Pregenerated sensors for LINC01621 (Homo sapiens)

Ensembl gene IDs: ENSG00000235357

Ensembl transcript IDs: ENST00000669965.1

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AACCCTAAAGGGGAAAGAGAAGGAAGCTTGTTACTGGAGCTCAGCTaGGAGCTGGAGAAACGGAGGGGCTGCCTGTCAGAACTGTCATGG	+
Preference number: 5 (lower is better) Translates to: NPKGEREGSLLLELS*ELEKRRGCLSELSW Trigger: CCATGACAGTTCTGACAGGCAGCCCCTCCGTTTCTCCAGCTCTCAGCTGAGCTCCAGTAACAAGCTTCCTTCTCTTTCCCCTTTAGGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS CCA 90 bp	ACAGGAGGAGGGAGGCCTTTCCACAGAATAAGACAATGCCATACATaGCCCAACTTGATCTGGTGTTTTCTCTATGTTATTAGGGTTTTC	+
Preference number: 5 (lower is better) Translates to: TGGGRPFHRIRQCHT*PNLIWCFLYVIRVF Trigger: GAAAACCCTAATAACATAGAGAAAACACCAGATCAAGTTGGGCCATGTATGGCATTGTCTTATTCTGTGGAAAGGCCTCCCTCCTCCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS GCA 90 bp	CTAAATAAACTGAGGACCTGTGAAATGAAGGAATGTGTCCAAGCTTaGTCCATTAGCCAGGATTCCTCGGGAAACAAATGGAAGCATCAA	+
Preference number: 5 (lower is better) Translates to: LNKLRTCEMKECVQA*SISQDSSGNKWKHQ Trigger: TTGATGCTTCCATTTGTTTCCCGAGGAATCCTGGCTAATGGAGCAAGCTTGGACACATTCCTTCATTTCACAGGTCCTCAGTTTATTTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS TCA 90 bp	ACCAAGAACCCACTGGAAGGAATACATTCAGGACATACAGGTACTTaGAAGGAACTATTCTTCATGCTGGGCACCAAATCTTCTAGTTTA	+
Preference number: 5 (lower is better) Translates to: TKNPLEGIHSGHTGT*KELFFMLGTKSSSL Trigger: TAAACTAGAAGATTTGGTGCCCAGCATGAAGAATAGTTCCTTTCAAGTACCTGTATGTCCTGAATGTATTCCTTCCAGTGGGTTCTTGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS CCA 90 bp	GAATACAAAATGGAATATGGTGAGACTGATGTGCAGAATCCACTTTaGGAAAGGCTGCTCAGGCCCTTCATTTTACAGCTAAATAAACTG	+
Preference number: 5 (lower is better) Translates to: EYKMEYGETDVQNPL*ERLLRPFILQLNKL Trigger: CAGTTTATTTAGCTGTAAAATGAAGGGCCTGAGCAGCCTTTCCCAAAGTGGATTCTGCACATCAGTCTCACCATATTCCATTTTGTATTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS TCA 72 bp	GGGGAAAGAGAAGGAAGCTTGTTACTGGAGCTCAGCTaGGAGCTGGAGAAACGGAGGGGCTGCCTGTCAGAA	+
Preference number: 6 (lower is better) Translates to: GEREGSLLLELS*ELEKRRGCLSE Trigger: TTCTGACAGGCAGCCCCTCCGTTTCTCCAGCTCTCAGCTGAGCTCCAGTAACAAGCTTCCTTCTCTTTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS CCA 72 bp	CTGGAGAAACGGAGGGGCTGCCTGTCAGAACTGTCATaGGGTAGGGAAGAGGGGGATAAATACATGACCTCA	+
Preference number: 6 (lower is better) Translates to: LEKRRGCLSELS*GREEGDKYMTS Trigger: TGAGGTCATGTATTTATCCCCCTCTTCCCTACCCCATGACAGTTCTGACAGGCAGCCCCTCCGTTTCTCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS CCA 72 bp	GAGAAGGAAGCTTGTTACTGGAGCTCAGCTGAGAGCTaGAGAAACGGAGGGGCTGCCTGTCAGAACTGTCAT	+
Preference number: 6 (lower is better) Translates to: EKEACYWSSAES*RNGGAACQNCH Trigger: ATGACAGTTCTGACAGGCAGCCCCTCCGTTTCTCCAGCTCTCAGCTGAGCTCCAGTAACAAGCTTCCTTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS GCA 72 bp	CTGAGGACCTGTGAAATGAAGGAATGTGTCCAAGCTTaGTCCATTAGCCAGGATTCCTCGGGAAACAAATGG	+
Preference number: 6 (lower is better) Translates to: LRTCEMKECVQA*SISQDSSGNKW Trigger: CCATTTGTTTCCCGAGGAATCCTGGCTAATGGAGCAAGCTTGGACACATTCCTTCATTTCACAGGTCCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS CAA 72 bp	AAACAGGTGTATCTACTTCAGGACCTCTCAGAGTTGTaGACACGGTGCCACAAATTGTGGCTCTCCAAAAGG	+
Preference number: 6 (lower is better) Translates to: KQVYLLQDLSEL*TRCHKLWLSKR Trigger: CCTTTTGGAGAGCCACAATTTGTGGCACCGTGTCAACAACTCTGAGAGGTCCTGAAGTAGATACACCTGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS CCA 72 bp	ATGGAATATGGTGAGACTGATGTGCAGAATCCACTTTaGGAAAGGCTGCTCAGGCCCTTCATTTTACAGCTA	+
Preference number: 6 (lower is better) Translates to: MEYGETDVQNPL*ERLLRPFILQL Trigger: TAGCTGTAAAATGAAGGGCCTGAGCAGCCTTTCCCAAAGTGGATTCTGCACATCAGTCTCACCATATTCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS CAA 72 bp	GTAAAACAGGTGTATCTACTTCAGGACCTCTCAGAGTaGTTGACACGGTGCCACAAATTGTGGCTCTCCAAA	+
Preference number: 6 (lower is better) Translates to: VKQVYLLQDLSE*LTRCHKLWLSK Trigger: TTTGGAGAGCCACAATTTGTGGCACCGTGTCAACAACTCTGAGAGGTCCTGAAGTAGATACACCTGTTTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS CCA 72 bp	GGGAGGCCTTTCCACAGAATAAGACAATGCCATACATaGCCCAACTTGATCTGGTGTTTTCTCTATGTTATT	+
Preference number: 6 (lower is better) Translates to: GRPFHRIRQCHT*PNLIWCFLYVI Trigger: AATAACATAGAGAAAACACCAGATCAAGTTGGGCCATGTATGGCATTGTCTTATTCTGTGGAAAGGCCTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS CAA 72 bp	TTCCACAGAATAAGACAATGCCATACATGGCCCAACTaGATCTGGTGTTTTCTCTATGTTATTAGGGTTTTC	+
Preference number: 6 (lower is better) Translates to: FHRIRQCHTWPN*IWCFLYVIRVF Trigger: GAAAACCCTAATAACATAGAGAAAACACCAGATCAAGTTGGGCCATGTATGGCATTGTCTTATTCTGTGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669965.1
CDS GCA 72 bp	CAGGACATACAGGTACTTGAAAGGAACTATTCTTCATaGTGGGCACCAAATCTTCTAGTTTATATGTCAAAT	+
Preference number: 6 (lower is better) Translates to: QDIQVLERNYSS*WAPNLLVYMSN Trigger: ATTTGACATATAAACTAGAAGATTTGGTGCCCAGCATGAAGAATAGTTCCTTTCAAGTACCTGTATGTCCTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669965.1