Pregenerated sensors for LINC01645 (Homo sapiens)
Ensembl gene IDs: ENSG00000224968Ensembl transcript IDs: ENST00000451341.2, ENST00000659805.1, ENST00000666721.1
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAATGCCTGCAATTGTCATTAGCCCGTGAAGAGGTTCGCTTAGGCTaGCACAGCACAGAGTCCCAGCTGCGCCGTTTCTCCCCACAGGCA | + |
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Preference number: 5 (lower is better) Translates to: QCLQLSLAREEVRLG*HSTESQLRRFSPQA Trigger: TGCCTGTGGGGAGAAACGGCGCAGCTGGGACTCTGTGCTGTGGCAGCCTAAGCGAACCTCTTCACGGGCTAATGACAATTGCAGGCATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451341.2 ENST00000659805.1 |
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| CDS TCA 90 bp | ACTGTAGTCTGTGGAAGGGAGATGTGTGGTACAGTGGAAGAAGTATaGGCTTGGAATTGGATGGACTGGAGCTCCTTCCTCTGGGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: TVVCGREMCGTVEEV*AWNWMDWSSFLWGR Trigger: CCTTCCCCAGAGGAAGGAGCTCCAGTCCATCCAATTCCAAGCTCATACTTCTTCCACTGTACCACACATCTCCCTTCCACAGACTACAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS TCA 90 bp | GTCCTTGATCCTCAACTCACAGGGGTGTTTGGAAGCCTAGGCAGGTaGTGTCTGTGCTGTGAGTGCAGGTTTCTGGACAAAAGGCATTGT | + |
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Preference number: 5 (lower is better) Translates to: VLDPQLTGVFGSLGR*CLCCECRFLDKRHC Trigger: ACAATGCCTTTTGTCCAGAAACCTGCACTCACAGCACAGACATCACCTGCCTAGGCTTCCAAACACCCCTGTGAGTTGAGGATCAAGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS TCA 90 bp | TTGGGATGGCAGCTCCTTGATTCCTTTATCAGGTCAGCTTTTTCCTaGAGGGTCTCCTTGCCCCTCAAGGCATCTCCTCATCTGAAACTC | + |
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Preference number: 5 (lower is better) Translates to: LGWQLLDSFIRSAFS*RVSLPLKASPHLKL Trigger: GAGTTTCAGATGAGGAGATGCCTTGAGGGGCAAGGAGACCCTTCAGGAAAAAGCTGACCTGATAAAGGAATCAAGGAGCTGCCATCCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000451341.2 ENST00000666721.1 |
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| CDS GCA 90 bp | CCCTGTCCCCTTTCCTTGTATCTGTTCACCCCAAAGTCTCACCTCTaGCTATACCCAGAAGTAGAACCGTTCTGGTCTATCTGTAGTCAG | + |
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Preference number: 5 (lower is better) Translates to: PCPLSLYLFTPKSHL*LYPEVEPFWSICSQ Trigger: CTGACTACAGATAGACCAGAACGGTTCTACTTCTGGGTATAGGCAGAGGTGAGACTTTGGGGTGAACAGATACAAGGAAAGGGGACAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS TCA 90 bp | CCTAGAGTGTTTCAATTTGATAAGTGTAATCCACAAGCCCACCCTTaGTCCCCCTCCATCCATAGTGTCAGGGGCTGCAACAAGCACATT | + |
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Preference number: 5 (lower is better) Translates to: PRVFQFDKCNPQAHP*SPSIHSVRGCNKHI Trigger: AATGTGCTTGTTGCAGCCCCTGACACTATGGATGGAGGGGGATCAAGGGTGGGCTTGTGGATTACACTTATCAAATTGAAACACTCTAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS CCA 90 bp | TGCATGTCACTGGTTAGGTTAATTTCACTGTCCCATCTGTCTTCATaGCTCAAGATCTTCACATGCAGTTCCATAGTCCTTTGGAACTCG | + |
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Preference number: 5 (lower is better) Translates to: CMSLVRLISLSHLSS*LKIFTCSSIVLWNS Trigger: CGAGTTCCAAAGGACTATGGAACTGCATGTGAAGATCTTGAGCCATGAAGACAGATGGGACAGTGAAATTAACCTAACCAGTGACATGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS CCA 90 bp | AGACTTTACAAGAAGAAAAACTGTAGTCTGTGGAAGGGAGATGTGTaGTACAGTGGAAGAAGTATGAGCTTGGAATTGGATGGACTGGAG | + |
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Preference number: 5 (lower is better) Translates to: RLYKKKNCSLWKGDV*YSGRSMSLELDGLE Trigger: CTCCAGTCCATCCAATTCCAAGCTCATACTTCTTCCACTGTACCACACATCTCCCTTCCACAGACTACAGTTTTTCTTCTTGTAAAGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS TCA 90 bp | TACCCAGAAGTAGAACCGTTCTGGTCTATCTGTAGTCAGATTAATTaGACAGGACTCTTTGAAATCCCAAGTAGTTTACGCAGCCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: YPEVEPFWSICSQIN*TGLFEIPSSLRSLS Trigger: AGACAGGCTGCGTAAACTACTTGGGATTTCAAAGAGTCCTGTTCAATTAATCTGACTACAGATAGACCAGAACGGTTCTACTTCTGGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS GCA 90 bp | TTAATTTCACTGTCCCATCTGTCTTCATGGCTCAAGATCTTCACATaGAGTTCCATAGTCCTTTGGAACTCGAGACCATATAAGCCACTA | + |
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Preference number: 5 (lower is better) Translates to: LISLSHLSSWLKIFT*SSIVLWNSRPYKPL Trigger: TAGTGGCTTATATGGTCTCGAGTTCCAAAGGACTATGGAACTGCATGTGAAGATCTTGAGCCATGAAGACAGATGGGACAGTGAAATTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS GCA 90 bp | AATTTATTGTTGGTATTTTTACCTGCATCCTGTTTCTGGCTGTTCTaGTGTCTTCTGAAGGGCCTTGGCACATATACTGCTTCTAAGTGC | + |
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Preference number: 5 (lower is better) Translates to: NLLLVFLPASCFWLF*CLLKGLGTYTASKC Trigger: GCACTTAGAAGCAGTATATGTGCCAAGGCCCTTCAGAAGACAGCAGAACAGCCAGAAACAGGATGCAGGTAAAAATACCAACAATAAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS TCA 90 bp | GACCATATAAGCCACTATAAGCTTACTGGTGATTTAGCAGAAATTTaGAAAGGCGGCTACATGCAGATGTGCTTTGTGGAGCTCAAAATA | + |
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Preference number: 5 (lower is better) Translates to: DHISHYKLTGDLAEI*KGGYMQMCFVELKI Trigger: TATTTTGAGCTCCACAAAGCACATCTGCATGTAGCCGCCTTTTCAAATTTCTGCTAAATCACCAGTAAGCTTATAGTGGCTTATATGGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS GCA 72 bp | CAATTGTCATTAGCCCGTGAAGAGGTTCGCTTAGGCTaGCACAGCACAGAGTCCCAGCTGCGCCGTTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: QLSLAREEVRLG*HSTESQLRRFS Trigger: GGAGAAACGGCGCAGCTGGGACTCTGTGCTGTGGCAGCCTAAGCGAACCTCTTCACGGGCTAATGACAATTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000451341.2 ENST00000659805.1 ENST00000666721.1 |
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| CDS CAA 90 bp | AGTCTGTGGAAGGGAGATGTGTGGTACAGTGGAAGAAGTATGAGCTaGGAATTGGATGGACTGGAGCTCCTTCCTCTGGGGAAGGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SLWKGDVWYSGRSMS*ELDGLELLPLGKEQ Trigger: CTGCTCCTTCCCCAGAGGAAGGAGCTCCAGTCCATCCAATTCCAAGCTCATACTTCTTCCACTGTACCACACATCTCCCTTCCACAGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS CAA 72 bp | AAGGGAGATGTGTGGTACAGTGGAAGAAGTATGAGCTaGGAATTGGATGGACTGGAGCTCCTTCCTCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: KGDVWYSGRSMS*ELDGLELLPLG Trigger: CCCCAGAGGAAGGAGCTCCAGTCCATCCAATTCCAAGCTCATACTTCTTCCACTGTACCACACATCTCCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS TCA 72 bp | GACATTGTGGCGGTAGTTCCCAGATGTCCGAAAAGATaGAGTTATCAGTGCACGAGCAGCCAGGGCTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: DIVAVVPRCPKR*SYQCTSSQGFS Trigger: AGAAAAGCCCTGGCTGCTCGTGCACTGATAACTTCATCTTTTCGGACATCTGGGAACTACCGCCACAATGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000451341.2 ENST00000659805.1 ENST00000666721.1 |
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| CDS TCA 72 bp | TGTGGAAGGGAGATGTGTGGTACAGTGGAAGAAGTATaGGCTTGGAATTGGATGGACTGGAGCTCCTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: CGREMCGTVEEV*AWNWMDWSSFL Trigger: GAGGAAGGAGCTCCAGTCCATCCAATTCCAAGCTCATACTTCTTCCACTGTACCACACATCTCCCTTCCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS TCA 72 bp | GGTGTTTGGAAGCCTAGGCAGGTGATGTCTGTGCTGTaGGTGCAGGTTTCTGGACAAAAGGCATTGTATAAA | + |
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Preference number: 6 (lower is better) Translates to: GVWKPRQVMSVL*VQVSGQKALYK Trigger: TTTATACAATGCCTTTTGTCCAGAAACCTGCACTCACAGCACAGACATCACCTGCCTAGGCTTCCAAACACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS GCA 72 bp | CTTTCCTTGTATCTGTTCACCCCAAAGTCTCACCTCTaGCTATACCCAGAAGTAGAACCGTTCTGGTCTATC | + |
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Preference number: 6 (lower is better) Translates to: LSLYLFTPKSHL*LYPEVEPFWSI Trigger: GATAGACCAGAACGGTTCTACTTCTGGGTATAGGCAGAGGTGAGACTTTGGGGTGAACAGATACAAGGAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS GCA 72 bp | CTGTCCCATCTGTCTTCATGGCTCAAGATCTTCACATaGAGTTCCATAGTCCTTTGGAACTCGAGACCATAT | + |
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Preference number: 6 (lower is better) Translates to: LSHLSSWLKIFT*SSIVLWNSRPY Trigger: ATATGGTCTCGAGTTCCAAAGGACTATGGAACTGCATGTGAAGATCTTGAGCCATGAAGACAGATGGGACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS GCA 72 bp | ATAGTGTCAGGGGCTGCAACAAGCACATTCAGATTATaGAAGCTCCCTGTTGTTGAGGAGAAAGGAAGACTT | + |
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Preference number: 6 (lower is better) Translates to: IVSGAATSTFRL*KLPVVEEKGRL Trigger: AAGTCTTCCTTTCTCCTCAACAACAGGGAGCTTGCATAATCTGAATGTGCTTGTTGCAGCCCCTGACACTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS CAA 90 bp | AAGATGAAGTTATCAGTGCACGAGCAGCCAGGGCTTTTCTTTATGTaGATTCACCTTAGGACACAGCCCAACAATGCCTGCAATTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: KMKLSVHEQPGLFFM*IHLRTQPNNACNCH Trigger: ATGACAATTGCAGGCATTGTTGGGCTGTGTCCTAAGGTGAATCAACATAAAGAAAAGCCCTGGCTGCTCGTGCACTGATAACTTCATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000451341.2 ENST00000659805.1 ENST00000666721.1 |
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| CDS CAA 90 bp | AACCGTTCTGGTCTATCTGTAGTCAGATTAATTGAACAGGACTCTTaGAAATCCCAAGTAGTTTACGCAGCCTGTCTGTCTTTCAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: NRSGLSVVRLIEQDS*KSQVVYAACLSFRA Trigger: AGCCCTGAAAGACAGACAGGCTGCGTAAACTACTTGGGATTTCAAAGAGTCCTGTTCAATTAATCTGACTACAGATAGACCAGAACGGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS CCA 72 bp | CTGGTTAGGTTAATTTCACTGTCCCATCTGTCTTCATaGCTCAAGATCTTCACATGCAGTTCCATAGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LVRLISLSHLSS*LKIFTCSSIVL Trigger: AAGGACTATGGAACTGCATGTGAAGATCTTGAGCCATGAAGACAGATGGGACAGTGAAATTAACCTAACCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS CAA 90 bp | AAAGAGAGGATCCAAGGAAATTTTTGTTTGAGAAGGAAGTTGCCTTaGGATTCTTTTCTCTCCTTGAGTTGTTCTGCCAAGCCCTGTCAC | + |
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Preference number: 6 (lower is better) Translates to: KERIQGNFCLRRKLP*DSFLSLSCSAKPCH Trigger: GTGACAGGGCTTGGCAGAACAACTCAAGGAGAGAAAAGAATCCAAAGGCAACTTCCTTCTCAAACAAAAATTTCCTTGGATCCTCTCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS CAA 90 bp | CAGGGGCTGCAACAAGCACATTCAGATTATGCAAGCTCCCTGTTGTaGAGGAGAAAGGAAGACTTTGACTCTTTAATGTCATTTTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: QGLQQAHSDYASSLL*RRKEDFDSLMSFCE Trigger: TTCACAAAATGACATTAAAGAGTCAAAGTCTTCCTTTCTCCTCAACAACAGGGAGCTTGCATAATCTGAATGTGCTTGTTGCAGCCCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS CAA 90 bp | TGTCAGGGGCTGCAACAAGCACATTCAGATTATGCAAGCTCCCTGTaGTTGAGGAGAAAGGAAGACTTTGACTCTTTAATGTCATTTTGT | + |
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Preference number: 6 (lower is better) Translates to: CQGLQQAHSDYASSL*LRRKEDFDSLMSFC Trigger: ACAAAATGACATTAAAGAGTCAAAGTCTTCCTTTCTCCTCAACAACAGGGAGCTTGCATAATCTGAATGTGCTTGTTGCAGCCCCTGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS CCA 72 bp | AAGAAGAAAAACTGTAGTCTGTGGAAGGGAGATGTGTaGTACAGTGGAAGAAGTATGAGCTTGGAATTGGAT | + |
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Preference number: 6 (lower is better) Translates to: KKKNCSLWKGDV*YSGRSMSLELD Trigger: ATCCAATTCCAAGCTCATACTTCTTCCACTGTACCACACATCTCCCTTCCACAGACTACAGTTTTTCTTCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS CAA 72 bp | GGTCTATCTGTAGTCAGATTAATTGAACAGGACTCTTaGAAATCCCAAGTAGTTTACGCAGCCTGTCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: GLSVVRLIEQDS*KSQVVYAACLS Trigger: AGACAGACAGGCTGCGTAAACTACTTGGGATTTCAAAGAGTCCTGTTCAATTAATCTGACTACAGATAGACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS CAA 90 bp | GCAGGGATGCTCTTGTTCTGTTGCCTTGGTAACAACTTCTGTTTGTaGATAACGAAGTTTACTGTGTATTTGTCATTGTTTTCCCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: AGMLLFCCLGNNFCL*ITKFTVYLSLFSLC Trigger: GCAGAGGGAAAACAATGACAAATACACAGTAAACTTCGTTATCAACAAACAGAAGTTGTTACCAAGGCAACAGAACAAGAGCATCCCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451341.2 ENST00000666721.1 |
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| CDS CAA 90 bp | GATGCAGGGATGCTCTTGTTCTGTTGCCTTGGTAACAACTTCTGTTaGTTGATAACGAAGTTTACTGTGTATTTGTCATTGTTTTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: DAGMLLFCCLGNNFC*LITKFTVYLSLFSL Trigger: GAGGGAAAACAATGACAAATACACAGTAAACTTCGTTATCAACAAACAGAAGTTGTTACCAAGGCAACAGAACAAGAGCATCCCTGCATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451341.2 ENST00000666721.1 |
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| CDS CAA 90 bp | TTTATGAAAGAGAGGATCCAAGGAAATTTTTGTTTGAGAAGGAAGTaGCCTTTGGATTCTTTTCTCTCCTTGAGTTGTTCTGCCAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: FMKERIQGNFCLRRK*PLDSFLSLSCSAKP Trigger: GGGCTTGGCAGAACAACTCAAGGAGAGAAAAGAATCCAAAGGCAACTTCCTTCTCAAACAAAAATTTCCTTGGATCCTCTCTTTCATAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS TCA 72 bp | GTAGAACCGTTCTGGTCTATCTGTAGTCAGATTAATTaGACAGGACTCTTTGAAATCCCAAGTAGTTTACGC | + |
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Preference number: 6 (lower is better) Translates to: VEPFWSICSQIN*TGLFEIPSSLR Trigger: GCGTAAACTACTTGGGATTTCAAAGAGTCCTGTTCAATTAATCTGACTACAGATAGACCAGAACGGTTCTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS TCA 72 bp | AAATCTCCTAAAAGTACTTCCATTAAACCAAGAAGGTaGATTCAAGAGCAGCTACAATGCTTCCCTAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: KSPKSTSIKPRR*IQEQLQCFPRV Trigger: CACTCTAGGGAAGCATTGTAGCTGCTCTTGAATTCACCTTCTTGGTTTAATGGAAGTACTTTTAGGAGATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666721.1 |
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| CDS CAA 72 bp | GAGAGGATCCAAGGAAATTTTTGTTTGAGAAGGAAGTaGCCTTTGGATTCTTTTCTCTCCTTGAGTTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: ERIQGNFCLRRK*PLDSFLSLSCS Trigger: AGAACAACTCAAGGAGAGAAAAGAATCCAAAGGCAACTTCCTTCTCAAACAAAAATTTCCTTGGATCCTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659805.1 |
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| CDS CAA 72 bp | ATGCTCTTGTTCTGTTGCCTTGGTAACAACTTCTGTTaGTTGATAACGAAGTTTACTGTGTATTTGTCATTG | + |
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Preference number: 6 (lower is better) Translates to: MLLFCCLGNNFC*LITKFTVYLSL Trigger: CAATGACAAATACACAGTAAACTTCGTTATCAACAAACAGAAGTTGTTACCAAGGCAACAGAACAAGAGCAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451341.2 ENST00000666721.1 |
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