Pregenerated sensors for LINC01656 (Homo sapiens)
Ensembl gene IDs: ENSG00000232655Ensembl transcript IDs: ENST00000415702.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCGGTGCATTCTCGGTGCCCAGCACAGCCGGCCTGTCATCAGTGCTaGGGGAGGGACAGGAGGGGTACCTGCAGTGAGGCACAGGCCACG | + |
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Preference number: 5 (lower is better) Translates to: PVHSRCPAQPACHQC*GRDRRGTCSEAQAT Trigger: CGTGGCCTGTGCCTCACTGCAGGTACCCCTCCTGTCCCTCCCGCAGCACTGATGACAGGCCGGCTGTGCTGGGCACCGAGAATGCACCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS TCA 90 bp | GGCCTGTCATCAGTGCTGCGGGAGGGACAGGAGGGGTACCTGCAGTaGGGCACAGGCCACGCCCCCTGCACGCCGACTGGGTTAATCCTC | + |
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Preference number: 5 (lower is better) Translates to: GLSSVLREGQEGYLQ*GTGHAPCTPTGLIL Trigger: GAGGATTAACCCAGTCGGCGTGCAGGGGGCGTGGCCTGTGCCTCACTGCAGGTACCCCTCCTGTCCCTCCCGCAGCACTGATGACAGGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS CCA 90 bp | GGGGTACCTGCAGTGAGGCACAGGCCACGCCCCCTGCACGCCGACTaGGTTAATCCTCTACGGCTCAGGGTCCTGCAGGTGACCAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: GVPAVRHRPRPLHAD*VNPLRLRVLQVTKV Trigger: CACCTTGGTCACCTGCAGGACCCTGAGCCGTAGAGGATTAACCCAGTCGGCGTGCAGGGGGCGTGGCCTGTGCCTCACTGCAGGTACCCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS TCA 90 bp | CTTGCTTCTCACTGGGGACTGGGACTAGTCAGCCTTGGAGTAACATaGCAGGCTCCAGGGTTCCAGTTCCTCGCCATCCTGGCCCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: LASHWGLGLVSLGVT*QAPGFQFLAILAPQ Trigger: CTGCGGGGCCAGGATGGCGAGGAACTGGAACCCTGGAGCCTGTCATGTTACTCCAAGGCTGACTAGTCCCAGTCCCCAGTGAGAAGCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS GCA 90 bp | ACTTCATTTATTTATGATCTTCCTCCCTCCCTGGTCTGTGGGCCCTaGGAGAGCAGGGCCGGTGCATTCTCGGTGCCCAGCACAGCCGGC | + |
|
Preference number: 5 (lower is better) Translates to: TSFIYDLPPSLVCGP*ESRAGAFSVPSTAG Trigger: GCCGGCTGTGCTGGGCACCGAGAATGCACCGGCCCTGCTCTCGCAGGGCCCACAGACCAGGGAGGGAGGAAGATCATAAATAAATGAAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS TCA 90 bp | TCTACGGCTCAGGGTCCTGCAGGTGACCAAGGTGGAGCTGGGATTTaGAGCCGAGCCTCTGACTCCCAAAGCCAGACGGGTCTAGGTTGT | + |
|
Preference number: 5 (lower is better) Translates to: STAQGPAGDQGGAGI*SRASDSQSQTGLGC Trigger: ACAACCTAGACCCGTCTGGCTTTGGGAGTCAGAGGCTCGGCTTCAAATCCCAGCTCCACCTTGGTCACCTGCAGGACCCTGAGCCGTAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS CCA 90 bp | ACGGTGCCTTGCTCACTTCATTTATTTATGATCTTCCTCCCTCCCTaGTCTGTGGGCCCTGCGAGAGCAGGGCCGGTGCATTCTCGGTGC | + |
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Preference number: 5 (lower is better) Translates to: TVPCSLHLFMIFLPP*SVGPARAGPVHSRC Trigger: GCACCGAGAATGCACCGGCCCTGCTCTCGCAGGGCCCACAGACCAGGGAGGGAGGAAGATCATAAATAAATGAAGTGAGCAAGGCACCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS CCA 90 bp | TCAGGTTCTCCTTGCTTCTCACTGGGGACTGGGACTAGTCAGCCTTaGAGTAACATGACAGGCTCCAGGGTTCCAGTTCCTCGCCATCCT | + |
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Preference number: 5 (lower is better) Translates to: SGSPCFSLGTGTSQP*SNMTGSRVPVPRHP Trigger: AGGATGGCGAGGAACTGGAACCCTGGAGCCTGTCATGTTACTCCAAGGCTGACTAGTCCCAGTCCCCAGTGAGAAGCAAGGAGAACCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS CCA 72 bp | GCAGTGAGGCACAGGCCACGCCCCCTGCACGCCGACTaGGTTAATCCTCTACGGCTCAGGGTCCTGCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: AVRHRPRPLHAD*VNPLRLRVLQV Trigger: CACCTGCAGGACCCTGAGCCGTAGAGGATTAACCCAGTCGGCGTGCAGGGGGCGTGGCCTGTGCCTCACTGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS GCA 72 bp | ATTTATGATCTTCCTCCCTCCCTGGTCTGTGGGCCCTaGGAGAGCAGGGCCGGTGCATTCTCGGTGCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: IYDLPPSLVCGP*ESRAGAFSVPS Trigger: GCTGGGCACCGAGAATGCACCGGCCCTGCTCTCGCAGGGCCCACAGACCAGGGAGGGAGGAAGATCATAAAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS TCA 72 bp | CAGGGTCCTGCAGGTGACCAAGGTGGAGCTGGGATTTaGAGCCGAGCCTCTGACTCCCAAAGCCAGACGGGT | + |
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Preference number: 6 (lower is better) Translates to: QGPAGDQGGAGI*SRASDSQSQTG Trigger: ACCCGTCTGGCTTTGGGAGTCAGAGGCTCGGCTTCAAATCCCAGCTCCACCTTGGTCACCTGCAGGACCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS CCA 72 bp | CATGACAGGCTCCAGGGTTCCAGTTCCTCGCCATCCTaGCCCCGCAGAGAGACTTCAACTCCAGGAGGATTC | + |
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Preference number: 6 (lower is better) Translates to: HDRLQGSSSSPS*PRRETSTPGGF Trigger: GAATCCTCCTGGAGTTGAAGTCTCTCTGCGGGGCCAGGATGGCGAGGAACTGGAACCCTGGAGCCTGTCATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS TCA 72 bp | ACTGGGTTAATCCTCTACGGCTCAGGGTCCTGCAGGTaGCCAAGGTGGAGCTGGGATTTGAAGCCGAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: TGLILYGSGSCR*PRWSWDLKPSL Trigger: GAGGCTCGGCTTCAAATCCCAGCTCCACCTTGGTCACCTGCAGGACCCTGAGCCGTAGAGGATTAACCCAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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| CDS TCA 72 bp | GAGAGACTTCAACTCCAGGAGGATTCTGGACTTTTCTaGCAACCCCGGAGACAGCACCTTCCCGCCCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: ERLQLQEDSGLF*QPRRQHLPALP Trigger: GGGAAGGGCGGGAAGGTGCTGTCTCCGGGGTTGTCAGAAAAGTCCAGAATCCTCCTGGAGTTGAAGTCTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000415702.1 |
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