Pregenerated sensors for LINC01667 (Homo sapiens)
Ensembl gene IDs: ENSG00000280081Ensembl transcript IDs: ENST00000623554.3, ENST00000623919.1, ENST00000651050.1, ENST00000651542.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTCTTAGCCATGACAGTGACCCAACCAACACCGTCCGTGCAGGCCTaGGGCTGGGATCCCGTGCTGCTTCCCCCGTCTCCGACTGGGGTT | + |
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Preference number: 5 (lower is better) Translates to: FLAMTVTQPTPSVQA*GWDPVLLPPSPTGV Trigger: AACCCCAGTCGGAGACGGGGGAAGCAGCACGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTGGTTGGGTCACTGTCATGGCTAAGAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000623554.3 |
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| CDS CCA 90 bp | GCAGGCCTGAGGCTGGGATCCCGTGCTGCTTCCCCGGTCTCCACCTaGGGTTTCATCTTCATAGTCGGCCCTTTGCGACTGCTGGCATCA | + |
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Preference number: 5 (lower is better) Translates to: AGLRLGSRAASPVST*GFIFIVGPLRLLAS Trigger: TGATGCCAGCAGTCGCAAAGGGCCGACTATGAAGATGAAACCCCAGGTGGAGACCGGGGAAGCAGCACGGGATCCCAGCCTCAGGCCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651542.1 |
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| CDS TCA 90 bp | CTTGATCCTAGAAAAGAGGCCCAACCAACACCGTCCGTGCAGGCCTaGGGCTGGGATCCCGTGCTGCTTTCCCCGTCTCCGTCTGTGGTT | + |
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Preference number: 5 (lower is better) Translates to: LDPRKEAQPTPSVQA*GWDPVLLSPSPSVV Trigger: AACCACAGACGGAGACGGGGAAAGCAGCACGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTGGTTGGGCCTCTTTTCTAGGATCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000651050.1 |
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| CDS CCA 90 bp | AGGCCTGAGGCTGGGATCCCGTGCTGCTTTCCCCGTCTCCGTCTGTaGTTTCATCTTCATAGTCGGCCCTTTGCGACTGCTGGCATCAGG | + |
|
Preference number: 5 (lower is better) Translates to: RPEAGIPCCFPRLRL*FHLHSRPFATAGIR Trigger: CCTGATGCCAGCAGTCGCAAAGGGCCGACTATGAAGATGAAACCACAGACGGAGACGGGGAAAGCAGCACGGGATCCCAGCCTCAGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651050.1 |
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| CDS GCA 72 bp | CACCGTCCGTGCAGGCCTGAGGCTGGGATCCCGTGCTaGTTCCCCGGTCTCCACCTGGGGTTTCATCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: HRPCRPEAGIPC*FPGLHLGFHLH Trigger: ATGAAGATGAAACCCCAGGTGGAGACCGGGGAAGCAGCACGGGATCCCAGCCTCAGGCCTGCACGGACGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000651542.1 |
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| CDS TCA 72 bp | AGAAAAGAGGCCCAACAAACACCGTCCGTGCAGGCCTaGGGCTGGGATCCCGTGCTGCTTCCCCGGTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: RKEAQQTPSVQA*GWDPVLLPRSP Trigger: TGGAGACCGGGGAAGCAGCACGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTTGTTGGGCCTCTTTTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000651542.1 |
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| CDS GCA 72 bp | AAACACCGTCCGTGCAGGCCTGAGGCTGGGATCCCGTaGTGCTTCCCCGGTCTCCACCTGGGGTTTCATCTT | + |
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Preference number: 6 (lower is better) Translates to: KHRPCRPEAGIP*CFPGLHLGFHL Trigger: AAGATGAAACCCCAGGTGGAGACCGGGGAAGCAGCACGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000651542.1 |
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| CDS CCA 72 bp | AGGCTGGGATCCCGTGCTGCTTCCCCCGTCTCCGACTaGGGTTTCATCATCATGGTCGGCCCTTTGCGACTG | + |
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Preference number: 6 (lower is better) Translates to: RLGSRAASPVSD*GFIIMVGPLRL Trigger: CAGTCGCAAAGGGCCGACCATGATGATGAAACCCCAGTCGGAGACGGGGGAAGCAGCACGGGATCCCAGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000623554.3 |
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| CDS TCA 72 bp | GCATCAGGAGAGTTTCCCTTCGAGCCCGTGGAGAGGTaGGACCGGAGCCTCAGAGCCTCGATACCCAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: ASGEFPFEPVER*DRSLRASIPKH Trigger: GTGCTTGGGTATCGAGGCTCTGAGGCTCCGGTCTCACCTCTCCACGGGCTCGAAGGGAAACTCTCCTGATGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000651542.1 |
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| CDS GCA 72 bp | CACCGTCCGTGCAGGCCTGAGGCTGGGATCCCGTGCTaGTTTCCCCGTCTCCGTCTGTGGTTTCATCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: HRPCRPEAGIPC*FPRLRLWFHLH Trigger: ATGAAGATGAAACCACAGACGGAGACGGGGAAAGCAGCACGGGATCCCAGCCTCAGGCCTGCACGGACGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651050.1 |
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| CDS CCA 72 bp | AGGCTGGGATCCCGTGCTGCTTCCCCGGTCTCCACCTaGGGTTTCATCTTCATAGTCGGCCCTTTGCGACTG | + |
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Preference number: 6 (lower is better) Translates to: RLGSRAASPVST*GFIFIVGPLRL Trigger: CAGTCGCAAAGGGCCGACTATGAAGATGAAACCCCAGGTGGAGACCGGGGAAGCAGCACGGGATCCCAGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651542.1 |
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| CDS GCA 72 bp | TTGATCCTAGAAAAGAGGCCCAACAAACACCGTCCGTaGAGGCCTGAGGCTGGGATCCCGTGCTGCTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: LILEKRPNKHRP*RPEAGIPCCFP Trigger: GGGGAAGCAGCACGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTTGTTGGGCCTCTTTTCTAGGATCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651542.1 |
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| CDS GCA 72 bp | TTGATCCTAGAAAAGAGGCCCAACCAACACCGTCCGTaGAGGCCTGAGGCTGGGATCCCGTGCTGCTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: LILEKRPNQHRP*RPEAGIPCCFP Trigger: GGGAAAGCAGCACGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTGGTTGGGCCTCTTTTCTAGGATCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651050.1 |
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| CDS GCA 72 bp | TCTCCGCCTGGGGTATCATCATCATGGTCCGCCCTTTaGGACTGCTGTCATCAGGAGAGGTTCCCTTCGACC | + |
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Preference number: 6 (lower is better) Translates to: SPPGVSSSWSAL*DCCHQERFPST Trigger: GGTCGAAGGGAACCTCTCCTGATGACAGCAGTCGCAAAGGGCGGACCATGATGATGATACCCCAGGCGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623919.1 |
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| CDS CCA 72 bp | GCTGGGATCCCGTGCTGCTTTCCCCGTCTCCGTCTGTaGTTTCATCTTCATAGTCGGCCCTTTGCGACTGCT | + |
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Preference number: 6 (lower is better) Translates to: AGIPCCFPRLRL*FHLHSRPFATA Trigger: AGCAGTCGCAAAGGGCCGACTATGAAGATGAAACCACAGACGGAGACGGGGAAAGCAGCACGGGATCCCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000651050.1 |
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| CDS GCA 72 bp | TCTCCGACTGGGGTTTCATCATCATGGTCGGCCCTTTaGGACTGCTGTCATCAGGAGAGGTTCCCTTCGACC | + |
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Preference number: 6 (lower is better) Translates to: SPTGVSSSWSAL*DCCHQERFPST Trigger: GGTCGAAGGGAACCTCTCCTGATGACAGCAGTCGCAAAGGGCCGACCATGATGATGAAACCCCAGTCGGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000623554.3 |
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