Pregenerated sensors for LINC01614 (Homo sapiens)
Ensembl gene IDs: ENSG00000230838Ensembl transcript IDs: ENST00000415479.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCTTTAGAACTTGGCTCTGATCTCTTCGGTATTTGCCTGATGTCTTaGGACTCCATTCTTCTGAGCTCCTGGTGTCTTAGATTCTCCGTG | + |
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Preference number: 5 (lower is better) Translates to: PLELGSDLFGICLMS*DSILLSSWCLRFSV Trigger: CACGGAGAATCTAAGACACCAGGAGCTCAGAAGAATGGAGTCTCAAGACATCAGGCAAATACCGAAGAGATCAGAGCCAAGTTCTAAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415479.1 |
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| CDS TCA 90 bp | TCTTGGTTGACATTTGGGAAATGGCTGCCCTTTAGAACTTGGCTCTaGTCTCTTCGGTATTTGCCTGATGTCTTGAGACTCCATTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: SWLTFGKWLPFRTWL*SLRYLPDVLRLHSS Trigger: AGAAGAATGGAGTCTCAAGACATCAGGCAAATACCGAAGAGATCAGAGCCAAGTTCTAAAGGGCAGCCATTTCCCAAATGTCAACCAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415479.1 |
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| CDS CCA 72 bp | TTAGATTCTCCGTGTCTGAAGTCCCCTTTCGGATCCTaGGAGGAAGGAACATTGAAGTCTCCAAAGAGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: LDSPCLKSPFGS*EEGTLKSPKSC Trigger: GCAGCTCTTTGGAGACTTCAATGTTCCTTCCTCCCAGGATCCGAAAGGGGACTTCAGACACGGAGAATCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000415479.1 |
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| CDS TCA 72 bp | CTTGGCTCTGATCTCTTCGGTATTTGCCTGATGTCTTaGGACTCCATTCTTCTGAGCTCCTGGTGTCTTAGA | + |
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Preference number: 6 (lower is better) Translates to: LGSDLFGICLMS*DSILLSSWCLR Trigger: TCTAAGACACCAGGAGCTCAGAAGAATGGAGTCTCAAGACATCAGGCAAATACCGAAGAGATCAGAGCCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415479.1 |
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| CDS TCA 72 bp | ACATTTGGGAAATGGCTGCCCTTTAGAACTTGGCTCTaGTCTCTTCGGTATTTGCCTGATGTCTTGAGACTC | + |
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Preference number: 6 (lower is better) Translates to: TFGKWLPFRTWL*SLRYLPDVLRL Trigger: GAGTCTCAAGACATCAGGCAAATACCGAAGAGATCAGAGCCAAGTTCTAAAGGGCAGCCATTTCCCAAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415479.1 |
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| CDS TCA 72 bp | CCAGGAAATCATAATTCTCTTGGCTTCGCTCTTGGTTaGCATTTGGGAAATGGCTGCCCTTTAGAACTTGGC | + |
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Preference number: 6 (lower is better) Translates to: PGNHNSLGFALG*HLGNGCPLELG Trigger: GCCAAGTTCTAAAGGGCAGCCATTTCCCAAATGTCAACCAAGAGCGAAGCCAAGAGAATTATGATTTCCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000415479.1 |
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| CDS TCA 72 bp | ATGTCTACTGCATTTCCTGATGGCAGAGAACAAAAGTaGGACGTGAAAGAGAAAACATACACGCAGTGGAAT | + |
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Preference number: 6 (lower is better) Translates to: MSTAFPDGREQK*DVKEKTYTQWN Trigger: ATTCCACTGCGTGTATGTTTTCTCTTTCACGTCTCACTTTTGTTCTCTGCCATCAGGAAATGCAGTAGACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000415479.1 |
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| CDS CAA 72 bp | CAGACCCTAGCACTTGAGTACCTTACACTTTTTAACTaGCACTCCAGCTTTGATCAAGCTTTTCCTGTCATT | + |
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Preference number: 6 (lower is better) Translates to: QTLALEYLTLFN*HSSFDQAFPVI Trigger: AATGACAGGAAAAGCTTGATCAAAGCTGGAGTGCAAGTTAAAAAGTGTAAGGTACTCAAGTGCTAGGGTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000415479.1 |
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| CDS CAA 72 bp | TTGAGTACCTTACACTTTTTAACTTGCACTCCAGCTTaGATCAAGCTTTTCCTGTCATTGTATAGCCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: LSTLHFLTCTPA*IKLFLSLYSQE Trigger: TTCCTGGCTATACAATGACAGGAAAAGCTTGATCAAAGCTGGAGTGCAAGTTAAAAAGTGTAAGGTACTCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000415479.1 |
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