Pregenerated sensors for LINC01620 (Homo sapiens)
Ensembl gene IDs: ENSG00000168746Ensembl transcript IDs: ENST00000306731.4, ENST00000372910.5, ENST00000415299.2, ENST00000623295.1, ENST00000637248.1
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CACACACAGCTGGTCACCAATCCATACCTGGTGTGGCCGCTGATCTaGTGCTCATTGTCTGACTCCAGGGGCCAATATGAGGCCTCGAGG | + |
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Preference number: 5 (lower is better) Translates to: HTQLVTNPYLVWPLI*CSLSDSRGQYEASR Trigger: CCTCGAGGCCTCATATTGGCCCCTGGAGTCAGACAATGAGCATCAGATCAGCGGCCACACCAGGTATGGATTGGTGACCAGCTGTGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637248.1 |
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| CDS TCA 90 bp | CGTGGTGGGCACAGAAGTAGTGTGAATGGTGGAAAGCTCATCTCATaGCAAATGTTGATGGGCAGAGCCCTGTGCCGGGAACCCCGTTGC | + |
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Preference number: 5 (lower is better) Translates to: RGGHRSSVNGGKLIS*QMLMGRALCREPRC Trigger: GCAACGGGGTTCCCGGCACAGGGCTCTGCCCATCAACATTTGTCATGAGATGAGCTTTCCACCATTCACACTACTTCTGTGCCCACCACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637248.1 |
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| CDS TCA 90 bp | AGGTCCACACACAGCTGGTCACCAATCCATACCTGGTGTGGCCGCTaGTCTGATGCTCATTGTCTGACTCCAGGGGCCAATATGAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: RSTHSWSPIHTWCGR*SDAHCLTPGANMRP Trigger: AGGCCTCATATTGGCCCCTGGAGTCAGACAATGAGCATCAGATCAGCGGCCACACCAGGTATGGATTGGTGACCAGCTGTGTGTGGACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637248.1 |
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| CDS CCA 90 bp | AAGGAACGCAGTCAAGGTCAGACAGCTGGTGTTCAATGGCAGAGGTaGGATTCAAACCCAGGTCCCTCTGATTCAGGCGCTGGGCTCTCA | + |
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Preference number: 5 (lower is better) Translates to: KERSQGQTAGVQWQR*DSNPGPSDSGAGLS Trigger: TGAGAGCCCAGCGCCTGAATCAGAGGGACCTGGGTTTGAATCCCACCTCTGCCATTGAACACCAGCTGTCTGACCTTGACTGCGTTCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623295.1 |
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| CDS GCA 90 bp | TTGCAAAGCAGCCGTGGGAGTGGGAGACGGTGTGTACTCAGCATCTaGACAGAAATGTGGTCCATCATGGCAGGCGTGTTTGTCTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: LQSSRGSGRRCVLSI*TEMWSIMAGVFVWK Trigger: CTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGTGCAGATGCTGAGTACACACCGTCTCCCACTCCCACGGCTGCTTTGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000372910.5 ENST00000415299.2 |
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| CDS CCA 90 bp | CGTGGGAGTGGGAGACGGTGTGTACTCAGCATCTGCACAGAAATGTaGTCCATCATGGCAGGCGTGTTTGTCTGGAAGTGCTCAACACAC | + |
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Preference number: 5 (lower is better) Translates to: RGSGRRCVLSICTEM*SIMAGVFVWKCSTH Trigger: GTGTGTTGAGCACTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGTGCAGATGCTGAGTACACACCGTCTCCCACTCCCACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000372910.5 ENST00000415299.2 |
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| CDS GCA 90 bp | CAACAACAAAGAGGAAACAGGCTCAGGAGGAGAGAGGAAGGGACTTaGCCAAGGTCCACACACAGCTGGTCACCAATCCATACCTGGTGT | + |
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Preference number: 5 (lower is better) Translates to: QQQRGNRLRRREEGT*PRSTHSWSPIHTWC Trigger: ACACCAGGTATGGATTGGTGACCAGCTGTGTGTGGACCTTGGGCAAGTCCCTTCCTCTCTCCTCCTGAGCCTGTTTCCTCTTTGTTGTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000637248.1 |
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| CDS CCA 90 bp | GGAGACGGTGTGTACTCAGCATCTGCACAGAAATGTGGTCCATCATaGCAGGCGTGTTTGTCTGGAAGTGCTCAACACACAGGCACCGTT | + |
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Preference number: 5 (lower is better) Translates to: GDGVYSASAQKCGPS*QACLSGSAQHTGTV Trigger: AACGGTGCCTGTGTGTTGAGCACTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGTGCAGATGCTGAGTACACACCGTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415299.2 |
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| CDS CCA 90 bp | GGAGACGGTGTGTACTCAGCATCTGCACAGAAATGTGGTCCATCATaGCAGGCGTGTTTGTCTGGAAGTGCTCAACACACAGGCAAGTGT | + |
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Preference number: 5 (lower is better) Translates to: GDGVYSASAQKCGPS*QACLSGSAQHTGKC Trigger: ACACTTGCCTGTGTGTTGAGCACTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGTGCAGATGCTGAGTACACACCGTCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372910.5 |
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| CDS CCA 90 bp | AGCATCTGCACAGAAATGTGGTCCATCATGGCAGGCGTGTTTGTCTaGAAGTGCTCAACACACAGGCACCGTTGCTTGGAGAAAGAGATG | + |
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Preference number: 5 (lower is better) Translates to: SICTEMWSIMAGVFV*KCSTHRHRCLEKEM Trigger: CATCTCTTTCTCCAAGCAACGGTGCCTGTGTGTTGAGCACTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGTGCAGATGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415299.2 |
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| CDS CCA 90 bp | AAAGTGAGGATCATTAACACTGTCCTTGCAAAGCAGCCGTGGGAGTaGGAGACGGTGTGTACTCAGCATCTGCACAGAAATGTGGTCCAT | + |
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Preference number: 5 (lower is better) Translates to: KVRIINTVLAKQPWE*ETVCTQHLHRNVVH Trigger: ATGGACCACATTTCTGTGCAGATGCTGAGTACACACCGTCTCCCACTCCCACGGCTGCTTTGCAAGGACAGTGTTAATGATCCTCACTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000372910.5 ENST00000415299.2 |
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| CDS CCA 90 bp | TTTATAGCTTACCAGTTCCTGGGCATACGTCCAGTGAGACATACGTaGGTTCAAATCTTCATTGTGCCACTCTCTGTACGAGTCAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: FIAYQFLGIRPVRHT*VQIFIVPLSVRVSC Trigger: ACAGCTGACTCGTACAGAGAGTGGCACAATGAAGATTTGAACCCACGTATGTCTCACTGGACGTATGCCCAGGAACTGGTAAGCTATAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623295.1 |
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| CDS TCA 90 bp | ATTCTGTGTTCAACACTCCATCATTCTTCAACACAAAATGTTCAATaGTATCACCATATGTGTAGGATGCCCAACCTTACCGCCCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: ILCSTLHHSSTQNVQ*YHHMCRMPNLTALH Trigger: ATGGAGGGCGGTAAGGTTGGGCATCCTACACATATGGTGATATCATTGAACATTTTGTGTTGAAGAATGATGGAGTGTTGAACACAGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000415299.2 |
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| CDS CAA 72 bp | GTGGGCCTGAAGCTGCCAGTGCTTAGTGGATCAGGGTaGGGCTTAGGGTGTGAGGCCAGAGAGCTCAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: VGLKLPVLSGSG*GLGCEARELSS Trigger: TGAACTGAGCTCTCTGGCCTCACACCCTAAGCCCAACCCTGATCCACTAAGCACTGGCAGCTTCAGGCCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000415299.2 ENST00000637248.1 |
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| CDS GCA 72 bp | AGCCGTGGGAGTGGGAGACGGTGTGTACTCAGCATCTaGACAGAAATGTGGTCCATCATGGCAGGCGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: SRGSGRRCVLSI*TEMWSIMAGVF Trigger: AAACACGCCTGCCATGATGGACCACATTTCTGTGCAGATGCTGAGTACACACCGTCTCCCACTCCCACGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000372910.5 ENST00000415299.2 |
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| CDS TCA 72 bp | CTGGTCACCAATCCATACCTGGTGTGGCCGCTGATCTaGTGCTCATTGTCTGACTCCAGGGGCCAATATGAG | + |
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Preference number: 6 (lower is better) Translates to: LVTNPYLVWPLI*CSLSDSRGQYE Trigger: CTCATATTGGCCCCTGGAGTCAGACAATGAGCATCAGATCAGCGGCCACACCAGGTATGGATTGGTGACCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637248.1 |
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| CDS GCA 72 bp | CTAGGGAAGAGCTCTGCCGCTAATATTGGACTGGTTTaGACCCCTGGGCCTCACTTTCCCAATCAGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: LGKSSAANIGLV*TPGPHFPNQFL Trigger: CAGGAACTGATTGGGAAAGTGAGGCCCAGGGGTGCAAACCAGTCCAATATTAGCGGCAGAGCTCTTCCCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000306731.4 ENST00000372910.5 |
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| CDS CCA 72 bp | ATCTTCATTGTGCCACTCTCTGTACGAGTCAGCTGTTaGCTGCCAGCCACCCTGTGGGTGAGGGGAATAAAC | + |
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Preference number: 6 (lower is better) Translates to: IFIVPLSVRVSC*LPATLWVRGIN Trigger: GTTTATTCCCCTCACCCACAGGGTGGCTGGCAGCCAACAGCTGACTCGTACAGAGAGTGGCACAATGAAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000306731.4 ENST00000372910.5 ENST00000623295.1 |
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| CDS CCA 72 bp | GGGAGACGGTGTGTACTCAGCATCTGCACAGAAATGTaGTCCATCATGGCAGGCGTGTTTGTCTGGAAGTGC | + |
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Preference number: 6 (lower is better) Translates to: GRRCVLSICTEM*SIMAGVFVWKC Trigger: GCACTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGTGCAGATGCTGAGTACACACCGTCTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000372910.5 ENST00000415299.2 |
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| CDS CAA 90 bp | ACAACAACAAAGAGGAAACAGGCTCAGGAGGAGAGAGGAAGGGACTaGCCCAAGGTCCACACACAGCTGGTCACCAATCCATACCTGGTG | + |
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Preference number: 6 (lower is better) Translates to: TTTKRKQAQEERGRD*PKVHTQLVTNPYLV Trigger: CACCAGGTATGGATTGGTGACCAGCTGTGTGTGGACCTTGGGCAAGTCCCTTCCTCTCTCCTCCTGAGCCTGTTTCCTCTTTGTTGTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000637248.1 |
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| CDS GCA 72 bp | ATGTGGTCCATCATGGCAGGCGTGTTTGTCTGGAAGTaGTCAACACACAGGCACCGTTGCTTGGAGAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: MWSIMAGVFVWK*STHRHRCLEKE Trigger: CTCTTTCTCCAAGCAACGGTGCCTGTGTGTTGAGCACTTCCAGACAAACACGCCTGCCATGATGGACCACAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415299.2 |
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| CDS CCA 72 bp | ACAGAAATGTGGTCCATCATGGCAGGCGTGTTTGTCTaGAAGTGCTCAACACACAGGCACCGTTGCTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: TEMWSIMAGVFV*KCSTHRHRCLE Trigger: CTCCAAGCAACGGTGCCTGTGTGTTGAGCACTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415299.2 |
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| CDS CCA 72 bp | CAGAGAAGCAAAGGAACGCAGTCAAGGTCAGACAGCTaGTGTTCAATGGCAGAGGTGGGATTCAAACCCAGG | + |
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Preference number: 6 (lower is better) Translates to: QRSKGTQSRSDS*CSMAEVGFKPR Trigger: CCTGGGTTTGAATCCCACCTCTGCCATTGAACACCAGCTGTCTGACCTTGACTGCGTTCCTTTGCTTCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623295.1 |
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| CDS CAA 72 bp | AATCTTCATTGTGCCACTCTCTGTACGAGTCAGCTGTaGGCTGCCAGCCACCCTGTGGGTGAGGGGAATAAA | + |
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Preference number: 6 (lower is better) Translates to: NLHCATLCTSQL*AASHPVGEGNK Trigger: TTTATTCCCCTCACCCACAGGGTGGCTGGCAGCCAACAGCTGACTCGTACAGAGAGTGGCACAATGAAGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000306731.4 ENST00000372910.5 ENST00000623295.1 |
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| CDS CAA 72 bp | TCTGCACAGAAATGTGGTCCATCATGGCAGGCGTGTTaGTCTGGAAGTGCTCAACACACAGGCACCGTTGCT | + |
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Preference number: 6 (lower is better) Translates to: SAQKCGPSWQAC*SGSAQHTGTVA Trigger: AGCAACGGTGCCTGTGTGTTGAGCACTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGTGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415299.2 |
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| CDS CAA 90 bp | TACTCAGCATCTGCACAGAAATGTGGTCCATCATGGCAGGCGTGTTaGTCTGGAAGTGCTCAACACACAGGCACCGTTGCTTGGAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: YSASAQKCGPSWQAC*SGSAQHTGTVAWRK Trigger: CTTTCTCCAAGCAACGGTGCCTGTGTGTTGAGCACTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGTGCAGATGCTGAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415299.2 |
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| CDS CAA 90 bp | TACTCAGCATCTGCACAGAAATGTGGTCCATCATGGCAGGCGTGTTaGTCTGGAAGTGCTCAACACACAGGCAAGTGTTACCTAGGGCAT | + |
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Preference number: 6 (lower is better) Translates to: YSASAQKCGPSWQAC*SGSAQHTGKCYLGH Trigger: ATGCCCTAGGTAACACTTGCCTGTGTGTTGAGCACTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGTGCAGATGCTGAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372910.5 |
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| CDS CCA 72 bp | ATCATTAACACTGTCCTTGCAAAGCAGCCGTGGGAGTaGGAGACGGTGTGTACTCAGCATCTGCACAGAAAT | + |
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Preference number: 6 (lower is better) Translates to: IINTVLAKQPWE*ETVCTQHLHRN Trigger: ATTTCTGTGCAGATGCTGAGTACACACCGTCTCCCACTCCCACGGCTGCTTTGCAAGGACAGTGTTAATGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000372910.5 ENST00000415299.2 |
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| CDS CAA 72 bp | TCTGCACAGAAATGTGGTCCATCATGGCAGGCGTGTTaGTCTGGAAGTGCTCAACACACAGGCAAGTGTTAC | + |
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Preference number: 6 (lower is better) Translates to: SAQKCGPSWQAC*SGSAQHTGKCY Trigger: GTAACACTTGCCTGTGTGTTGAGCACTTCCAGACAAACACGCCTGCCATGATGGACCACATTTCTGTGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372910.5 |
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| CDS TCA 72 bp | CTCACTTTCCCAATCAGTTCCTGGGCATACGTCCAGTaGGACATACGTGGGTTCAAATCTTCATTGTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: LTFPISSWAYVQ*DIRGFKSSLCH Trigger: GTGGCACAATGAAGATTTGAACCCACGTATGTCTCACTGGACGTATGCCCAGGAACTGATTGGGAAAGTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000306731.4 ENST00000372910.5 |
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| CDS CCA 72 bp | TACCAGTTCCTGGGCATACGTCCAGTGAGACATACGTaGGTTCAAATCTTCATTGTGCCACTCTCTGTACGA | + |
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Preference number: 6 (lower is better) Translates to: YQFLGIRPVRHT*VQIFIVPLSVR Trigger: TCGTACAGAGAGTGGCACAATGAAGATTTGAACCCACGTATGTCTCACTGGACGTATGCCCAGGAACTGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623295.1 |
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| CDS CCA 72 bp | AATCAGTTCCTGGGCATACGTCCAGTGAGACATACGTaGGTTCAAATCTTCATTGTGCCACTCTCTGTACGA | + |
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Preference number: 6 (lower is better) Translates to: NQFLGIRPVRHT*VQIFIVPLSVR Trigger: TCGTACAGAGAGTGGCACAATGAAGATTTGAACCCACGTATGTCTCACTGGACGTATGCCCAGGAACTGATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000306731.4 ENST00000372910.5 |
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| CDS TCA 72 bp | TTATTACACACCAGGCCCTCCACTCATTGTTTAAGGTaGACTCTCTCGCATTTGATCCTTGAGGCAATCCCA | + |
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Preference number: 6 (lower is better) Translates to: LLHTRPSTHCLR*TLSHLILEAIP Trigger: TGGGATTGCCTCAAGGATCAAATGCGAGAGAGTTCACCTTAAACAATGAGTGGAGGGCCTGGTGTGTAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623295.1 |
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| CDS CCA 72 bp | GAAGTGACAGTAAGGCTTCCTGGAGGTGACACCGTTTaGACTAATTCTATGTCTCCAGACAATAAAGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: EVTVRLPGGDTV*TNSMSPDNKGG Trigger: ACCTCCTTTATTGTCTGGAGACATAGAATTAGTCCAAACGGTGTCACCTCCAGGAAGCCTTACTGTCACTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000623295.1 |
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