RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01611 (Homo sapiens)

Ensembl gene IDs: ENSG00000231776

Ensembl transcript IDs: ENST00000428896.1, ENST00000454172.5, ENST00000454981.5

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TTCTTCATACCATCACCATTCCTTCAGTGGTCCGGTGGCATATCCTaGTGTCCTCATCCCTTCAGGAGTAATTTTGAGCAGTGGAACTGT +
Preference number: 5 (lower is better)
Translates to: FFIPSPFLQWSGGIS*CPHPFRSNFEQWNC
Trigger: ACAGTTCCACTGCTCAAAATTACTCCTGAAGGGATGAGGACACCAGGATATGCCACCGGACCACTGAAGGAATGGTGATGGTATGAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454172.5
CDS TCA 90 bp CTGTACACTATTCACAATTCTTGGCTGGTCCCTTCTGTCTCAAAGTaGACAGTGACTGGTCAAGTTTTACTCACACTGTGTCATCCTGCC +
Preference number: 5 (lower is better)
Translates to: LYTIHNSWLVPSVSK*TVTGQVLLTLCHPA
Trigger: GGCAGGATGACACAGTGTGAGTAAAACTTGACCAGTCACTGTTCACTTTGAGACAGAAGGGACCAGCCAAGAATTGTGAATAGTGTACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000428896.1
CDS CCA 90 bp TTCTTCATACCATCACCATTCCTTCAGTGGTCCGGTGGCATATCCTaGTGTCCTCATCCCTTCAGGAGTAATTTTGAGCAGTGGAATTAT +
Preference number: 5 (lower is better)
Translates to: FFIPSPFLQWSGGIS*CPHPFRSNFEQWNY
Trigger: ATAATTCCACTGCTCAAAATTACTCCTGAAGGGATGAGGACACCAGGATATGCCACCGGACCACTGAAGGAATGGTGATGGTATGAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454981.5
CDS GCA 90 bp TTTAGATGGTGTCTGGTGCAAAGCAAATGCTGTAAGTCCTTGTTGTaGTTGTTATCATCCTTAGCTATATATCGACGGCTTTTAGAGCTT +
Preference number: 5 (lower is better)
Translates to: FRWCLVQSKCCKSLL*LLSSLAIYRRLLEL
Trigger: AAGCTCTAAAAGCCGTCGATATATAGCTAAGGATGATAACAAGCACAACAAGGACTTACAGCATTTGCTTTGCACCAGACACCATCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000428896.1
CDS GCA 90 bp CATTTCATCAAGTCCATTTTTGATCATCTGGGAATGAAATCTGGTTaGTTGAACCAGGGGAACAATTCTTTACAGGAACACTCAATCATT +
Preference number: 5 (lower is better)
Translates to: HFIKSIFDHLGMKSG*LNQGNNSLQEHSII
Trigger: AATGATTGAGTGTTCCTGTAAAGAATTGTTCCCCTGGTTCAAGCAACCAGATTTCATTCCCAGATGATCAAAAATGGACTTGATGAAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454172.5
CDS CCA 90 bp TTAATGATAGGTTCCTTTGAGTTAATATTTGTGAAGTGTTTTAGATaGTGTCTGGTGCAAAGCAAATGCTGTAAGTCCTTGTTGTGCTTG +
Preference number: 5 (lower is better)
Translates to: LMIGSFELIFVKCFR*CLVQSKCCKSLLCL
Trigger: CAAGCACAACAAGGACTTACAGCATTTGCTTTGCACCAGACACCATCTAAAACACTTCACAAATATTAACTCAAAGGAACCTATCATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454981.5
CDS TCA 72 bp ATTCTTGGCTGGTCCCTTCTGTCTCAAAGTGAACAGTaGCTGGTCAAGTTTTACTCACACTGTGTCATCCTG +
Preference number: 6 (lower is better)
Translates to: ILGWSLLSQSEQ*LVKFYSHCVIL
Trigger: CAGGATGACACAGTGTGAGTAAAACTTGACCAGTCACTGTTCACTTTGAGACAGAAGGGACCAGCCAAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000428896.1
CDS CAA 72 bp ACGGCTTTTAGAGCTTCTGTACACTATTCACAATTCTaGGCTGGTCCCTTCTGTCTCAAAGTGAACAGTGAC +
Preference number: 6 (lower is better)
Translates to: TAFRASVHYSQF*AGPFCLKVNSD
Trigger: GTCACTGTTCACTTTGAGACAGAAGGGACCAGCCAAGAATTGTGAATAGTGTACAGAAGCTCTAAAAGCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000428896.1
CDS CAA 72 bp GCATATCCTGGTGTCCTCATCCCTTCAGGAGTAATTTaGAGCAGTGGAACTGTTTCTATCAGTGCTTTTCCA +
Preference number: 6 (lower is better)
Translates to: AYPGVLIPSGVI*SSGTVSISAFP
Trigger: TGGAAAAGCACTGATAGAAACAGTTCCACTGCTCAAAATTACTCCTGAAGGGATGAGGACACCAGGATATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000454172.5
CDS TCA 72 bp ATTCACAATTCTTGGCTGGTCCCTTCTGTCTCAAAGTaGACAGTGACTGGTCAAGTTTTACTCACACTGTGT +
Preference number: 6 (lower is better)
Translates to: IHNSWLVPSVSK*TVTGQVLLTLC
Trigger: ACACAGTGTGAGTAAAACTTGACCAGTCACTGTTCACTTTGAGACAGAAGGGACCAGCCAAGAATTGTGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000428896.1
CDS CAA 72 bp TGGTGTCTGGTGCAAAGCAAATGCTGTAAGTCCTTGTaGTGCTTGTTATCATCCTTAGCTATATATCGACGG +
Preference number: 6 (lower is better)
Translates to: WCLVQSKCCKSL*CLLSSLAIYRR
Trigger: CCGTCGATATATAGCTAAGGATGATAACAAGCACAACAAGGACTTACAGCATTTGCTTTGCACCAGACACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000428896.1
ENST00000454981.5
CDS CAA 90 bp AGATGGTGTCTGGTGCAAAGCAAATGCTGTAAGTCCTTGTTGTGCTaGTTATCATCCTTAGCTATATATCGACGGCTTTTAGAGCTTCTG +
Preference number: 6 (lower is better)
Translates to: RWCLVQSKCCKSLLC*LSSLAIYRRLLELL
Trigger: CAGAAGCTCTAAAAGCCGTCGATATATAGCTAAGGATGATAACAAGCACAACAAGGACTTACAGCATTTGCTTTGCACCAGACACCATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000428896.1
CDS CAA 90 bp TGTTTTAGATGGTGTCTGGTGCAAAGCAAATGCTGTAAGTCCTTGTaGTGCTTGTTATCATCCTTAGCTATATATCGACGGCTTTTAGAG +
Preference number: 6 (lower is better)
Translates to: CFRWCLVQSKCCKSL*CLLSSLAIYRRLLE
Trigger: CTCTAAAAGCCGTCGATATATAGCTAAGGATGATAACAAGCACAACAAGGACTTACAGCATTTGCTTTGCACCAGACACCATCTAAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000428896.1
CDS GCA 72 bp GTGAAGTGTTTTAGATGGTGTCTGGTGCAAAGCAAATaGTGTAAGTCCTTGTTGTGCTTGTTATCATCCTTA +
Preference number: 6 (lower is better)
Translates to: VKCFRWCLVQSK*CKSLLCLLSSL
Trigger: TAAGGATGATAACAAGCACAACAAGGACTTACAGCATTTGCTTTGCACCAGACACCATCTAAAACACTTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000428896.1
ENST00000454981.5
CDS GCA 72 bp AAGTCCATTTTTGATCATCTGGGAATGAAATCTGGTTaGTTGAACCAGGGGAACAATTCTTTACAGGAACAC +
Preference number: 6 (lower is better)
Translates to: KSIFDHLGMKSG*LNQGNNSLQEH
Trigger: GTGTTCCTGTAAAGAATTGTTCCCCTGGTTCAAGCAACCAGATTTCATTCCCAGATGATCAAAAATGGACTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454172.5
CDS CAA 72 bp AGATGGTGTCTGGTGCAAAGCAAATGCTGTAAGTCCTaGTTGTGCTTGTTATCATCCTTAGCTATATATCGA +
Preference number: 6 (lower is better)
Translates to: RWCLVQSKCCKS*LCLLSSLAIYR
Trigger: TCGATATATAGCTAAGGATGATAACAAGCACAACAAGGACTTACAGCATTTGCTTTGCACCAGACACCATCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000428896.1
ENST00000454981.5
CDS CAA 72 bp TCCATTTTTGATCATCTGGGAATGAAATCTGGTTGCTaGAACCAGGGGAACAATTCTTTACAGGAACACTCA +
Preference number: 6 (lower is better)
Translates to: SIFDHLGMKSGC*NQGNNSLQEHS
Trigger: TGAGTGTTCCTGTAAAGAATTGTTCCCCTGGTTCAAGCAACCAGATTTCATTCCCAGATGATCAAAAATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454172.5
CDS CAA 90 bp AAGTGTTTTAGATGGTGTCTGGTGCAAAGCAAATGCTGTAAGTCCTaGTTGTGCTTGTTATCATCCTTAGCTATATATCGACGGCTTTTA +
Preference number: 6 (lower is better)
Translates to: KCFRWCLVQSKCCKS*LCLLSSLAIYRRLL
Trigger: TAAAAGCCGTCGATATATAGCTAAGGATGATAACAAGCACAACAAGGACTTACAGCATTTGCTTTGCACCAGACACCATCTAAAACACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000428896.1
CDS CAA 90 bp TTCATCAAGTCCATTTTTGATCATCTGGGAATGAAATCTGGTTGCTaGAACCAGGGGAACAATTCTTTACAGGAACACTCAATCATTTAT +
Preference number: 6 (lower is better)
Translates to: FIKSIFDHLGMKSGC*NQGNNSLQEHSIIY
Trigger: ATAAATGATTGAGTGTTCCTGTAAAGAATTGTTCCCCTGGTTCAAGCAACCAGATTTCATTCCCAGATGATCAAAAATGGACTTGATGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000454172.5