Pregenerated sensors for LINC01635 (Homo sapiens)
Ensembl gene IDs: ENSG00000228397Ensembl transcript IDs: ENST00000455966.2, ENST00000635097.2, ENST00000655353.1, ENST00000655655.1, ENST00000657670.1, ENST00000667783.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATTCTGGTAGGTAGGGGTAGGGCCAGAGCAAGGAGTCCTGGTTTGTaGACCACCAGCTGGCCGTCTAGGAGTTTACAGACCAGCAGTGGC | + |
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Preference number: 5 (lower is better) Translates to: ILVGRGRARARSPGL*TTSWPSRSLQTSSG Trigger: GCCACTGCTGGTCTGTAAACTCCTAGACGGCCAGCTGGTGGTTCACAAACCAGGACTCCTTGCTCTGGCCCTACCCCTACCTACCAGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000455966.2 ENST00000635097.2 ENST00000655353.1 ENST00000655655.1 ENST00000657670.1 ENST00000667783.1 |
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| CDS TCA 90 bp | CTCCAAACAGCAGCCAGCCACCCCTCTCTCTTGGTTTCCTTCCTTTaGGTGGTGCAAAGGCTTAAGGGTGTAACCTCAGAATGGGGCCCT | + |
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Preference number: 5 (lower is better) Translates to: LQTAASHPSLLVSFL*VVQRLKGVTSEWGP Trigger: AGGGCCCCATTCTGAGGTTACACCCTTAAGCCTTTGCACCACTCAAAGGAAGGAAACCAAGAGAGAGGGGTGGCTGGCTGCTGTTTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000635097.2 ENST00000655353.1 ENST00000655655.1 ENST00000657670.1 ENST00000667783.1 |
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| CDS TCA 90 bp | CTGCTGTTTGCGTACAATGAGGCGGGACCTATAGACTGTATCCACTaGCTCATCTGGAGTGATTCCGCGGGGCGCCAATACAAGGACCAC | + |
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Preference number: 5 (lower is better) Translates to: LLFAYNEAGPIDCIH*LIWSDSAGRQYKDH Trigger: GTGGTCCTTGTATTGGCGCCCCGCGGAATCACTCCAGATGAGTCAGTGGATACAGTCTATAGGTCCCGCCTCATTGTACGCAAACAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000655655.1 ENST00000667783.1 |
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| CDS CCA 90 bp | CCCAAGAACATTGGCTCTGGAGCAATAACCCAGCAATGGGGGCTTTaGGGTGTCCCTCTTAATCCGGTAGCTCAGCCCATTCGGATATGC | + |
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Preference number: 5 (lower is better) Translates to: PKNIGSGAITQQWGL*GVPLNPVAQPIRIC Trigger: GCATATCCGAATGGGCTGAGCTACCGGATTAAGAGGGACACCCCAAAGCCCCCATTGCTGGGTTATTGCTCCAGAGCCAATGTTCTTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000455966.2 ENST00000635097.2 ENST00000655353.1 ENST00000655655.1 ENST00000657670.1 ENST00000667783.1 |
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| CDS TCA 90 bp | GCAACTGGAAAAGTCAATGAGGCGGGACCTATAGACTGTATCCACTaGCTCATCTGGAGTGATTCCGCGGGGCGCCAATACAAGGACCAC | + |
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Preference number: 5 (lower is better) Translates to: ATGKVNEAGPIDCIH*LIWSDSAGRQYKDH Trigger: GTGGTCCTTGTATTGGCGCCCCGCGGAATCACTCCAGATGAGTCAGTGGATACAGTCTATAGGTCCCGCCTCATTGACTTTTCCAGTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000635097.2 |
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| CDS TCA 90 bp | ATTCGGATATGCCAGAATGAGGCGGGACCTATAGACTGTATCCACTaGCTCATCTGGAGTGATTCCGCGGGGCGCCAATACAAGGACCAC | + |
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Preference number: 5 (lower is better) Translates to: IRICQNEAGPIDCIH*LIWSDSAGRQYKDH Trigger: GTGGTCCTTGTATTGGCGCCCCGCGGAATCACTCCAGATGAGTCAGTGGATACAGTCTATAGGTCCCGCCTCATTCTGGCATATCCGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657670.1 |
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| CDS GCA 90 bp | CTTTGGGGTGTCCCTCTTAATCCGGTAGCTCAGCCCATTCGGATATaGCAGCTGGAAAGAGAGAGGGAGAAGTCAACTGAGTACCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: LWGVPLNPVAQPIRI*QLEREREKSTEYLS Trigger: AGAGAGGTACTCAGTTGACTTCTCCCTCTCTCTTTCCAGCTGGCATATCCGAATGGGCTGAGCTACCGGATTAAGAGGGACACCCCAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655655.1 |
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| CDS CCA 90 bp | CGTAGTCTGGTAGCAACTGGAAAAGTCCTTTCATCCTTGTGGCTTTaGGCAAGTCCCCGCCCTCCGAGCCTCACTTTGCTTATCTGTGAA | + |
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Preference number: 5 (lower is better) Translates to: RSLVATGKVLSSLWL*ASPRPPSLTLLICE Trigger: TTCACAGATAAGCAAAGTGAGGCTCGGAGGGCGGGGACTTGCCCAAAGCCACAAGGATGAAAGGACTTTTCCAGTTGCTACCAGACTACG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000455966.2 |
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| CDS TCA 90 bp | GCTGTGTCATTGAACCTGTGTGATCAGACGCAAACCAGATCAGTATaGCTTCAAAGCTTCATCTTTGAGATGGAGTCTTGCTCCCTCGTC | + |
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Preference number: 5 (lower is better) Translates to: AVSLNLCDQTQTRSV*LQSFIFEMESCSLV Trigger: GACGAGGGAGCAAGACTCCATCTCAAAGATGAAGCTTTGAAGTCATACTGATCTGGTTTGCGTCTGATCACACAGGTTCAATGACACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655655.1 |
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| CDS TCA 90 bp | TTAGCATCTCTGCTTCCTCTAGCCGGCTGTGTCATTGAACCTGTGTaGTCAGACGCAAACCAGATCAGTATGACTTCAAAGCTTCATCTT | + |
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Preference number: 5 (lower is better) Translates to: LASLLPLAGCVIEPV*SDANQISMTSKLHL Trigger: AAGATGAAGCTTTGAAGTCATACTGATCTGGTTTGCGTCTGATCACACAGGTTCAATGACACAGCCGGCTAGAGGAAGCAGAGATGCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655655.1 |
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| CDS CAA 72 bp | CGTAGTCTGGTAGCAACTGGAAAAGTCCTTTCATCCTaGTGGCTTTGGGCAAGTCCCCGCCCTCCGAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: RSLVATGKVLSS*WLWASPRPPSL Trigger: GAGGCTCGGAGGGCGGGGACTTGCCCAAAGCCACAAGGATGAAAGGACTTTTCCAGTTGCTACCAGACTACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000455966.2 |
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| CDS TCA 72 bp | TGCCAGAATGAGGCGGGACCTATAGACTGTATCCACTaGCTCATCTGGAGTGATTCCGCGGGGCGCCAATAC | + |
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Preference number: 6 (lower is better) Translates to: CQNEAGPIDCIH*LIWSDSAGRQY Trigger: GTATTGGCGCCCCGCGGAATCACTCCAGATGAGTCAGTGGATACAGTCTATAGGTCCCGCCTCATTCTGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657670.1 |
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| CDS TCA 72 bp | GCGTACAATGAGGCGGGACCTATAGACTGTATCCACTaGCTCATCTGGAGTGATTCCGCGGGGCGCCAATAC | + |
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Preference number: 6 (lower is better) Translates to: AYNEAGPIDCIH*LIWSDSAGRQY Trigger: GTATTGGCGCCCCGCGGAATCACTCCAGATGAGTCAGTGGATACAGTCTATAGGTCCCGCCTCATTGTACGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000655655.1 ENST00000667783.1 |
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| CDS GCA 72 bp | GGCTTTGGGCAAGTCCCCGCCCTCCGAGCCTCACTTTaGTTATCTGTGAATGGAAATAACAGTGCCTACCCC | + |
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Preference number: 6 (lower is better) Translates to: GFGQVPALRASL*LSVNGNNSAYP Trigger: GGGGTAGGCACTGTTATTTCCATTCACAGATAAGCAAAGTGAGGCTCGGAGGGCGGGGACTTGCCCAAAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455966.2 |
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| CDS CAA 72 bp | GGTAGCAACTGGAAAAGTCCTTTCATCCTTGTGGCTTaGGGCAAGTCCCCGCCCTCCGAGCCTCACTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: GSNWKSPFILVA*GKSPPSEPHFA Trigger: AGCAAAGTGAGGCTCGGAGGGCGGGGACTTGCCCAAAGCCACAAGGATGAAAGGACTTTTCCAGTTGCTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000455966.2 |
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| CDS TCA 72 bp | GGGACCTATAGACTGTATCCACTGACTCATCTGGAGTaGTTCCGCGGGGCGCCAATACAAGGACCACTGTCT | + |
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Preference number: 6 (lower is better) Translates to: GTYRLYPLTHLE*FRGAPIQGPLS Trigger: AGACAGTGGTCCTTGTATTGGCGCCCCGCGGAATCACTCCAGATGAGTCAGTGGATACAGTCTATAGGTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000635097.2 ENST00000655353.1 ENST00000655655.1 ENST00000657670.1 ENST00000667783.1 |
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| CDS TCA 72 bp | CCCCACGGCCATATGCCCACTGCTGTTTGCGTACAATaGGGCGGGACCTATAGACTGTATCCACTGACTCAT | + |
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Preference number: 6 (lower is better) Translates to: PHGHMPTAVCVQ*GGTYRLYPLTH Trigger: ATGAGTCAGTGGATACAGTCTATAGGTCCCGCCTCATTGTACGCAAACAGCAGTGGGCATATGGCCGTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000655655.1 ENST00000667783.1 |
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| CDS CCA 72 bp | ATTGGCTCTGGAGCAATAACCCAGCAATGGGGGCTTTaGGGTGTCCCTCTTAATCCGGTAGCTCAGCCCATT | + |
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Preference number: 6 (lower is better) Translates to: IGSGAITQQWGL*GVPLNPVAQPI Trigger: AATGGGCTGAGCTACCGGATTAAGAGGGACACCCCAAAGCCCCCATTGCTGGGTTATTGCTCCAGAGCCAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000455966.2 ENST00000635097.2 ENST00000655353.1 ENST00000655655.1 ENST00000657670.1 ENST00000667783.1 |
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| CDS CCA 72 bp | CCCAAGAACATTGGCTCTGGAGCAATAACCCAGCAATaGGGGCTTTGGGGTGTCCCTCTTAATCCGGTAGCT | + |
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Preference number: 6 (lower is better) Translates to: PKNIGSGAITQQ*GLWGVPLNPVA Trigger: AGCTACCGGATTAAGAGGGACACCCCAAAGCCCCCATTGCTGGGTTATTGCTCCAGAGCCAATGTTCTTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000455966.2 ENST00000635097.2 ENST00000655353.1 ENST00000655655.1 ENST00000657670.1 ENST00000667783.1 |
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| CDS TCA 72 bp | GCAGCCAGCCACCCCTCTCTCTTGGTTTCCTTCCTTTaGGTGGTGCAAAGGCTTAAGGGTGTAACCTCAGAA | + |
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Preference number: 6 (lower is better) Translates to: AASHPSLLVSFL*VVQRLKGVTSE Trigger: TTCTGAGGTTACACCCTTAAGCCTTTGCACCACTCAAAGGAAGGAAACCAAGAGAGAGGGGTGGCTGGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000635097.2 ENST00000655353.1 ENST00000655655.1 ENST00000657670.1 ENST00000667783.1 |
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| CDS TCA 72 bp | AAAGTCAATGAGGCGGGACCTATAGACTGTATCCACTaGCTCATCTGGAGTGATTCCGCGGGGCGCCAATAC | + |
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Preference number: 6 (lower is better) Translates to: KVNEAGPIDCIH*LIWSDSAGRQY Trigger: GTATTGGCGCCCCGCGGAATCACTCCAGATGAGTCAGTGGATACAGTCTATAGGTCCCGCCTCATTGACTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000635097.2 |
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| CDS CCA 72 bp | ACTGTCTCCAAACAGCAGCCAGCCACCCCTCTCTCTTaGTTTCCTTCCTTTGAGTGGTGCAAAGGCTTAAGG | + |
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Preference number: 6 (lower is better) Translates to: TVSKQQPATPLS*FPSFEWCKGLR Trigger: CCTTAAGCCTTTGCACCACTCAAAGGAAGGAAACCAAGAGAGAGGGGTGGCTGGCTGCTGTTTGGAGACAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000635097.2 ENST00000655353.1 ENST00000655655.1 ENST00000657670.1 ENST00000667783.1 |
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| CDS CAA 90 bp | CCACCAGCTGGCCGTCTAGGAGTTTACAGACCAGCAGTGGCAATGTaGACAAAGGGCATATCTTCCTTTCCCCAAGAACATTGGCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: PPAGRLGVYRPAVAM*TKGISSFPQEHWLW Trigger: CCAGAGCCAATGTTCTTGGGGAAAGGAAGATATGCCCTTTGTCAACATTGCCACTGCTGGTCTGTAAACTCCTAGACGGCCAGCTGGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000455966.2 ENST00000635097.2 ENST00000655353.1 ENST00000655655.1 ENST00000657670.1 ENST00000667783.1 |
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| CDS TCA 72 bp | GCAAACCAGATCAGTATGACTTCAAAGCTTCATCTTTaGGATGGAGTCTTGCTCCCTCGTCCGGGCTGGAGT | + |
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Preference number: 6 (lower is better) Translates to: ANQISMTSKLHL*DGVLLPRPGWS Trigger: ACTCCAGCCCGGACGAGGGAGCAAGACTCCATCTCAAAGATGAAGCTTTGAAGTCATACTGATCTGGTTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655655.1 |
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| CDS TCA 72 bp | CTGCTTCCTCTAGCCGGCTGTGTCATTGAACCTGTGTaGTCAGACGCAAACCAGATCAGTATGACTTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: LLPLAGCVIEPV*SDANQISMTSK Trigger: CTTTGAAGTCATACTGATCTGGTTTGCGTCTGATCACACAGGTTCAATGACACAGCCGGCTAGAGGAAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655655.1 |
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| CDS TCA 72 bp | GTTAGCATCTCTGCTTCCTCTAGCCGGCTGTGTCATTaGACCTGTGTGATCAGACGCAAACCAGATCAGTAT | + |
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Preference number: 6 (lower is better) Translates to: VSISASSSRLCH*TCVIRRKPDQY Trigger: ATACTGATCTGGTTTGCGTCTGATCACACAGGTTCAATGACACAGCCGGCTAGAGGAAGCAGAGATGCTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655655.1 |
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| CDS GCA 72 bp | TCAGCTGTGGGCGAGCTCCTAGAGTATCTTAATTCCTaGTTCATCTCTTTCCATTTTGCAGTTGGGCAAACT | + |
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Preference number: 6 (lower is better) Translates to: SAVGELLEYLNS*FISFHFAVGQT Trigger: AGTTTGCCCAACTGCAAAATGGAAAGAGATGAAGCAGGAATTAAGATACTCTAGGAGCTCGCCCACAGCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000635097.2 ENST00000655353.1 ENST00000655655.1 ENST00000657670.1 ENST00000667783.1 |
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| CDS TCA 72 bp | TTGAACCTGTGTGATCAGACGCAAACCAGATCAGTATaGCTTCAAAGCTTCATCTTTGAGATGGAGTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: LNLCDQTQTRSV*LQSFIFEMESC Trigger: GCAAGACTCCATCTCAAAGATGAAGCTTTGAAGTCATACTGATCTGGTTTGCGTCTGATCACACAGGTTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655655.1 |
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