Pregenerated sensors for LINC01657 (Homo sapiens)
Ensembl gene IDs: ENSG00000224718Ensembl transcript IDs: ENST00000457217.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGTGCTTGTCAGCACAGCTGTGAGAAGAGGTCCCTGCATCTCACTTaGCCTCACCTTCTTTCGGCCTCCAGTGCCAGTGAGCAGCCCCAT | + |
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Preference number: 5 (lower is better) Translates to: CACQHSCEKRSLHLT*PHLLSASSASEQPH Trigger: ATGGGGCTGCTCACTGGCACTGGAGGCCGAAAGAAGGTGAGGGCAAGTGAGATGCAGGGACCTCTTCTCACAGCTGTGCTGACAAGCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS CCA 90 bp | GCTCTGCCATTGGTTCTTCCTCCATCAGGTGAGACTTCTCAGTTCTaGGATGAAGAGGATGTGGAACAGGCCTTGCCAACCTGCCATGCA | + |
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Preference number: 5 (lower is better) Translates to: ALPLVLPPSGETSQF*DEEDVEQALPTCHA Trigger: TGCATGGCAGGTTGGCAAGGCCTGTTCCACATCCTCTTCATCCCAGAACTGAGAAGTCTCACCTGATGGAGGAAGAACCAATGGCAGAGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS GCA 90 bp | GGGATTGAATCCAGACCTATCTCCTCTTGGCCCTTCTGTTGTATCTaGACTGGAAGGTCAACACATTTGGGCTCTAGTCCCTCCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: GIESRPISSWPFCCI*TGRSTHLGSSPSSS Trigger: GGAAGAGGAGGGACTAGAGCCCAAATGTGTTGACCTTCCAGTGCAGATACAACAGAAGGGCCAAGAGGAGATAGGTCTGGATTCAATCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS CCA 90 bp | CCTCTTGGCCCTTCTGTTGTATCTGCACTGGAAGGTCAACACATTTaGGCTCTAGTCCCTCCTCTTCCACTGATTTGCTGCGTTAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: PLGPSVVSALEGQHI*ALVPPLPLICCVSS Trigger: TGAGCTAACGCAGCAAATCAGTGGAAGAGGAGGGACTAGAGCCCAAATGTGTTGACCTTCCAGTGCAGATACAACAGAAGGGCCAAGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS TCA 90 bp | AAGAGAAAGGAGGCTACCAGTACACAGCAATTCAGCTTTTTCTGTTaGGGGCCTCACGTGCACAGGCTTTGTGTTTCCCACTTGCCGTAC | + |
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Preference number: 5 (lower is better) Translates to: KRKEATSTQQFSFFC*GPHVHRLCVSHLPY Trigger: GTACGGCAAGTGGGAAACACAAAGCCTGTGCACGTGAGGCCCTCAACAGAAAAAGCTGAATTGCTGTGTACTGGTAGCCTCCTTTCTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS GCA 90 bp | CTACCAGTACACAGCAATTCAGCTTTTTCTGTTGAGGGCCTCACGTaGACAGGCTTTGTGTTTCCCACTTGCCGTACTTTATCTCACGCC | + |
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Preference number: 5 (lower is better) Translates to: LPVHSNSAFSVEGLT*TGFVFPTCRTLSHA Trigger: GGCGTGAGATAAAGTACGGCAAGTGGGAAACACAAAGCCTGTGCACGTGAGGCCCTCAACAGAAAAAGCTGAATTGCTGTGTACTGGTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS CCA 90 bp | TTGGCAAGAAGTTTGGGAGTCAGCCGATCACGCATGAGAAGAGTATaGAGAGAAATACGGGATATAAGTACTTATGAAGATTTTGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: LARSLGVSRSRMRRV*REIRDISTYEDFAR Trigger: TCTTGCAAAATCTTCATAAGTACTTATATCCCGTATTTCTCTCCATACTCTTCTCATGCGTGATCGGCTGACTCCCAAACTTCTTGCCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS GCA 72 bp | CAGCACAGCTGTGAGAAGAGGTCCCTGCATCTCACTTaGCCTCACCTTCTTTCGGCCTCCAGTGCCAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: QHSCEKRSLHLT*PHLLSASSASE Trigger: CTCACTGGCACTGGAGGCCGAAAGAAGGTGAGGGCAAGTGAGATGCAGGGACCTCTTCTCACAGCTGTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS CAA 90 bp | TTCTTTCGGCCTCCAGTGCCAGTGAGCAGCCCCATGCCCTGTTTCTaGAATGCAGGAGCACGTTGTGCTGAACTGATAAGCCTGCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: FFRPPVPVSSPMPCF*NAGARCAELISLQS Trigger: GCTCTGCAGGCTTATCAGTTCAGCACAACGTGCTCCTGCATTCAAGAAACAGGGCATGGGGCTGCTCACTGGCACTGGAGGCCGAAAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS GCA 72 bp | GAGGGCCTCACGTGCACAGGCTTTGTGTTTCCCACTTaGCGTACTTTATCTCACGCCAGTCTTACGACACAA | + |
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Preference number: 6 (lower is better) Translates to: EGLTCTGFVFPT*RTLSHASLTTQ Trigger: TTGTGTCGTAAGACTGGCGTGAGATAAAGTACGGCAAGTGGGAAACACAAAGCCTGTGCACGTGAGGCCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS GCA 72 bp | TCCAGACCTATCTCCTCTTGGCCCTTCTGTTGTATCTaGACTGGAAGGTCAACACATTTGGGCTCTAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: SRPISSWPFCCI*TGRSTHLGSSP Trigger: GGGACTAGAGCCCAAATGTGTTGACCTTCCAGTGCAGATACAACAGAAGGGCCAAGAGGAGATAGGTCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS CCA 72 bp | CAGGTGAGACTTCTCAGTTCTGGGATGAAGAGGATGTaGAACAGGCCTTGCCAACCTGCCATGCACATGAAT | + |
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Preference number: 6 (lower is better) Translates to: QVRLLSSGMKRM*NRPCQPAMHMN Trigger: ATTCATGTGCATGGCAGGTTGGCAAGGCCTGTTCCACATCCTCTTCATCCCAGAACTGAGAAGTCTCACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS CCA 72 bp | TTGGTTCTTCCTCCATCAGGTGAGACTTCTCAGTTCTaGGATGAAGAGGATGTGGAACAGGCCTTGCCAACC | + |
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Preference number: 6 (lower is better) Translates to: LVLPPSGETSQF*DEEDVEQALPT Trigger: GGTTGGCAAGGCCTGTTCCACATCCTCTTCATCCCAGAACTGAGAAGTCTCACCTGATGGAGGAAGAACCAA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS GCA 72 bp | CACAGCAATTCAGCTTTTTCTGTTGAGGGCCTCACGTaGACAGGCTTTGTGTTTCCCACTTGCCGTACTTTA | + |
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Preference number: 6 (lower is better) Translates to: HSNSAFSVEGLT*TGFVFPTCRTL Trigger: TAAAGTACGGCAAGTGGGAAACACAAAGCCTGTGCACGTGAGGCCCTCAACAGAAAAAGCTGAATTGCTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS CAA 90 bp | GGTGAGACTTCTCAGTTCTGGGATGAAGAGGATGTGGAACAGGCCTaGCCAACCTGCCATGCACATGAATATGAGCAAGAAATAGCTCTT | + |
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Preference number: 6 (lower is better) Translates to: GETSQFWDEEDVEQA*PTCHAHEYEQEIAL Trigger: AAGAGCTATTTCTTGCTCATATTCATGTGCATGGCAGGTTGGCAAGGCCTGTTCCACATCCTCTTCATCCCAGAACTGAGAAGTCTCACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS TCA 72 bp | AATGGAAGTGACATGGACTTGGTTCAAGCAGAAGCTTaGGGATCCATCACATGGCTCTGCCATTGGTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: NGSDMDLVQAEA*GSITWLCHWFF Trigger: GAAGAACCAATGGCAGAGCCATGTGATGGATCCTCAAGCTTCTGCTTGAACCAAGTCCATGTCACTTCCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS TCA 72 bp | ACCGACAGCAGGCTGGCCTGTGTGACTTGCTTTAGCTaGTACAATGTAAATGGAAGTGACATGGACTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: TDSRLACVTCFS*YNVNGSDMDLV Trigger: AACCAAGTCCATGTCACTTCCATTTACATTGTATCAGCTAAAGCAAGTCACACAGGCCAGCCTGCTGTCGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS CAA 90 bp | AGGGTAGGAGAGACTCTTAAAGCTCTTTTAGGACAGCCCTCTTCATaGACAGGTAAGAGAATTGAGGCTTTGAGAAGCTGGACACCTTAT | + |
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Preference number: 6 (lower is better) Translates to: RVGETLKALLGQPSS*TGKRIEALRSWTPY Trigger: ATAAGGTGTCCAGCTTCTCAAAGCCTCAATTCTCTTACCTGTCAATGAAGAGGGCTGTCCTAAAAGAGCTTTAAGAGTCTCTCCTACCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS CAA 72 bp | GAGACTCTTAAAGCTCTTTTAGGACAGCCCTCTTCATaGACAGGTAAGAGAATTGAGGCTTTGAGAAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: ETLKALLGQPSS*TGKRIEALRSW Trigger: CCAGCTTCTCAAAGCCTCAATTCTCTTACCTGTCAATGAAGAGGGCTGTCCTAAAAGAGCTTTAAGAGTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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| CDS CCA 72 bp | AGTTTGGGAGTCAGCCGATCACGCATGAGAAGAGTATaGAGAGAAATACGGGATATAAGTACTTATGAAGAT | + |
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Preference number: 6 (lower is better) Translates to: SLGVSRSRMRRV*REIRDISTYED Trigger: ATCTTCATAAGTACTTATATCCCGTATTTCTCTCCATACTCTTCTCATGCGTGATCGGCTGACTCCCAAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457217.1 |
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