Pregenerated sensors for LINC01629 (Homo sapiens)
Ensembl gene IDs: ENSG00000258602Ensembl transcript IDs: ENST00000553613.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATAGGCTGTTCGCTTGGCCTGGAAAATCTCTTCCTTGCTCATGGCTaGCTTCAAGTCATCTTTCAGACCTGGATCCAGCTTCTCTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: IGCSLGLENLFLAHG*LQVIFQTWIQLLSL Trigger: GAGGGAGAGAAGCTGGATCCAGGTCTGAAAGATGACTTGAAGTCAGCCATGAGCAAGGAAGAGATTTTCCAGGCCAAGCGAACAGCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS GCA 90 bp | CCTAGACCTCCATCCTCAAACCACAGGATCCAAGGGAAGGCAGAATaGGTCCTCTGTAGCTTGGATGGTTCTGTGGGTCTAATTGTTCAT | + |
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Preference number: 5 (lower is better) Translates to: PRPPSSNHRIQGKAE*VLCSLDGSVGLIVH Trigger: ATGAACAATTAGACCCACAGAACCATCCAAGCTACAGAGGACGCATTCTGCCTTCCCTTGGATCCTGTGGTTTGAGGATGGAGGTCTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS TCA 90 bp | TCACTTGATTGCATCTCTGTATCCCAGGTTTCTAGAAGCTCTGTATaGGCAAGAACCTTGCCTGTCTTGCACTGCATTCCTAGAGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: SLDCISVSQVSRSSV*ARTLPVLHCIPRAR Trigger: CCTGGCTCTAGGAATGCAGTGCAAGACAGGCAAGGTTCTTGCTCATACAGAGCTTCTAGAAACCTGGGATACAGAGATGCAATCAAGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS CCA 90 bp | GTCTATGGTCTTGGCCGTACCCATTTTCTTTATAGGCTGTTCGCTTaGCCTGGAAAATCTCTTCCTTGCTCATGGCTGACTTCAAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: VYGLGRTHFLYRLFA*PGKSLPCSWLTSSH Trigger: ATGACTTGAAGTCAGCCATGAGCAAGGAAGAGATTTTCCAGGCCAAGCGAACAGCCTATAAAGAAAATGGGTACGGCCAAGACCATAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS CCA 72 bp | CTGGCTCCCCAGGGCTGGCTTAGCTGTGCCTCTCTGTaGGCTTGTCAAGAACCATGTGTTCAATGGCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: LAPQGWLSCASL*ACQEPCVQWQS Trigger: GCTCTGCCATTGAACACATGGTTCTTGACAAGCCCACAGAGAGGCACAGCTAAGCCAGCCCTGGGGAGCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS GCA 72 bp | CTAGAAGCTCTGTATGAGCAAGAACCTTGCCTGTCTTaGACTGCATTCCTAGAGCCAGGAAGCCCAGAGGTC | + |
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Preference number: 6 (lower is better) Translates to: LEALYEQEPCLS*TAFLEPGSPEV Trigger: GACCTCTGGGCTTCCTGGCTCTAGGAATGCAGTGCAAGACAGGCAAGGTTCTTGCTCATACAGAGCTTCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS GCA 72 bp | CCCAGGTTTCTAGAAGCTCTGTATGAGCAAGAACCTTaGCTGTCTTGCACTGCATTCCTAGAGCCAGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: PRFLEALYEQEP*LSCTAFLEPGS Trigger: GCTTCCTGGCTCTAGGAATGCAGTGCAAGACAGGCAAGGTTCTTGCTCATACAGAGCTTCTAGAAACCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS TCA 72 bp | GGAAGCCCAGAGGTCTGCGGTTCCAGGGTTGGTAAATaGAGTGACCACTCTATGTCTATTTCTCTCTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: GSPEVCGSRVGK*SDHSMSISLLS Trigger: TGACAAGAGAGAAATAGACATAGAGTGGTCACTTCATTTACCAACCCTGGAACCGCAGACCTCTGGGCTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS TCA 72 bp | TCGCTTGGCCTGGAAAATCTCTTCCTTGCTCATGGCTaGCTTCAAGTCATCTTTCAGACCTGGATCCAGCTT | + |
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Preference number: 6 (lower is better) Translates to: SLGLENLFLAHG*LQVIFQTWIQL Trigger: AAGCTGGATCCAGGTCTGAAAGATGACTTGAAGTCAGCCATGAGCAAGGAAGAGATTTTCCAGGCCAAGCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS CCA 72 bp | CTGTTCGCTTGGCCTGGAAAATCTCTTCCTTGCTCATaGCTGACTTCAAGTCATCTTTCAGACCTGGATCCA | + |
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Preference number: 6 (lower is better) Translates to: LFAWPGKSLPCS*LTSSHLSDLDP Trigger: TGGATCCAGGTCTGAAAGATGACTTGAAGTCAGCCATGAGCAAGGAAGAGATTTTCCAGGCCAAGCGAACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS CCA 72 bp | CTTGGCCGTACCCATTTTCTTTATAGGCTGTTCGCTTaGCCTGGAAAATCTCTTCCTTGCTCATGGCTGACT | + |
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Preference number: 6 (lower is better) Translates to: LGRTHFLYRLFA*PGKSLPCSWLT Trigger: AGTCAGCCATGAGCAAGGAAGAGATTTTCCAGGCCAAGCGAACAGCCTATAAAGAAAATGGGTACGGCCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS CAA 72 bp | AGGATCCAAGGGAAGGCAGAATGCGTCCTCTGTAGCTaGGATGGTTCTGTGGGTCTAATTGTTCATCTGACA | + |
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Preference number: 6 (lower is better) Translates to: RIQGKAECVLCS*DGSVGLIVHLT Trigger: TGTCAGATGAACAATTAGACCCACAGAACCATCCAAGCTACAGAGGACGCATTCTGCCTTCCCTTGGATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS CAA 90 bp | TCAAACCACAGGATCCAAGGGAAGGCAGAATGCGTCCTCTGTAGCTaGGATGGTTCTGTGGGTCTAATTGTTCATCTGACAATCACTAGG | + |
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Preference number: 6 (lower is better) Translates to: SNHRIQGKAECVLCS*DGSVGLIVHLTITR Trigger: CCTAGTGATTGTCAGATGAACAATTAGACCCACAGAACCATCCAAGCTACAGAGGACGCATTCTGCCTTCCCTTGGATCCTGTGGTTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS GCA 72 bp | TATAGGCTGTTCGCTTGGCCTGGAAAATCTCTTCCTTaGTCATGGCTGACTTCAAGTCATCTTTCAGACCTG | + |
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Preference number: 6 (lower is better) Translates to: YRLFAWPGKSLP*SWLTSSHLSDL Trigger: CAGGTCTGAAAGATGACTTGAAGTCAGCCATGAGCAAGGAAGAGATTTTCCAGGCCAAGCGAACAGCCTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS CAA 90 bp | TCTGTGGGTCTAATTGTTCATCTGACAATCACTAGGTCTATGGTCTaGGCCGTACCCATTTTCTTTATAGGCTGTTCGCTTGGCCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: SVGLIVHLTITRSMV*AVPIFFIGCSLGLE Trigger: TTCCAGGCCAAGCGAACAGCCTATAAAGAAAATGGGTACGGCCAAGACCATAGACCTAGTGATTGTCAGATGAACAATTAGACCCACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS CCA 72 bp | GCCTCTCTGTGGGCTTGTCAAGAACCATGTGTTCAATaGCAGAGCCTTCATCCATGTGTTTTATCACTTGAT | + |
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Preference number: 6 (lower is better) Translates to: ASLWACQEPCVQ*QSLHPCVLSLD Trigger: ATCAAGTGATAAAACACATGGATGAAGGCTCTGCCATTGAACACATGGTTCTTGACAAGCCCACAGAGAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS GCA 72 bp | TGGCAGAGCCTTCATCCATGTGTTTTATCACTTGATTaGATCTCTGTATCCCAGGTTTCTAGAAGCTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: WQSLHPCVLSLD*ISVSQVSRSSV Trigger: TACAGAGCTTCTAGAAACCTGGGATACAGAGATGCAATCAAGTGATAAAACACATGGATGAAGGCTCTGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS CAA 72 bp | TTCAATGGCAGAGCCTTCATCCATGTGTTTTATCACTaGATTGCATCTCTGTATCCCAGGTTTCTAGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: FNGRAFIHVFYH*IASLYPRFLEA Trigger: AGCTTCTAGAAACCTGGGATACAGAGATGCAATCAAGTGATAAAACACATGGATGAAGGCTCTGCCATTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS CAA 72 bp | CTAATTGTTCATCTGACAATCACTAGGTCTATGGTCTaGGCCGTACCCATTTTCTTTATAGGCTGTTCGCTT | + |
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Preference number: 6 (lower is better) Translates to: LIVHLTITRSMV*AVPIFFIGCSL Trigger: AAGCGAACAGCCTATAAAGAAAATGGGTACGGCCAAGACCATAGACCTAGTGATTGTCAGATGAACAATTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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| CDS TCA 72 bp | GAAGTGACCACTCTATGTCTATTTCTCTCTTGTCATTaGCACCCTTTGGAAGTGTCTTTTTCTACCTTAGTC | + |
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Preference number: 6 (lower is better) Translates to: EVTTLCLFLSCH*HPLEVSFSTLV Trigger: GACTAAGGTAGAAAAAGACACTTCCAAAGGGTGTCAATGACAAGAGAGAAATAGACATAGAGTGGTCACTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553613.1 |
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