Pregenerated sensors for LINC01661 (Homo sapiens)
Ensembl gene IDs: ENSG00000237460Ensembl transcript IDs: ENST00000415910.3, ENST00000659929.1, ENST00000662724.1
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CACCCGCCTTCTGCATTGATCTCCTTGGGAGCTGCAGAAAGGAGCTaGTCCTATTTGGCCATCTTGCCCAGGTCTCTTCCTTGCCCATTT | + |
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Preference number: 5 (lower is better) Translates to: HPPSALISLGAAERS*SYLAILPRSLPCPF Trigger: AAATGGGCAAGGAAGAGACCTGGGCAAGATGGCCAAATAGGACCAGCTCCTTTCTGCAGCTCCCAAGGAGATCAATGCAGAAGGCGGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS GCA 90 bp | GAAATGCAGAAATCACCCGCCTTCTGCATTGATCTCCTTGGGAGCTaGAGAAAGGAGCTGGTCCTATTTGGCCATCTTGCCCAGGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: EMQKSPAFCIDLLGS*RKELVLFGHLAQVS Trigger: AGAGACCTGGGCAAGATGGCCAAATAGGACCAGCTCCTTTCTGCAGCTCCCAAGGAGATCAATGCAGAAGGCGGGTGATTTCTGCATTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS TCA 90 bp | TCTTCATCCTCAGTTGGAAATGCAGAAATCACCCGCCTTCTGCATTaGTCTCCTTGGGAGCTGCAGAAAGGAGCTGGTCCTATTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: SSSSVGNAEITRLLH*SPWELQKGAGPIWP Trigger: TGGCCAAATAGGACCAGCTCCTTTCTGCAGCTCCCAAGGAGATCAATGCAGAAGGCGGGTGATTTCTGCATTTCCAACTGAGGATGAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS TCA 90 bp | CTAAATTTGTGGTTCAGATTCTTCTGTTCGAAGTGTGCCTTTGACTaGAGTGCTAAGAGGAACCAGGGTGGGGATGTTGGTTACCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: LNLWFRFFCSKCAFD*SAKRNQGGDVGYQH Trigger: GTGCTGGTAACCAACATCCCCACCCTGGTTCCTCTTAGCACTTCAGTCAAAGGCACACTTCGAACAGAAGAATCTGAACCACAAATTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS CCA 90 bp | TGGTGTGTGGCATGGACACAGATACGAGAACTGGTAAGAATCCTATaGAGCCATAGTGGAAGCCAGGTGTCATTATACAATAGTTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: WCVAWTQIRELVRIL*SHSGSQVSLYNSSW Trigger: CCAAGAACTATTGTATAATGACACCTGGCTTCCACTATGGCTCCATAGGATTCTTACCAGTTCTCGTATCTGTGTCCATGCCACACACCA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659929.1 |
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| CDS TCA 90 bp | TCAGATTTCCACTGTATATTTAGATCAGAGCAAGATCCTCCCTGGTaGACTCCATCGAGCCATTGCTTTGGGTTTAGATGGCTTTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: SDFHCIFRSEQDPPW*TPSSHCFGFRWLCP Trigger: TGGACAAAGCCATCTAAACCCAAAGCAATGGCTCGATGGAGTTCACCAGGGAGGATCTTGCTCTGATCTAAATATACAGTGGAAATCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS CCA 90 bp | CTATGGAGCCATAGTGGAAGCCAGGTGTCATTATACAATAGTTCTTaGTCATGCAGGTATTTTTCAGAGGCAGAGATAAACCAGGTGCCA | + |
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Preference number: 5 (lower is better) Translates to: LWSHSGSQVSLYNSS*SCRYFSEAEINQVP Trigger: TGGCACCTGGTTTATCTCTGCCTCTGAAAAATACCTGCATGACCAAGAACTATTGTATAATGACACCTGGCTTCCACTATGGCTCCATAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659929.1 |
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| CDS CCA 90 bp | GGGAGGAAAATGACTTCTGGAAGCCTTTCTGAAGGTAGTAGAGACTaGCTAAATTTGTGGTTCAGATTCTTCTGTTCGAAGTGTGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: GRKMTSGSLSEGSRD*LNLWFRFFCSKCAF Trigger: AAAGGCACACTTCGAACAGAAGAATCTGAACCACAAATTTAGCCAGTCTCTACTACCTTCAGAAAGGCTTCCAGAAGTCATTTTCCTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS CCA 90 bp | GATCTGAATGGTTTCCCACTTGAATCTTCCAAGATACTCCTAGATTaGGTAGTAGTGTCCCTCCTAGCAGGAATAGAGAAATTAGAAATC | + |
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Preference number: 5 (lower is better) Translates to: DLNGFPLESSKILLD*VVVSLLAGIEKLEI Trigger: GATTTCTAATTTCTCTATTCCTGCTAGGAGGGACACTACTACCCAATCTAGGAGTATCTTGGAAGATTCAAGTGGGAAACCATTCAGATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS CCA 72 bp | TCTCCTTGGGAGCTGCAGAAAGGAGCTGGTCCTATTTaGCCATCTTGCCCAGGTCTCTTCCTTGCCCATTTT | + |
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Preference number: 6 (lower is better) Translates to: SPWELQKGAGPI*PSCPGLFLAHF Trigger: AAAATGGGCAAGGAAGAGACCTGGGCAAGATGGCCAAATAGGACCAGCTCCTTTCTGCAGCTCCCAAGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS CAA 72 bp | ATCTCCTTGGGAGCTGCAGAAAGGAGCTGGTCCTATTaGGCCATCTTGCCCAGGTCTCTTCCTTGCCCATTT | + |
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Preference number: 6 (lower is better) Translates to: ISLGAAERSWSY*AILPRSLPCPF Trigger: AAATGGGCAAGGAAGAGACCTGGGCAAGATGGCCAAATAGGACCAGCTCCTTTCTGCAGCTCCCAAGGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS CAA 72 bp | CTCAGTTGGAAATGCAGAAATCACCCGCCTTCTGCATaGATCTCCTTGGGAGCTGCAGAAAGGAGCTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: LSWKCRNHPPSA*ISLGAAERSWS Trigger: GGACCAGCTCCTTTCTGCAGCTCCCAAGGAGATCAATGCAGAAGGCGGGTGATTTCTGCATTTCCAACTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS CAA 90 bp | CTCAGTTGGAAATGCAGAAATCACCCGCCTTCTGCATTGATCTCCTaGGGAGCTGCAGAAAGGAGCTGGTCCTATTTGGCCATCTTGCCC | + |
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Preference number: 6 (lower is better) Translates to: LSWKCRNHPPSALIS*GAAERSWSYLAILP Trigger: GGGCAAGATGGCCAAATAGGACCAGCTCCTTTCTGCAGCTCCCAAGGAGATCAATGCAGAAGGCGGGTGATTTCTGCATTTCCAACTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS TCA 72 bp | TCAGTTGGAAATGCAGAAATCACCCGCCTTCTGCATTaGTCTCCTTGGGAGCTGCAGAAAGGAGCTGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: SVGNAEITRLLH*SPWELQKGAGP Trigger: AGGACCAGCTCCTTTCTGCAGCTCCCAAGGAGATCAATGCAGAAGGCGGGTGATTTCTGCATTTCCAACTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS GCA 72 bp | CATCCTCAGTTGGAAATGCAGAAATCACCCGCCTTCTaGATTGATCTCCTTGGGAGCTGCAGAAAGGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: HPQLEMQKSPAF*IDLLGSCRKEL Trigger: CAGCTCCTTTCTGCAGCTCCCAAGGAGATCAATGCAGAAGGCGGGTGATTTCTGCATTTCCAACTGAGGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS CAA 72 bp | AAATGCAGAAATCACCCGCCTTCTGCATTGATCTCCTaGGGAGCTGCAGAAAGGAGCTGGTCCTATTTGGCC | + |
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Preference number: 6 (lower is better) Translates to: KCRNHPPSALIS*GAAERSWSYLA Trigger: GGCCAAATAGGACCAGCTCCTTTCTGCAGCTCCCAAGGAGATCAATGCAGAAGGCGGGTGATTTCTGCATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS GCA 72 bp | GAGCTGCAGAAAGGAGCTGGTCCTATTTGGCCATCTTaGCCAGGTCTCTTCCTTGCCCATTTTCATTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: ELQKGAGPIWPS*PGLFLAHFHCF Trigger: GAAACAATGAAAATGGGCAAGGAAGAGACCTGGGCAAGATGGCCAAATAGGACCAGCTCCTTTCTGCAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS CAA 72 bp | GGAGCTGCAGAAAGGAGCTGGTCCTATTTGGCCATCTaGCCCAGGTCTCTTCCTTGCCCATTTTCATTGTTT | + |
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Preference number: 6 (lower is better) Translates to: GAAERSWSYLAI*PRSLPCPFSLF Trigger: AAACAATGAAAATGGGCAAGGAAGAGACCTGGGCAAGATGGCCAAATAGGACCAGCTCCTTTCTGCAGCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS CAA 90 bp | TCTGCATTGATCTCCTTGGGAGCTGCAGAAAGGAGCTGGTCCTATTaGGCCATCTTGCCCAGGTCTCTTCCTTGCCCATTTTCATTGTTT | + |
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Preference number: 6 (lower is better) Translates to: SALISLGAAERSWSY*AILPRSLPCPFSLF Trigger: AAACAATGAAAATGGGCAAGGAAGAGACCTGGGCAAGATGGCCAAATAGGACCAGCTCCTTTCTGCAGCTCCCAAGGAGATCAATGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS TCA 72 bp | TGGTTCAGATTCTTCTGTTCGAAGTGTGCCTTTGACTaGAGTGCTAAGAGGAACCAGGGTGGGGATGTTGGT | + |
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Preference number: 6 (lower is better) Translates to: WFRFFCSKCAFD*SAKRNQGGDVG Trigger: ACCAACATCCCCACCCTGGTTCCTCTTAGCACTTCAGTCAAAGGCACACTTCGAACAGAAGAATCTGAACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS CAA 90 bp | ATCTCCTTGGGAGCTGCAGAAAGGAGCTGGTCCTATTTGGCCATCTaGCCCAGGTCTCTTCCTTGCCCATTTTCATTGTTTCATTCTTTA | + |
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Preference number: 6 (lower is better) Translates to: ISLGAAERSWSYLAI*PRSLPCPFSLFHSL Trigger: TAAAGAATGAAACAATGAAAATGGGCAAGGAAGAGACCTGGGCAAGATGGCCAAATAGGACCAGCTCCTTTCTGCAGCTCCCAAGGAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS CAA 72 bp | ATTTGTGGTTCAGATTCTTCTGTTCGAAGTGTGCCTTaGACTGAAGTGCTAAGAGGAACCAGGGTGGGGATG | + |
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Preference number: 6 (lower is better) Translates to: ICGSDSSVRSVP*TEVLRGTRVGM Trigger: CATCCCCACCCTGGTTCCTCTTAGCACTTCAGTCAAAGGCACACTTCGAACAGAAGAATCTGAACCACAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS CAA 72 bp | TCAAAGGTAAGGCCAGTCTGCTCTCTTCATCCTCAGTaGGAAATGCAGAAATCACCCGCCTTCTGCATTGAT | + |
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Preference number: 6 (lower is better) Translates to: SKVRPVCSLHPQ*EMQKSPAFCID Trigger: ATCAATGCAGAAGGCGGGTGATTTCTGCATTTCCAACTGAGGATGAAGAGAGCAGACTGGCCTTACCTTTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415910.3 |
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| CDS TCA 72 bp | CACTGTATATTTAGATCAGAGCAAGATCCTCCCTGGTaGACTCCATCGAGCCATTGCTTTGGGTTTAGATGG | + |
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Preference number: 6 (lower is better) Translates to: HCIFRSEQDPPW*TPSSHCFGFRW Trigger: CCATCTAAACCCAAAGCAATGGCTCGATGGAGTTCACCAGGGAGGATCTTGCTCTGATCTAAATATACAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS TCA 72 bp | GTGTTTCATAGAAACTCAAAATGTCTTCAGAACTACTaGGAGCCTAGCAAAGGCTTACCCAGCAGAGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: VFHRNSKCLQNY*EPSKGLPSREG Trigger: CCCCTCTCTGCTGGGTAAGCCTTTGCTAGGCTCTCAGTAGTTCTGAAGACATTTTGAGTTTCTATGAAACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659929.1 |
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| CDS CAA 90 bp | AGTGTGCCTTTGACTGAAGTGCTAAGAGGAACCAGGGTGGGGATGTaGGTTACCAGCACTTTAGTACTTATTTGCATTTGCAGAGATATG | + |
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Preference number: 6 (lower is better) Translates to: SVPLTEVLRGTRVGM*VTSTLVLICICRDM Trigger: CATATCTCTGCAAATGCAAATAAGTACTAAAGTGCTGGTAACCAACATCCCCACCCTGGTTCCTCTTAGCACTTCAGTCAAAGGCACACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS CCA 72 bp | GCATGGACACAGATACGAGAACTGGTAAGAATCCTATaGAGCCATAGTGGAAGCCAGGTGTCATTATACAAT | + |
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Preference number: 6 (lower is better) Translates to: AWTQIRELVRIL*SHSGSQVSLYN Trigger: ATTGTATAATGACACCTGGCTTCCACTATGGCTCCATAGGATTCTTACCAGTTCTCGTATCTGTGTCCATGC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659929.1 |
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| CDS CAA 90 bp | TCCTTCTTTCATGCCACAGTATTTCCTGGGCACCTCCTTCGTGCATaGTCATATTATATTCTGGTTACTTTTCCTAGGCAAATCACTGGC | + |
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Preference number: 6 (lower is better) Translates to: SFFHATVFPGHLLRA*SYYILVTFPRQITG Trigger: GCCAGTGATTTGCCTAGGAAAAGTAACCAGAATATAATATGACAATGCACGAAGGAGGTGCCCAGGAAATACTGTGGCATGAAAGAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662724.1 |
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| CDS CCA 72 bp | AGCCTTTCTGAAGGTAGTAGAGACTGGCTAAATTTGTaGTTCAGATTCTTCTGTTCGAAGTGTGCCTTTGAC | + |
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Preference number: 6 (lower is better) Translates to: SLSEGSRDWLNL*FRFFCSKCAFD Trigger: GTCAAAGGCACACTTCGAACAGAAGAATCTGAACCACAAATTTAGCCAGTCTCTACTACCTTCAGAAAGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS CCA 72 bp | CTGGGCACCTCCTTCGTGCATTGTCATATTATATTCTaGTTACTTTTCCTAGGCAAATCACTGGCCTTCATT | + |
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Preference number: 6 (lower is better) Translates to: LGTSFVHCHIIF*LLFLGKSLAFI Trigger: AATGAAGGCCAGTGATTTGCCTAGGAAAAGTAACCAGAATATAATATGACAATGCACGAAGGAGGTGCCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662724.1 |
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| CDS CCA 72 bp | ATGACTTCTGGAAGCCTTTCTGAAGGTAGTAGAGACTaGCTAAATTTGTGGTTCAGATTCTTCTGTTCGAAG | + |
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Preference number: 6 (lower is better) Translates to: MTSGSLSEGSRD*LNLWFRFFCSK Trigger: CTTCGAACAGAAGAATCTGAACCACAAATTTAGCCAGTCTCTACTACCTTCAGAAAGGCTTCCAGAAGTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS CCA 72 bp | GAAGAGGTCACCATACAGAACAAATCCATGCTAACATaGGAATCATGGTCAACCACAAAGAGGGTCTATTTT | + |
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Preference number: 6 (lower is better) Translates to: EEVTIQNKSMLT*ESWSTTKRVYF Trigger: AAAATAGACCCTCTTTGTGGTTGACCATGATTCCCATGTTAGCATGGATTTGTTCTGTATGGTGACCTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659929.1 |
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| CDS GCA 72 bp | GTGGGGATGTTGGTTACCAGCACTTTAGTACTTATTTaGATTTGCAGAGATATGTTTATCTGTGAGTTTTCC | + |
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Preference number: 6 (lower is better) Translates to: VGMLVTSTLVLI*ICRDMFICEFS Trigger: GGAAAACTCACAGATAAACATATCTCTGCAAATGCAAATAAGTACTAAAGTGCTGGTAACCAACATCCCCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000415910.3 ENST00000659929.1 ENST00000662724.1 |
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| CDS TCA 72 bp | TTGAGGATGGAATTGATGCATTGCATTATCTTCTATTaGGAGGAACTGTGTCTAATCAAGACAAATTTGAGA | + |
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Preference number: 6 (lower is better) Translates to: LRMELMHCIIFY*EELCLIKTNLR Trigger: TCTCAAATTTGTCTTGATTAGACACAGTTCCTCTCAATAGAAGATAATGCAATGCATCAATTCCATCCTCAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662724.1 |
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