGCAATCTTCGGAATGCAGC | + |
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Preference number: 6 (lower is better) Translates to: DLRNSNKSAPSQ*GAGIVQSSECS Trigger: GCTGCATTCCGAAGATTGCACGATGCCAGCTCCCAACTGCGAGGGGGCAGATTTGTTGGAATTTCTCAAATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS GCA 72 bp | GTATCAAAGACTGGATTTGAGAAATTCCAACAAATCTaGCCCCTCGCAGTTGGGAGCTGGCATCGTGCAATC | + |
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Preference number: 6 (lower is better) Translates to: VSKTGFEKFQQI*PLAVGSWHRAI Trigger: GATTGCACGATGCCAGCTCCCAACTGCGAGGGGGCAGATTTGTTGGAATTTCTCAAATCCAGTCTTTGATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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| CDS CAA 72 bp | CAATTGAAGGAACAACGCATGTATCAAAGACTGGATTaGAGAAATTCCAACAAATCTGCCCCCTCGCAGTTG | + |
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Preference number: 6 (lower is better) Translates to: QLKEQRMYQRLD*RNSNKSAPSQL Trigger: CAACTGCGAGGGGGCAGATTTGTTGGAATTTCTCAAATCCAGTCTTTGATACATGCGTTGTTCCTTCAATTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000635001.1 |
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