Pregenerated sensors for LINC01626 (Homo sapiens)
Ensembl gene IDs: ENSG00000223765Ensembl transcript IDs: ENST00000431997.2, ENST00000654769.1, ENST00000663404.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GACCCAGAAGAACAGCAGCTGGGACACCTGGTTGATTATGTTCCCTaGGCAGGAGATATGAGCCATGGATTTTCATGTCACCATGGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: DPEEQQLGHLVDYVP*AGDMSHGFSCHHGH Trigger: ATGACCATGGTGACATGAAAATCCATGGCTCATATCTCCTGCTCAGGGAACATAATCAACCAGGTGTCCCAGCTGCTGTTCTTCTGGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431997.2 |
||
| CDS TCA 90 bp | CAGAGAAACTGGGCCATGAAGACAAGGGAATCCTTCAGAGTGGAGTaGTTCCTAGCACCCTATGACATTGACAAAGGAAAAGGTAAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: QRNWAMKTRESFRVE*FLAPYDIDKGKGKW Trigger: CCACTTACCTTTTCCTTTGTCAATGTCATAGGGTGCTAGGAATCACTCCACTCTGAAGGATTCCCTTGTCTTCATGGCCCAGTTTCTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663404.1 |
||
| CDS CCA 90 bp | TTAGGTCAAGGTCACCTGGTTGTGGAGTTCCATGTGTTCCAGAAATaGACCTGCATTAGTTGTCCTGTTATGCTCAGTTGCTGCTTGAGT | + |
|
Preference number: 5 (lower is better) Translates to: LGQGHLVVEFHVFQK*TCISCPVMLSCCLS Trigger: ACTCAAGCAGCAACTGAGCATAACAGGACAACTAATGCAGGTCCATTTCTGGAACACATGGAACTCCACAACCAGGTGACCTTGACCTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654769.1 ENST00000663404.1 |
||
| CDS TCA 90 bp | AGCAGCTGGGACACCTGGTTGATTATGTTCCCTGAGCAGGAGATATaGGCCATGGATTTTCATGTCACCATGGTCATCATAAGAATAAAC | + |
|
Preference number: 5 (lower is better) Translates to: SSWDTWLIMFPEQEI*AMDFHVTMVIIRIN Trigger: GTTTATTCTTATGATGACCATGGTGACATGAAAATCCATGGCTCATATCTCCTGCTCAGGGAACATAATCAACCAGGTGTCCCAGCTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431997.2 |
||
| CDS TCA 72 bp | GAACAGCAGCTGGGACACCTGGTTGATTATGTTCCCTaGGCAGGAGATATGAGCCATGGATTTTCATGTCAC | + |
|
Preference number: 6 (lower is better) Translates to: EQQLGHLVDYVP*AGDMSHGFSCH Trigger: GTGACATGAAAATCCATGGCTCATATCTCCTGCTCAGGGAACATAATCAACCAGGTGTCCCAGCTGCTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431997.2 |
||
| CDS TCA 72 bp | GAACAGCAGCTGGGACACCTGGTTGATTATGTTCCCTaGGCAGGAGATATGAGCCATGGATTTTCATGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: EQQLGHLVDYVP*AGDMSHGFSCL Trigger: GAGACATGAAAATCCATGGCTCATATCTCCTGCTCAGGGAACATAATCAACCAGGTGTCCCAGCTGCTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654769.1 ENST00000663404.1 |
||
| CDS CCA 72 bp | GGTCACCTGGTTGTGGAGTTCCATGTGTTCCAGAAATaGACCTGCATTAGTTGTCCTGTTATGCTCAGTTGC | + |
|
Preference number: 6 (lower is better) Translates to: GHLVVEFHVFQK*TCISCPVMLSC Trigger: GCAACTGAGCATAACAGGACAACTAATGCAGGTCCATTTCTGGAACACATGGAACTCCACAACCAGGTGACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654769.1 ENST00000663404.1 |
||
| CDS TCA 72 bp | CCTGCATTAGTTGTCCTGTTATGCTCAGTTGCTGCTTaGGTAGCCTGTGGGAAATGTGGCCTTAACATGAAC | + |
|
Preference number: 6 (lower is better) Translates to: PALVVLLCSVAA*VACGKCGLNMN Trigger: GTTCATGTTAAGGCCACATTTCCCACAGGCTACTCAAGCAGCAACTGAGCATAACAGGACAACTAATGCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000431997.2 ENST00000654769.1 ENST00000663404.1 |
||
| CDS GCA 72 bp | CTGGTTGTGGAGTTCCATGTGTTCCAGAAATGGACCTaGATTAGTTGTCCTGTTATGCTCAGTTGCTGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: LVVEFHVFQKWT*ISCPVMLSCCL Trigger: CAAGCAGCAACTGAGCATAACAGGACAACTAATGCAGGTCCATTTCTGGAACACATGGAACTCCACAACCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000431997.2 ENST00000654769.1 ENST00000663404.1 |
||
| CDS TCA 72 bp | CATAAGAATAAACACGGTGTCAGAGAAACTGGGCCATaGAGACAAGGGAATCCTTCAGAGTGGAGTGATTCC | + |
|
Preference number: 6 (lower is better) Translates to: HKNKHGVRETGP*RQGNPSEWSDS Trigger: GGAATCACTCCACTCTGAAGGATTCCCTTGTCTTCATGGCCCAGTTTCTCTGACACCGTGTTTATTCTTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000431997.2 ENST00000663404.1 |
||
| CDS TCA 72 bp | TGGGCCATGAAGACAAGGGAATCCTTCAGAGTGGAGTaGTTCCTAGCACCCTATGACATTGACAAAGGAAAA | + |
|
Preference number: 6 (lower is better) Translates to: WAMKTRESFRVE*FLAPYDIDKGK Trigger: TTTTCCTTTGTCAATGTCATAGGGTGCTAGGAATCACTCCACTCTGAAGGATTCCCTTGTCTTCATGGCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663404.1 |
||
| CDS TCA 72 bp | TGGGCCATGAAGACAAGGGAATCCTTCAGAGTGGAGTaGTTCCTAGCACCTTATTTTAAGACAAATAATGCT | + |
|
Preference number: 6 (lower is better) Translates to: WAMKTRESFRVE*FLAPYFKTNNA Trigger: AGCATTATTTGTCTTAAAATAAGGTGCTAGGAATCACTCCACTCTGAAGGATTCCCTTGTCTTCATGGCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431997.2 |
||
| CDS CAA 90 bp | ATATGTGTAATTCAAATGAAGGATAATGCTCCAGACTCAGCCCTTTaGTTAAAAACAGTGAGTAGGATATCAGTGACAACCTGTGAGCTC | + |
|
Preference number: 6 (lower is better) Translates to: ICVIQMKDNAPDSAL*LKTVSRISVTTCEL Trigger: GAGCTCACAGGTTGTCACTGATATCCTACTCACTGTTTTTAACAAAAGGGCTGAGTCTGGAGCATTATCCTTCATTTGAATTACACATAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663404.1 |
||
| CDS CAA 72 bp | ATTCAAATGAAGGATAATGCTCCAGACTCAGCCCTTTaGTTAAAAACAGTGAGTAGGATATCAGTGACAACC | + |
|
Preference number: 6 (lower is better) Translates to: IQMKDNAPDSAL*LKTVSRISVTT Trigger: GGTTGTCACTGATATCCTACTCACTGTTTTTAACAAAAGGGCTGAGTCTGGAGCATTATCCTTCATTTGAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663404.1 |
||
| CDS CCA 72 bp | TTACATGTTCTCTCCTCATGTTGCTTCTTAATTATTTaGCAAAGACAGTTTTTCCAGGCCAGTAGTAAAGAT | + |
|
Preference number: 6 (lower is better) Translates to: LHVLSSCCFLII*QRQFFQASSKD Trigger: ATCTTTACTACTGGCCTGGAAAAACTGTCTTTGCCAAATAATTAAGAAGCAACATGAGGAGAGAACATGTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663404.1 |
||