Pregenerated sensors for LINC01644 (Homo sapiens)
Ensembl gene IDs: ENSG00000218357Ensembl transcript IDs: ENST00000405369.3, ENST00000481625.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAGGACACCTCCGAGGCCGGCTCCGTGTCATCTGCTGGATGGGGCTaGACCCCAGTTGTCCTTCATGGGAATCTTCTCCTGAACCTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: EDTSEAGSVSSAGWG*TPVVLHGNLLLNLA Trigger: AGCAAGGTTCAGGAGAAGATTCCCATGAAGGACAACTGGGGTTCAGCCCCATCCAGCAGATGACACGGAGCCGGCCTCGGAGGTGTCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000405369.3 ENST00000481625.1 |
||
| CDS CCA 90 bp | AGACGGCAGAGGCAGGGCTCAAACTCAGCCGCTCTCACTCCTTGGTaGCCTCTTACTTCATCAAGGGGCCAGTCTCATCAGCTCACCCTG | + |
|
Preference number: 5 (lower is better) Translates to: RRQRQGSNSAALTPW*PLTSSRGQSHQLTL Trigger: CAGGGTGAGCTGATGAGACTGGCCCCTTGATGAAGTAAGAGGCCACCAAGGAGTGAGAGCGGCTGAGTTTGAGCCCTGCCTCTGCCGTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS CCA 90 bp | TGCAGACGGCAGAGGCAGGGCTCAAACTCAGCCGCTCTCACTCCTTaGTGGCCTCTTACTTCATCAAGGGGCCAGTCTCATCAGCTCACC | + |
|
Preference number: 5 (lower is better) Translates to: CRRQRQGSNSAALTP*WPLTSSRGQSHQLT Trigger: GGTGAGCTGATGAGACTGGCCCCTTGATGAAGTAAGAGGCCACCAAGGAGTGAGAGCGGCTGAGTTTGAGCCCTGCCTCTGCCGTCTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS GCA 90 bp | CCCTTTGAATGTCATTCACGCCTTCTTCAAGCCTATCGGATGCCATaGAGTGCAGGGGAAGGGCGTGGGCTGCAGAGGTGGAGCTGGATT | + |
|
Preference number: 5 (lower is better) Translates to: PFECHSRLLQAYRMP*SAGEGRGLQRWSWI Trigger: AATCCAGCTCCACCTCTGCAGCCCACGCCCTTCCCCTGCACTGCATGGCATCCGATAGGCTTGAAGAAGGCGTGAATGACATTCAAAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS GCA 90 bp | TTCAAGCCTATCGGATGCCATGCAGTGCAGGGGAAGGGCGTGGGCTaGAGAGGTGGAGCTGGATTTGAATTCTCTCATCTCAAGGATGGG | + |
|
Preference number: 5 (lower is better) Translates to: FKPIGCHAVQGKGVG*RGGAGFEFSHLKDG Trigger: CCCATCCTTGAGATGAGAGAATTCAAATCCAGCTCCACCTCTGCAGCCCACGCCCTTCCCCTGCACTGCATGGCATCCGATAGGCTTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS CCA 90 bp | CTCCGTGTCATCTGCTGGATGGGGCTGAACCCCAGTTGTCCTTCATaGGAATCTTCTCCTGAACCTTGCTGTGTGGGCTGCTTTCTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LRVICWMGLNPSCPS*ESSPEPCCVGCFLF Trigger: GAAGAGAAAGCAGCCCACACAGCAAGGTTCAGGAGAAGATTCCCATGAAGGACAACTGGGGTTCAGCCCCATCCAGCAGATGACACGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000405369.3 ENST00000481625.1 |
||
| CDS TCA 90 bp | AGGGATGGGATGGGAGAGGAGTGCGACTTAGATGATGTGGCCCTTTaGATGTCATTCACGCCTTCTTCAAGCCTATCGGATGCCATGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RDGMGEECDLDDVAL*MSFTPSSSLSDAMQ Trigger: CTGCATGGCATCCGATAGGCTTGAAGAAGGCGTGAATGACATTCAAAGGGCCACATCATCTAAGTCGCACTCCTCTCCCATCCCATCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS CCA 90 bp | ACCTTGCTGTGTGGGCTGCTTTCTCTTCCTTCCACCAGAGCTTCCTaGATGAAGCCCAGCATAAATGTCTTGTGCTTATCCCCATTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: TLLCGLLSLPSTRAS*MKPSINVLCLSPFW Trigger: CCAGAATGGGGATAAGCACAAGACATTTATGCTGGGCTTCATCCAGGAAGCTCTGGTGGAAGGAAGAGAAAGCAGCCCACACAGCAAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000405369.3 ENST00000481625.1 |
||
| CDS GCA 90 bp | AGTGGTGTGTCTGGGAGGCAGTCTTACAGGGTGTGTTCCCTTAGTTaGACCTCTGTTCTTGAGCTTTGTGTCTTTCTGCAAAACTTGATT | + |
|
Preference number: 5 (lower is better) Translates to: SGVSGRQSYRVCSLS*TSVLELCVFLQNLI Trigger: AATCAAGTTTTGCAGAAAGACACAAAGCTCAAGAACAGAGGTGCAACTAAGGGAACACACCCTGTAAGACTGCCTCCCAGACACACCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS TCA 72 bp | TCCGAGGCCGGCTCCGTGTCATCTGCTGGATGGGGCTaGACCCCAGTTGTCCTTCATGGGAATCTTCTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: SEAGSVSSAGWG*TPVVLHGNLLL Trigger: CAGGAGAAGATTCCCATGAAGGACAACTGGGGTTCAGCCCCATCCAGCAGATGACACGGAGCCGGCCTCGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000405369.3 ENST00000481625.1 |
||
| CDS GCA 72 bp | GTAAACTCTGAAAGGGCAGGGGCCGTGAGTGCTGACTaGTTCTCTGGTCACCGTCTCACGGCCTGCCACAGA | + |
|
Preference number: 6 (lower is better) Translates to: VNSERAGAVSAD*FSGHRLTACHR Trigger: TCTGTGGCAGGCCGTGAGACGGTGACCAGAGAAGCAGTCAGCACTCACGGCCCCTGCCCTTTCAGAGTTTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000405369.3 ENST00000481625.1 |
||
| CDS CAA 90 bp | TTGCAGACGGCAGAGGCAGGGCTCAAACTCAGCCGCTCTCACTCCTaGGTGGCCTCTTACTTCATCAAGGGGCCAGTCTCATCAGCTCAC | + |
|
Preference number: 6 (lower is better) Translates to: LQTAEAGLKLSRSHS*VASYFIKGPVSSAH Trigger: GTGAGCTGATGAGACTGGCCCCTTGATGAAGTAAGAGGCCACCAAGGAGTGAGAGCGGCTGAGTTTGAGCCCTGCCTCTGCCGTCTGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS CAA 72 bp | GCAGAGGCAGGGCTCAAACTCAGCCGCTCTCACTCCTaGGTGGCCTCTTACTTCATCAAGGGGCCAGTCTCA | + |
|
Preference number: 6 (lower is better) Translates to: AEAGLKLSRSHS*VASYFIKGPVS Trigger: TGAGACTGGCCCCTTGATGAAGTAAGAGGCCACCAAGGAGTGAGAGCGGCTGAGTTTGAGCCCTGCCTCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS CCA 72 bp | AGGCAGGGCTCAAACTCAGCCGCTCTCACTCCTTGGTaGCCTCTTACTTCATCAAGGGGCCAGTCTCATCAG | + |
|
Preference number: 6 (lower is better) Translates to: RQGSNSAALTPW*PLTSSRGQSHQ Trigger: CTGATGAGACTGGCCCCTTGATGAAGTAAGAGGCCACCAAGGAGTGAGAGCGGCTGAGTTTGAGCCCTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS CCA 72 bp | CAGAGGCAGGGCTCAAACTCAGCCGCTCTCACTCCTTaGTGGCCTCTTACTTCATCAAGGGGCCAGTCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: QRQGSNSAALTP*WPLTSSRGQSH Trigger: ATGAGACTGGCCCCTTGATGAAGTAAGAGGCCACCAAGGAGTGAGAGCGGCTGAGTTTGAGCCCTGCCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS CAA 72 bp | AGGGGAAGGGCGTGGGCTGCAGAGGTGGAGCTGGATTaGAATTCTCTCATCTCAAGGATGGGAGATCTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: RGRAWAAEVELD*NSLISRMGDLR Trigger: CCTCAGATCTCCCATCCTTGAGATGAGAGAATTCAAATCCAGCTCCACCTCTGCAGCCCACGCCCTTCCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS TCA 72 bp | GCTGAACCCCAGTTGTCCTTCATGGGAATCTTCTCCTaGACCTTGCTGTGTGGGCTGCTTTCTCTTCCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: AEPQLSFMGIFS*TLLCGLLSLPS Trigger: GGAAGGAAGAGAAAGCAGCCCACACAGCAAGGTTCAGGAGAAGATTCCCATGAAGGACAACTGGGGTTCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000405369.3 ENST00000481625.1 |
||
| CDS GCA 72 bp | CCCAGTTGTCCTTCATGGGAATCTTCTCCTGAACCTTaGTGTGTGGGCTGCTTTCTCTTCCTTCCACCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: PSCPSWESSPEP*CVGCFLFLPPE Trigger: CTCTGGTGGAAGGAAGAGAAAGCAGCCCACACAGCAAGGTTCAGGAGAAGATTCCCATGAAGGACAACTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000405369.3 ENST00000481625.1 |
||
| CDS CCA 72 bp | CGGTCTCAAATCCTTTGGGGTGAGAATTCTGAGTCCTaGGGGGCATTTATGAGGGAAGCCACACAGAGTGTT | + |
|
Preference number: 6 (lower is better) Translates to: RSQILWGENSES*GAFMREATQSV Trigger: AACACTCTGTGTGGCTTCCCTCATAAATGCCCCCCAGGACTCAGAATTCTCACCCCAAAGGATTTGAGACCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000481625.1 |
||
| CDS CAA 90 bp | CTTCCTTCCACCAGAGCTTCCTGGATGAAGCCCAGCATAAATGTCTaGTGCTTATCCCCATTCTGGAGGCTTCCAAGCAAGCGTAAACTC | + |
|
Preference number: 6 (lower is better) Translates to: LPSTRASWMKPSINV*CLSPFWRLPSKRKL Trigger: GAGTTTACGCTTGCTTGGAAGCCTCCAGAATGGGGATAAGCACAAGACATTTATGCTGGGCTTCATCCAGGAAGCTCTGGTGGAAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000405369.3 ENST00000481625.1 |
||
| CDS TCA 72 bp | AACAAGGGATGGGATGGGAGAGGAGTGCGACTTAGATaGTGTGGCCCTTTGAATGTCATTCACGCCTTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: NKGWDGRGVRLR*CGPLNVIHAFF Trigger: GAAGAAGGCGTGAATGACATTCAAAGGGCCACATCATCTAAGTCGCACTCCTCTCCCATCCCATCCCTTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS GCA 72 bp | AGAGCTTCCTGGATGAAGCCCAGCATAAATGTCTTGTaGTTATCCCCATTCTGGAGGCTTCCAAGCAAGCGT | + |
|
Preference number: 6 (lower is better) Translates to: RASWMKPSINVL*LSPFWRLPSKR Trigger: ACGCTTGCTTGGAAGCCTCCAGAATGGGGATAAGCACAAGACATTTATGCTGGGCTTCATCCAGGAAGCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000405369.3 ENST00000481625.1 |
||
| CDS CAA 72 bp | ACCAGAGCTTCCTGGATGAAGCCCAGCATAAATGTCTaGTGCTTATCCCCATTCTGGAGGCTTCCAAGCAAG | + |
|
Preference number: 6 (lower is better) Translates to: TRASWMKPSINV*CLSPFWRLPSK Trigger: CTTGCTTGGAAGCCTCCAGAATGGGGATAAGCACAAGACATTTATGCTGGGCTTCATCCAGGAAGCTCTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000405369.3 ENST00000481625.1 |
||
| CDS TCA 72 bp | ATGGGAGAGGAGTGCGACTTAGATGATGTGGCCCTTTaGATGTCATTCACGCCTTCTTCAAGCCTATCGGAT | + |
|
Preference number: 6 (lower is better) Translates to: MGEECDLDDVAL*MSFTPSSSLSD Trigger: ATCCGATAGGCTTGAAGAAGGCGTGAATGACATTCAAAGGGCCACATCATCTAAGTCGCACTCCTCTCCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||
| CDS GCA 72 bp | TCTGGGAGGCAGTCTTACAGGGTGTGTTCCCTTAGTTaGACCTCTGTTCTTGAGCTTTGTGTCTTTCTGCAA | + |
|
Preference number: 6 (lower is better) Translates to: SGRQSYRVCSLS*TSVLELCVFLQ Trigger: TTGCAGAAAGACACAAAGCTCAAGAACAGAGGTGCAACTAAGGGAACACACCCTGTAAGACTGCCTCCCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000405369.3 |
||