Pregenerated sensors for LINC01613 (Homo sapiens)
Ensembl gene IDs: ENSG00000261432Ensembl transcript IDs: ENST00000561476.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTCCTGTGTTTCAGAGACTCCTACCTGCAGTTCTCCATAGCCACCTaGTGTTCTTCATCTCCTTCAGAGCCACTGACTCAGGTGTATGCC | + |
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Preference number: 5 (lower is better) Translates to: FLCFRDSYLQFSIAT*CSSSPSEPLTQVYA Trigger: GGCATACACCTGAGTCAGTGGCTCTGAAGGAGATGAAGAACACCAGGTGGCTATGGAGAACTGCAGGTAGGAGTCTCTGAAACACAGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CCA 90 bp | CTCCGTCTTTTCTGCTTTAGTCCAGGACCTGCTGTTCTCTTTACCTaGATGGCTGAAGTGTCCTTCTTACTTCACTCCTTGCCTCCGGAA | + |
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Preference number: 5 (lower is better) Translates to: LRLFCFSPGPAVLFT*MAEVSFLLHSLPPE Trigger: TTCCGGAGGCAAGGAGTGAAGTAAGAAGGACACTTCAGCCATCCAGGTAAAGAGAACAGCAGGTCCTGGACTAAAGCAGAAAAGACGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CCA 90 bp | GGGAGTCTAGGTTCTGGATATCCCTTGGGAAAGCGCCATTCACCATaGTGTTTCTTCCCTTGTAAGAGAAGGAAGGAGAGATTTGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: GSLGSGYPLGKRHSP*CFFPCKRRKERFEL Trigger: CAGCTCAAATCTCTCCTTCCTTCTCTTACAAGGGAAGAAACACCATGGTGAATGGCGCTTTCCCAAGGGATATCCAGAACCTAGACTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS TCA 90 bp | TGTAAAGCCCCAATACAGTCTCTGCCCCAGAGTAGGTGCCTTTGTTaGCACTGCAATAAAGAATCCTGGAAATGTAGATCCAGGAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: CKAPIQSLPQSRCLC*HCNKESWKCRSRRR Trigger: TCTTCTCCTGGATCTACATTTCCAGGATTCTTTATTGCAGTGTCAACAAAGGCACCTACTCTGGGGCAGAGACTGTATTGGGGCTTTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS TCA 90 bp | CTAATCTATGCCTCCAAGTCCAGCCTGGACCAGAATCAAACATTTTaGGCTATGGCCATCTGTGTCTTTAAGCATGAAGCTGTCCTTGTT | + |
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Preference number: 5 (lower is better) Translates to: LIYASKSSLDQNQTF*AMAICVFKHEAVLV Trigger: AACAAGGACAGCTTCATGCTTAAAGACACAGATGGCCATAGCTCAAAATGTTTGATTCTGGTCCAGGCTGGACTTGGAGGCATAGATTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS GCA 90 bp | TTCTCTTTACCTGGATGGCTGAAGTGTCCTTCTTACTTCACTCCTTaGCTCCGGAATCAACAGTACTGTCAGAAGCATGGTCTTTCTAAA | + |
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Preference number: 5 (lower is better) Translates to: FSLPGWLKCPSYFTP*LRNQQYCQKHGLSK Trigger: TTTAGAAAGACCATGCTTCTGACAGTACTGTTGATTCCGGAGGCAAGGAGTGAAGTAAGAAGGACACTTCAGCCATCCAGGTAAAGAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS GCA 72 bp | AGAAGGCAAGCCAGGGTTGGTATGGCAGCCTTGAGATaGTCAGGAGCCCAGGCTCCCATTATATTTCATCTT | + |
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Preference number: 6 (lower is better) Translates to: RRQARVGMAALR*SGAQAPIIFHL Trigger: AAGATGAAATATAATGGGAGCCTGGGCTCCTGAGCATCTCAAGGCTGCCATACCAACCCTGGCTTGCCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CAA 72 bp | TTCAGAAGAAGGCAAGCCAGGGTTGGTATGGCAGCCTaGAGATGCTCAGGAGCCCAGGCTCCCATTATATTT | + |
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Preference number: 6 (lower is better) Translates to: FRRRQARVGMAA*RCSGAQAPIIF Trigger: AAATATAATGGGAGCCTGGGCTCCTGAGCATCTCAAGGCTGCCATACCAACCCTGGCTTGCCTTCTTCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS GCA 72 bp | GAATATTCCTCAGGCCCCAGCCATCAGCCACTGCTATaGCATCTCAATTTCCTGTGTTTCAGAGACTCCTAC | + |
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Preference number: 6 (lower is better) Translates to: EYSSGPSHQPLL*HLNFLCFRDSY Trigger: GTAGGAGTCTCTGAAACACAGGAAATTGAGATGGCATAGCAGTGGCTGATGGCTGGGGCCTGAGGAATATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS GCA 72 bp | CCTGGATGGCTGAAGTGTCCTTCTTACTTCACTCCTTaGCTCCGGAATCAACAGTACTGTCAGAAGCATGGT | + |
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Preference number: 6 (lower is better) Translates to: PGWLKCPSYFTP*LRNQQYCQKHG Trigger: ACCATGCTTCTGACAGTACTGTTGATTCCGGAGGCAAGGAGTGAAGTAAGAAGGACACTTCAGCCATCCAGG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CCA 72 bp | TGCATGATCTCTTTGGGCCCTCCATCTCTGATAAACTaGGAGTCTAGGTTCTGGATATCCCTTGGGAAAGCG | + |
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Preference number: 6 (lower is better) Translates to: CMISLGPPSLIN*ESRFWISLGKA Trigger: CGCTTTCCCAAGGGATATCCAGAACCTAGACTCCCAGTTTATCAGAGATGGAGGGCCCAAAGAGATCATGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CCA 72 bp | TTGTACTCAAGCTCACTGTTAGCCCACGATAGTGGATaGAGCTTTAGTTTTTCATCGGCAGGGAGCAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: LYSSSLLAHDSG*SFSFSSAGSRK Trigger: CTTCCTGCTCCCTGCCGATGAAAAACTAAAGCTCCATCCACTATCGTGGGCTAACAGTGAGCTTGAGTACAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CCA 72 bp | GGTTCTGGATATCCCTTGGGAAAGCGCCATTCACCATaGTGTTTCTTCCCTTGTAAGAGAAGGAAGGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: GSGYPLGKRHSP*CFFPCKRRKER Trigger: TCTCTCCTTCCTTCTCTTACAAGGGAAGAAACACCATGGTGAATGGCGCTTTCCCAAGGGATATCCAGAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CAA 90 bp | TATGAGAATTTCAGAAGAAGGCAAGCCAGGGTTGGTATGGCAGCCTaGAGATGCTCAGGAGCCCAGGCTCCCATTATATTTCATCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: YENFRRRQARVGMAA*RCSGAQAPIIFHLL Trigger: AAGAAGATGAAATATAATGGGAGCCTGGGCTCCTGAGCATCTCAAGGCTGCCATACCAACCCTGGCTTGCCTTCTTCTGAAATTCTCATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS TCA 72 bp | GCCTCCAAGTCCAGCCTGGACCAGAATCAAACATTTTaGGCTATGGCCATCTGTGTCTTTAAGCATGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: ASKSSLDQNQTF*AMAICVFKHEA Trigger: AGCTTCATGCTTAAAGACACAGATGGCCATAGCTCAAAATGTTTGATTCTGGTCCAGGCTGGACTTGGAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CAA 72 bp | GCCATCTGTGTCTTTAAGCATGAAGCTGTCCTTGTTTaGACTCTGCTGCCTAGAAACCTTCAGACCATTCTC | + |
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Preference number: 6 (lower is better) Translates to: AICVFKHEAVLV*TLLPRNLQTIL Trigger: GAGAATGGTCTGAAGGTTTCTAGGCAGCAGAGTCAAAACAAGGACAGCTTCATGCTTAAAGACACAGATGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS TCA 72 bp | CCATCTGTGTCTTTAAGCATGAAGCTGTCCTTGTTTTaGCTCTGCTGCCTAGAAACCTTCAGACCATTCTCT | + |
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Preference number: 6 (lower is better) Translates to: PSVSLSMKLSLF*LCCLETFRPFS Trigger: AGAGAATGGTCTGAAGGTTTCTAGGCAGCAGAGTCAAAACAAGGACAGCTTCATGCTTAAAGACACAGATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS TCA 72 bp | ATGAATATGGAAATAATTTTGAGGCCAGGGGAGATGTaGGAATCAGGCCGCCTGGGTTTAAATCCATTGATG | + |
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Preference number: 6 (lower is better) Translates to: MNMEIILRPGEM*ESGRLGLNPLM Trigger: CATCAATGGATTTAAACCCAGGCGGCCTGATTCTCACATCTCCCCTGGCCTCAAAATTATTTCCATATTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS GCA 72 bp | CTATCCCTGAATTTTATAGGACAAATTACTGCCCCTTaGTGGACCTTGGTGTTGGTGTCCTGTTCTTTAAGA | + |
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Preference number: 6 (lower is better) Translates to: LSLNFIGQITAP*WTLVLVSCSLR Trigger: TCTTAAAGAACAGGACACCAACACCAAGGTCCAGCAAGGGGCAGTAATTTGTCCTATAAAATTCAGGGATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CAA 72 bp | TCTATCCCTGAATTTTATAGGACAAATTACTGCCCCTaGCTGGACCTTGGTGTTGGTGTCCTGTTCTTTAAG | + |
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Preference number: 6 (lower is better) Translates to: SIPEFYRTNYCP*LDLGVGVLFFK Trigger: CTTAAAGAACAGGACACCAACACCAAGGTCCAGCAAGGGGCAGTAATTTGTCCTATAAAATTCAGGGATAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS TCA 72 bp | AGTAGTCTCTGCCATATCAGTGAGGTATGGAGTCTATaGATCTGGGCATCAGGAGATAATGTTTCTAATTTC | + |
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Preference number: 6 (lower is better) Translates to: SSLCHISEVWSL*IWASGDNVSNF Trigger: GAAATTAGAAACATTATCTCCTGATGCCCAGATTCATAGACTCCATACCTCACTGATATGGCAGAGACTACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CAA 90 bp | GTGTTGCTAGTGGTCAAGGTAACACAAACAAATATTTGGTATCTATaGGGACCTATTAAAGAGCTCTCAATTTGCTGTCAAGATTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: VLLVVKVTQTNIWYL*GPIKELSICCQDSH Trigger: ATGAGAATCTTGACAGCAAATTGAGAGCTCTTTAATAGGTCCCAATAGATACCAAATATTTGTTTGTGTTACCTTGACCACTAGCAACAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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| CDS CAA 72 bp | GTGGTCAAGGTAACACAAACAAATATTTGGTATCTATaGGGACCTATTAAAGAGCTCTCAATTTGCTGTCAA | + |
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Preference number: 6 (lower is better) Translates to: VVKVTQTNIWYL*GPIKELSICCQ Trigger: TTGACAGCAAATTGAGAGCTCTTTAATAGGTCCCAATAGATACCAAATATTTGTTTGTGTTACCTTGACCAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561476.1 |
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