Pregenerated sensors for LINC01665 (Homo sapiens)
Ensembl gene IDs: ENSG00000235343Ensembl transcript IDs: ENST00000422917.1, ENST00000665507.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCGACCCCCTGGATTGGTCAGGCTGGAGCCTCGACCCCGACGCACTaGCACGGAGGGCTCCTGCTTTGTCAAGGCTCAGGGAATCGTCCT | + |
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Preference number: 5 (lower is better) Translates to: STPWIGQAGASTPTH*HGGLLLCQGSGNRP Trigger: AGGACGATTCCCTGAGCCTTGACAAAGCAGGAGCCCTCCGTGGCAGTGCGTCGGGGTCGAGGCTCCAGCCTGACCAATCCAGGGGGTCGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000422917.1 ENST00000665507.1 |
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| CDS TCA 90 bp | TTTCACATTGGTCTCCTCCCCTCCCGAACACCGTACGGGCAGGCCTaGGGCTGGGATGCCGCACTGCTTTCCCCGGACTCCGTCTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: FHIGLLPSRTPYGQA*GWDAALLSPDSVCC Trigger: ACAGCAGACGGAGTCCGGGGAAAGCAGTGCGGCATCCCAGCCTCAGGCCTGCCCGTACGGTGTTCGGGAGGGGAGGAGACCAATGTGAAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000422917.1 ENST00000665507.1 |
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| CDS GCA 90 bp | AGTCACCGTCACGGGAGAATGGGCTCGTGCCTCCCGCATGCGCATTaGCCAGGCCGACTCCTGCTTTGCTCTTCAAACTCCGGCTGTGGC | + |
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Preference number: 5 (lower is better) Translates to: SHRHGRMGSCLPHAH*PGRLLLCSSNSGCG Trigger: GCCACAGCCGGAGTTTGAAGAGCAAAGCAGGAGTCGGCCTGGGCAATGCGCATGCGGGAGGCACGAGCCCATTCTCCCGTGACGGTGACT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422917.1 |
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| CDS GCA 90 bp | CCGTTGGAGTCACCGTCACGGGAGAATGGGCTCGTGCCTCCCGCATaGGCATTGCCCAGGCCGACTCCTGCTTTGCTCTTCAAACTCCGG | + |
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Preference number: 5 (lower is better) Translates to: PLESPSRENGLVPPA*ALPRPTPALLFKLR Trigger: CCGGAGTTTGAAGAGCAAAGCAGGAGTCGGCCTGGGCAATGCGCATGCGGGAGGCACGAGCCCATTCTCCCGTGACGGTGACTCCAACGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422917.1 |
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| CDS TCA 72 bp | GGTCTCCTCCCCTCCCGAACACCGTACGGGCAGGCCTaGGGCTGGGATGCCGCACTGCTTTCCCCGGACTCC | + |
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Preference number: 6 (lower is better) Translates to: GLLPSRTPYGQA*GWDAALLSPDS Trigger: GGAGTCCGGGGAAAGCAGTGCGGCATCCCAGCCTCAGGCCTGCCCGTACGGTGTTCGGGAGGGGAGGAGACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000422917.1 ENST00000665507.1 |
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| CDS GCA 72 bp | TGGATTGGTCAGGCTGGAGCCTCGACCCCGACGCACTaGCACGGAGGGCTCCTGCTTTGTCAAGGCTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: WIGQAGASTPTH*HGGLLLCQGSG Trigger: CCCTGAGCCTTGACAAAGCAGGAGCCCTCCGTGGCAGTGCGTCGGGGTCGAGGCTCCAGCCTGACCAATCCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000422917.1 ENST00000665507.1 |
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| CDS GCA 72 bp | CACCGTACGGGCAGGCCTGAGGCTGGGATGCCGCACTaGTTTCCCCGGACTCCGTCTGCTGTTTCTGCATCC | + |
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Preference number: 6 (lower is better) Translates to: HRTGRPEAGMPH*FPRTPSAVSAS Trigger: GGATGCAGAAACAGCAGACGGAGTCCGGGGAAAGCAGTGCGGCATCCCAGCCTCAGGCCTGCCCGTACGGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000422917.1 ENST00000665507.1 |
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| CDS GCA 72 bp | TCACCGTCACGGGAGAATGGGCTCGTGCCTCCCGCATaGGCATTGCCCAGGCCGACTCCTGCTTTGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: SPSRENGLVPPA*ALPRPTPALLF Trigger: GAAGAGCAAAGCAGGAGTCGGCCTGGGCAATGCGCATGCGGGAGGCACGAGCCCATTCTCCCGTGACGGTGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422917.1 |
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| CDS CAA 90 bp | GAGTCACCGTCACGGGAGAATGGGCTCGTGCCTCCCGCATGCGCATaGCCCAGGCCGACTCCTGCTTTGCTCTTCAAACTCCGGCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: ESPSRENGLVPPACA*PRPTPALLFKLRLW Trigger: CCACAGCCGGAGTTTGAAGAGCAAAGCAGGAGTCGGCCTGGGCAATGCGCATGCGGGAGGCACGAGCCCATTCTCCCGTGACGGTGACTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422917.1 |
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| CDS GCA 72 bp | CACGGGAGAATGGGCTCGTGCCTCCCGCATGCGCATTaGCCAGGCCGACTCCTGCTTTGCTCTTCAAACTCC | + |
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Preference number: 6 (lower is better) Translates to: HGRMGSCLPHAH*PGRLLLCSSNS Trigger: GGAGTTTGAAGAGCAAAGCAGGAGTCGGCCTGGGCAATGCGCATGCGGGAGGCACGAGCCCATTCTCCCGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422917.1 |
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| CDS CAA 72 bp | TCACGGGAGAATGGGCTCGTGCCTCCCGCATGCGCATaGCCCAGGCCGACTCCTGCTTTGCTCTTCAAACTC | + |
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Preference number: 6 (lower is better) Translates to: SRENGLVPPACA*PRPTPALLFKL Trigger: GAGTTTGAAGAGCAAAGCAGGAGTCGGCCTGGGCAATGCGCATGCGGGAGGCACGAGCCCATTCTCCCGTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422917.1 |
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