Pregenerated sensors for LINC01623 (Homo sapiens)
Ensembl gene IDs: ENSG00000225595, ENSG00000227966, ENSG00000229773Ensembl transcript IDs: ENST00000411600.1, ENST00000411921.1, ENST00000423184.1, ENST00000435625.1, ENST00000440244.1, ENST00000601878.1, ENST00000606624.1, ENST00000606727.1, ENST00000608839.1, ENST00000609169.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TTGGCACAACTGACCTCTCCACTCTTCGACAAACTGGCAAGCGCTTaGCGCCGTTCGCCAAACCTTGGTACGACAGTCAATCCAGAAATG | + |
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Preference number: 5 (lower is better) Translates to: LAQLTSPLFDKLASA*RRSPNLGTTVNPEM Trigger: CATTTCTGGATTGACTGTCGTACCAAGGTTTGGCGAACGGCGGCAAGCGCTTGCCAGTTTGTCGAAGAGTGGAGAGGTCAGTTGTGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS CCA 90 bp | TGCAGAAGCAAGGCGATTTATGACTGCATAAACCCTCCGTGCTCCTaGAGAGTTCTTAGACCTCTCCACTCCTTGGCACAACTGACCTCT | + |
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Preference number: 5 (lower is better) Translates to: CRSKAIYDCINPPCS*RVLRPLHSLAQLTS Trigger: AGAGGTCAGTTGTGCCAAGGAGTGGAGAGGTCTAAGAACTCTCCAGGAGCACGGAGGGTTTATGCAGTCATAAATCGCCTTGCTTCTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS CCA 90 bp | ACTCTTCGACAAACTGGCAAGCGCTTGCCGCCGTTCGCCAAACCTTaGTACGACAGTCAATCCAGAAATGAGCTTCTGGAACAAATCCTA | + |
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Preference number: 5 (lower is better) Translates to: TLRQTGKRLPPFAKP*YDSQSRNELLEQIL Trigger: TAGGATTTGTTCCAGAAGCTCATTTCTGGATTGACTGTCGTACCAAGGTTTGGCGAACGGCGGCAAGCGCTTGCCAGTTTGTCGAAGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS GCA 90 bp | AAAGTATGCAGAAGCAAGGCGATTTATGACTGCATAAACCCTCCGTaGTCCTGGAGAGTTCTTAGACCTCTCCACTCCTTGGCACAACTG | + |
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Preference number: 5 (lower is better) Translates to: KVCRSKAIYDCINPP*SWRVLRPLHSLAQL Trigger: CAGTTGTGCCAAGGAGTGGAGAGGTCTAAGAACTCTCCAGGAGCACGGAGGGTTTATGCAGTCATAAATCGCCTTGCTTCTGCATACTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS GCA 90 bp | CTGGGAAATGTAACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTaGTTGTTTTTCGGGTTTTGGAATTCTGCCAGTCTGTGCTTCCGC | + |
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Preference number: 5 (lower is better) Translates to: LGNVTNVIGLVNLVP*LFFGFWNSASLCFR Trigger: GCGGAAGCACAGACTGGCAGAATTCCAAAACCCGAAAAACAAGCAAGGCACCAAATTAACAAGCCCAATCACATTGGTTACATTTCCCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000606624.1 ENST00000606727.1 |
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| CDS GCA 90 bp | TTGTCAAATAGGGCTTTTTACAATGATGAAAATGTTCTATATCTGTaGTGTCCACCTGGTAGGTATGACATGCCACGTGTGGCTATTGAG | + |
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Preference number: 5 (lower is better) Translates to: LSNRAFYNDENVLYL*CPPGRYDMPRVAIE Trigger: CTCAATAGCCACACGTGGCATGTCATACCTACCAGGTGGACAGCACAGATATAGAACATTTTCATCATTGTAAAAAGCCCTATTTGACAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000411600.1 ENST00000411921.1 ENST00000423184.1 ENST00000435625.1 ENST00000440244.1 ENST00000601878.1 ENST00000608839.1 ENST00000609169.1 |
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| CDS TCA 90 bp | TCTTCTTTAAATCAACATTTGAAAACACCATCGCAAAATTACAACTaGGACAGTGAGAGATCTAACCAATTCCATCTTGCTTCTAACCTC | + |
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Preference number: 5 (lower is better) Translates to: SSLNQHLKTPSQNYN*DSERSNQFHLASNL Trigger: GAGGTTAGAAGCAAGATGGAATTGGTTAGATCTCTCACTGTCTCAGTTGTAATTTTGCGATGGTGTTTTCAAATGTTGATTTAAAGAAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000411921.1 |
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| CDS CAA 72 bp | GCCCCGCGCCCGGAGAGTCGGGACCCATCTGGCCCATaGTGCTGTGCCCTGCTGTGCGTTATCACATCAAGG | + |
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Preference number: 6 (lower is better) Translates to: APRPESRDPSGP*CCALLCVITSR Trigger: CCTTGATGTGATAACGCACAGCAGGGCACAGCACAATGGGCCAGATGGGTCCCGACTCTCCGGGCGCGGGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 9 transcripts: ENST00000411600.1 ENST00000411921.1 ENST00000423184.1 ENST00000435625.1 ENST00000440244.1 ENST00000601878.1 ENST00000606727.1 ENST00000608839.1 ENST00000609169.1 |
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| CDS GCA 72 bp | CTGACCTCTCCACTCTTCGACAAACTGGCAAGCGCTTaGCGCCGTTCGCCAAACCTTGGTACGACAGTCAAT | + |
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Preference number: 6 (lower is better) Translates to: LTSPLFDKLASA*RRSPNLGTTVN Trigger: ATTGACTGTCGTACCAAGGTTTGGCGAACGGCGGCAAGCGCTTGCCAGTTTGTCGAAGAGTGGAGAGGTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS CAA 72 bp | ACTGACCTCTCCACTCTTCGACAAACTGGCAAGCGCTaGCCGCCGTTCGCCAAACCTTGGTACGACAGTCAA | + |
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Preference number: 6 (lower is better) Translates to: TDLSTLRQTGKR*PPFAKPWYDSQ Trigger: TTGACTGTCGTACCAAGGTTTGGCGAACGGCGGCAAGCGCTTGCCAGTTTGTCGAAGAGTGGAGAGGTCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS CAA 90 bp | CTTGGCACAACTGACCTCTCCACTCTTCGACAAACTGGCAAGCGCTaGCCGCCGTTCGCCAAACCTTGGTACGACAGTCAATCCAGAAAT | + |
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Preference number: 6 (lower is better) Translates to: LGTTDLSTLRQTGKR*PPFAKPWYDSQSRN Trigger: ATTTCTGGATTGACTGTCGTACCAAGGTTTGGCGAACGGCGGCAAGCGCTTGCCAGTTTGTCGAAGAGTGGAGAGGTCAGTTGTGCCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS CAA 90 bp | ATAAACCCTCCGTGCTCCTGGAGAGTTCTTAGACCTCTCCACTCCTaGGCACAACTGACCTCTCCACTCTTCGACAAACTGGCAAGCGCT | + |
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Preference number: 6 (lower is better) Translates to: INPPCSWRVLRPLHS*AQLTSPLFDKLASA Trigger: AGCGCTTGCCAGTTTGTCGAAGAGTGGAGAGGTCAGTTGTGCCAAGGAGTGGAGAGGTCTAAGAACTCTCCAGGAGCACGGAGGGTTTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS CCA 72 bp | CCCACACAGCCGGCTTTGCATGCCCGTCTTGATAAATaGTTCTGTCTAGGCAGTGGGCAAGCTGAACTCATT | + |
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Preference number: 6 (lower is better) Translates to: PTQPALHARLDK*FCLGSGQAELI Trigger: AATGAGTTCAGCTTGCCCACTGCCTAGACAGAACCATTTATCAAGACGGGCATGCAAAGCCGGCTGTGTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000411600.1 ENST00000411921.1 ENST00000423184.1 ENST00000435625.1 ENST00000440244.1 ENST00000601878.1 ENST00000606727.1 ENST00000608839.1 ENST00000609169.1 |
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| CDS CCA 72 bp | CAAACTGGCAAGCGCTTGCCGCCGTTCGCCAAACCTTaGTACGACAGTCAATCCAGAAATGAGCTTCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: QTGKRLPPFAKP*YDSQSRNELLE Trigger: TTCCAGAAGCTCATTTCTGGATTGACTGTCGTACCAAGGTTTGGCGAACGGCGGCAAGCGCTTGCCAGTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS CCA 72 bp | AAGGCGATTTATGACTGCATAAACCCTCCGTGCTCCTaGAGAGTTCTTAGACCTCTCCACTCCTTGGCACAA | + |
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Preference number: 6 (lower is better) Translates to: KAIYDCINPPCS*RVLRPLHSLAQ Trigger: TTGTGCCAAGGAGTGGAGAGGTCTAAGAACTCTCCAGGAGCACGGAGGGTTTATGCAGTCATAAATCGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS CCA 72 bp | ATAGCAGCCCTTTCCAAAACAAACCCGCTTCCTGCCTaGGGACTAGACTGCTTTCGCAGGACTAACAAATTA | + |
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Preference number: 6 (lower is better) Translates to: IAALSKTNPLPA*GLDCFRRTNKL Trigger: TAATTTGTTAGTCCTGCGAAAGCAGTCTAGTCCCCAGGCAGGAAGCGGGTTTGTTTTGGAAAGGGCTGCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000411600.1 ENST00000411921.1 ENST00000423184.1 ENST00000435625.1 ENST00000440244.1 ENST00000601878.1 ENST00000608839.1 ENST00000609169.1 |
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| CDS CAA 90 bp | GGAAATGTAACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGCTaGTTTTTCGGGTTTTGGAATTCTGCCAGTCTGTGCTTCCGCGGC | + |
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Preference number: 6 (lower is better) Translates to: GNVTNVIGLVNLVPC*FFGFWNSASLCFRG Trigger: GCCGCGGAAGCACAGACTGGCAGAATTCCAAAACCCGAAAAACAAGCAAGGCACCAAATTAACAAGCCCAATCACATTGGTTACATTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000606624.1 ENST00000606727.1 |
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| CDS GCA 72 bp | TCCAAAACAAACCCGCTTCCTGCCTGGGGACTAGACTaGTTTCGCAGGACTAACAAATTAGCCACAAGATTA | + |
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Preference number: 6 (lower is better) Translates to: SKTNPLPAWGLD*FRRTNKLATRL Trigger: TAATCTTGTGGCTAATTTGTTAGTCCTGCGAAAGCAGTCTAGTCCCCAGGCAGGAAGCGGGTTTGTTTTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENST00000411600.1 ENST00000411921.1 ENST00000423184.1 ENST00000435625.1 ENST00000440244.1 ENST00000601878.1 ENST00000608839.1 ENST00000609169.1 |
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| CDS TCA 72 bp | CACGGAATAAAAAGTATGCAGAAGCAAGGCGATTTATaGCTGCATAAACCCTCCGTGCTCCTGGAGAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: HGIKSMQKQGDL*LHKPSVLLESS Trigger: AGAACTCTCCAGGAGCACGGAGGGTTTATGCAGTCATAAATCGCCTTGCTTCTGCATACTTTTTATTCCGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000606624.1 |
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| CDS GCA 72 bp | TATAAATTATGGTTTAGGAGTCATGCAGCTGGAGGCTaGAAGATTCTAAACCTCCCCCAATTGCTCCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: YKLWFRSHAAGG*KILNLPQLLLR Trigger: CCTGAGGAGCAATTGGGGGAGGTTTAGAATCTTGCAGCCTCCAGCTGCATGACTCCTAAACCATAATTTATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 8 transcripts: ENST00000411600.1 ENST00000411921.1 ENST00000423184.1 ENST00000435625.1 ENST00000440244.1 ENST00000601878.1 ENST00000608839.1 ENST00000609169.1 |
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| CDS TCA 72 bp | CCTCCAAGCTGTCCTTGTTCATTCCTGGTCGTAGGCTaGCCTAACTTTGGGAGGAACTTAGTTTATAGTTTA | + |
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Preference number: 6 (lower is better) Translates to: PPSCPCSFLVVG*PNFGRNLVYSL Trigger: TAAACTATAAACTAAGTTCCTCCCAAAGTTAGGTCAGCCTACGACCAGGAATGAACAAGGACAGCTTGGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000411600.1 ENST00000411921.1 ENST00000423184.1 ENST00000435625.1 ENST00000440244.1 ENST00000601878.1 ENST00000608839.1 ENST00000609169.1 |
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| CDS CAA 72 bp | ACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGCTaGTTTTTCGGGTTTTGGAATTCTGCCAGTCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: TNVIGLVNLVPC*FFGFWNSASLC Trigger: GCACAGACTGGCAGAATTCCAAAACCCGAAAAACAAGCAAGGCACCAAATTAACAAGCCCAATCACATTGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000606624.1 ENST00000606727.1 |
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| CDS CCA 72 bp | TTCTGTCTAGGCAGTGGGCAAGCTGAACTCATTGGGTaGTTACACATTTTCAAATTTTCAGAGCTTTCCTTA | + |
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Preference number: 6 (lower is better) Translates to: FCLGSGQAELIG*LHIFKFSELSL Trigger: TAAGGAAAGCTCTGAAAATTTGAAAATGTGTAACCACCCAATGAGTTCAGCTTGCCCACTGCCTAGACAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 9 transcripts: ENST00000411600.1 ENST00000411921.1 ENST00000423184.1 ENST00000435625.1 ENST00000440244.1 ENST00000601878.1 ENST00000606727.1 ENST00000608839.1 ENST00000609169.1 |
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| CDS CAA 90 bp | TCGATAATACTGGGAAATGTAACCAATGTGATTGGGCTTGTTAATTaGGTGCCTTGCTTGTTTTTCGGGTTTTGGAATTCTGCCAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: SIILGNVTNVIGLVN*VPCLFFGFWNSASL Trigger: CAGACTGGCAGAATTCCAAAACCCGAAAAACAAGCAAGGCACCAAATTAACAAGCCCAATCACATTGGTTACATTTCCCAGTATTATCGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000606624.1 ENST00000606727.1 |
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| CDS CAA 72 bp | CTGGGAAATGTAACCAATGTGATTGGGCTTGTTAATTaGGTGCCTTGCTTGTTTTTCGGGTTTTGGAATTCT | + |
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Preference number: 6 (lower is better) Translates to: LGNVTNVIGLVN*VPCLFFGFWNS Trigger: AGAATTCCAAAACCCGAAAAACAAGCAAGGCACCAAATTAACAAGCCCAATCACATTGGTTACATTTCCCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000606624.1 ENST00000606727.1 |
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| CDS TCA 72 bp | AATCAACATTTGAAAACACCATCGCAAAATTACAACTaGGACAGTGAGAGATCTAACCAATTCCATCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: NQHLKTPSQNYN*DSERSNQFHLA Trigger: AGCAAGATGGAATTGGTTAGATCTCTCACTGTCTCAGTTGTAATTTTGCGATGGTGTTTTCAAATGTTGATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000411921.1 |
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| CDS TCA 72 bp | AATCAACATTTGAAAACACCATCGCAAAATTACAACTaGGACAGTGAGAGATCTAACCTAACCAATTCCATC | + |
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Preference number: 6 (lower is better) Translates to: NQHLKTPSQNYN*DSERSNLTNSI Trigger: GATGGAATTGGTTAGGTTAGATCTCTCACTGTCTCAGTTGTAATTTTGCGATGGTGTTTTCAAATGTTGATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENST00000411600.1 ENST00000423184.1 ENST00000435625.1 ENST00000440244.1 ENST00000601878.1 ENST00000608839.1 ENST00000609169.1 |
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