Pregenerated sensors for LINC01609 (Homo sapiens)
Ensembl gene IDs: ENSG00000253103Ensembl transcript IDs: ENST00000519506.1, ENST00000522778.1, ENST00000653374.1, ENST00000653400.1, ENST00000653848.1, ENST00000654293.1, ENST00000655136.1, ENST00000663639.1, ENST00000669352.1, ENST00000671497.1
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAGGGTCAGGGTCTTAGGCTGCACGTAGAAAGATGTGGATTATTCTaGGACTCTACATCCTCCAAATGCCAGCACTGCAATTTTTATATC | + |
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Preference number: 5 (lower is better) Translates to: EGQGLRLHVERCGLF*DSTSSKCQHCNFYI Trigger: GATATAAAAATTGCAGTGCTGGCATTTGGAGGATGTAGAGTCTCAGAATAATCCACATCTTTCTACGTGCAGCCTAAGACCCTGACCCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654293.1 |
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| CDS GCA 90 bp | TTGAGAGTGCTTGCTGTTCTGAAAACTGTATTTCCTAGGTTCTTCTaGTCAATGGTTACCATGTGGTTTCAACCAAGGGAAGCACTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LRVLAVLKTVFPRFF*SMVTMWFQPREALL Trigger: CAACAGTGCTTCCCTTGGTTGAAACCACATGGTAACCATTGAGCAGAAGAACCTAGGAAATACAGTTTTCAGAACAGCAAGCACTCTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653848.1 |
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| CDS GCA 90 bp | AGCTTTCTCCTTGCTGTTCTGAAAACTGTATTTCCTAGGTTCTTCTaGTCAATGGTTACCATGTGGTTTCAACCAAGGGAAGCACTGTTG | + |
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Preference number: 5 (lower is better) Translates to: SFLLAVLKTVFPRFF*SMVTMWFQPREALL Trigger: CAACAGTGCTTCCCTTGGTTGAAACCACATGGTAACCATTGAGCAGAAGAACCTAGGAAATACAGTTTTCAGAACAGCAAGGAGAAAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663639.1 |
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| CDS CCA 90 bp | TCTGCTCAATGGTTACCATGTGGTTTCAACCAAGGGAAGCACTGTTaGAAGACATTGGAGCACCCAGTGATCATATTGTTGAGATTTTTG | + |
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Preference number: 5 (lower is better) Translates to: SAQWLPCGFNQGKHC*KTLEHPVIILLRFL Trigger: CAAAAATCTCAACAATATGATCACTGGGTGCTCCAATGTCTTCCAACAGTGCTTCCCTTGGTTGAAACCACATGGTAACCATTGAGCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663639.1 |
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| CDS TCA 90 bp | ATGTGTGTCTCTGCACGTGAGATGGGTCTCCTGAATAAAACACACTaGTTGGTCTTGACTCTTTATCCAATTTGCCAGTCTGTGTTAAGT | + |
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Preference number: 5 (lower is better) Translates to: MCVSAREMGLLNKTH*LVLTLYPICQSVLS Trigger: ACTTAACACAGACTGGCAAATTGGATAAAGAGTCAAGACCAATCAGTGTGTTTTATTCAGGAGACCCATCTCACGTGCAGAGACACACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000522778.1 ENST00000653848.1 ENST00000655136.1 ENST00000663639.1 |
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| CDS TCA 90 bp | CCGTTCTGCTCTGATCTTAGTTATTTCTCGCCTTCTGCTAGCTTTTaGATGTCTTTGCTCTTGCTTCCTAGTTCTTTCAATTGTGATGTT | + |
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Preference number: 5 (lower is better) Translates to: PFCSDLSYFSPSASF*MSLLLLPSSFNCDV Trigger: AACATCACAATTGAAAGAACTAGGAAGCAAGAGCAAAGACATTCAAAAGCTAGCAGAAGGCGAGAAATAACTAAGATCAGAGCAGAACGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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| CDS GCA 90 bp | ATGCTATATGTTGTATTCTTATTTGCGTTATGGATGATACACTACTaGAGCCCAGAGCTTGGTAGCAGTTATAGCCATGGATCTTATAGG | + |
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Preference number: 5 (lower is better) Translates to: MLYVVFLFALWMIHY*SPELGSSYSHGSYR Trigger: CCTATAAGATCCATGGCTATAACTGCTACCAAGCTCTGGGCTGCAGTAGTGTATCATCCATAACGCAAATAAGAATACAACATATAGCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669352.1 |
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| CDS CCA 90 bp | AATAAGTGTGATGTGTTGCTGAGAAGAATGTATATTCTGTTGATTTaGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTTGGTGCA | + |
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Preference number: 5 (lower is better) Translates to: NKCDVLLRRMYILLI*GGEFCRCLLGLLGA Trigger: TGCACCAAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTCTTCTCAGCAACACATCACACTTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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| CDS TCA 90 bp | GTCTTTATTTTACTTCATTCAGTCTTTAATGAAGGCTGGCTTCTCTaGAGGTGTAAGATAGAAATGGTTTTGAGAGTGCTTGCTGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: VFILLHSVFNEGWLL*RCKIEMVLRVLAVL Trigger: CAGAACAGCAAGCACTCTCAAAACCATTTCTATCTTACACCTTCAGAGAAGCCAGCCTTCATTAAAGACTGAATGAAGTAAAATAAAGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653848.1 |
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| CDS CCA 90 bp | TCTAATGTTGACAGTGGGGTGTTAAAATCTCCCATTATTATTGTGTaGGAGTCTAAGTCTCTTTGTTGGTCTCTAAGGACTTGCTTTATA | + |
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Preference number: 5 (lower is better) Translates to: SNVDSGVLKSPIIIV*ESKSLCWSLRTCFI Trigger: TATAAAGCAAGTCCTTAGAGACCAACAAAGAGACTTAGACTCCCACACAATAATAATGGGAGATTTTAACACCCCACTGTCAACATTAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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| CDS GCA 90 bp | AGTTCTTTCAATTGTGATGTTAGGGTGTCAATTTTAGATCTTTCCTaGTTTCTGTTGTGGGCATTTAGTGCTATAAATTTCCCTCTACAC | + |
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Preference number: 5 (lower is better) Translates to: SSFNCDVRVSILDLS*FLLWAFSAINFPLH Trigger: GTGTAGAGGGAAATTTATAGCACTAAATGCCCACAACAGAAAGCAGGAAAGATCTAAAATTGACACCCTAACATCACAATTGAAAGAACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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| CDS TCA 72 bp | CATATACCTGTTGGTTCCTTCCCTCTCTGCCTTAGGTaGTCCAGCTGTAACCATGATACTCTCCCTTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: HIPVGSFPLCLR*SSCNHDTLPFP Trigger: GGGGAAAGGGAGAGTATCATGGTTACAGCTGGATCACCTAAGGCAGAGAGGGAAGGAACCAACAGGTATATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000522778.1 ENST00000653374.1 ENST00000653400.1 ENST00000653848.1 ENST00000654293.1 |
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| CDS GCA 72 bp | TTAGGCACCTTATTTGCGTTATGGATGATACACTACTaGAGCCCAGAGCTTGGTAGCAGTTATAGCCATGGA | + |
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Preference number: 6 (lower is better) Translates to: LGTLFALWMIHY*SPELGSSYSHG Trigger: TCCATGGCTATAACTGCTACCAAGCTCTGGGCTGCAGTAGTGTATCATCCATAACGCAAATAAGGTGCCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000519506.1 ENST00000653400.1 ENST00000671497.1 |
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| CDS CCA 72 bp | TGGTTACCATGTGGTTTCAACCAAGGGAAGCACTGTTaGAAGACATTGGAGCACCCAGTGATCATATTGTTG | + |
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Preference number: 6 (lower is better) Translates to: WLPCGFNQGKHC*KTLEHPVIILL Trigger: CAACAATATGATCACTGGGTGCTCCAATGTCTTCCAACAGTGCTTCCCTTGGTTGAAACCACATGGTAACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663639.1 |
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| CDS GCA 72 bp | TGGGAGTCTAAGTCTCTTTGTTGGTCTCTAAGGACTTaGTTTATAAATCTGGGTGCTCCTGTAATGGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: WESKSLCWSLRT*FINLGAPVMGA Trigger: TGCACCCATTACAGGAGCACCCAGATTTATAAAGCAAGTCCTTAGAGACCAACAAAGAGACTTAGACTCCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000522778.1 ENST00000655136.1 |
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| CDS CAA 72 bp | ATGGTTACCATGTGGTTTCAACCAAGGGAAGCACTGTaGGAAGACATTGGAGCACCCAGTGATCATATTGTT | + |
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Preference number: 6 (lower is better) Translates to: MVTMWFQPREAL*EDIGAPSDHIV Trigger: AACAATATGATCACTGGGTGCTCCAATGTCTTCCAACAGTGCTTCCCTTGGTTGAAACCACATGGTAACCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663639.1 |
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| CDS TCA 72 bp | TCTGCACGTGAGATGGGTCTCCTGAATAAAACACACTaGTTGGTCTTGACTCTTTATCCAATTTGCCAGTCT | + |
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Preference number: 6 (lower is better) Translates to: SAREMGLLNKTH*LVLTLYPICQS Trigger: AGACTGGCAAATTGGATAAAGAGTCAAGACCAATCAGTGTGTTTTATTCAGGAGACCCATCTCACGTGCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000522778.1 ENST00000653848.1 ENST00000655136.1 ENST00000663639.1 |
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| CDS GCA 72 bp | GTTGTATTCTTATTTGCGTTATGGATGATACACTACTaGAGCCCAGAGCTTGGTAGCAGTTATAGCCATGGA | + |
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Preference number: 6 (lower is better) Translates to: VVFLFALWMIHY*SPELGSSYSHG Trigger: TCCATGGCTATAACTGCTACCAAGCTCTGGGCTGCAGTAGTGTATCATCCATAACGCAAATAAGAATACAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669352.1 |
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| CDS CAA 72 bp | TGTGGTTTCAACCAAGGGAAGCACTGTTGGAAGACATaGGAGCACCCAGTGATCATATTGTTGAGATTTTTG | + |
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Preference number: 6 (lower is better) Translates to: CGFNQGKHCWKT*EHPVIILLRFL Trigger: CAAAAATCTCAACAATATGATCACTGGGTGCTCCAATGTCTTCCAACAGTGCTTCCCTTGGTTGAAACCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663639.1 |
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| CDS CAA 90 bp | TTCTGCTCAATGGTTACCATGTGGTTTCAACCAAGGGAAGCACTGTaGGAAGACATTGGAGCACCCAGTGATCATATTGTTGAGATTTTT | + |
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Preference number: 6 (lower is better) Translates to: FCSMVTMWFQPREAL*EDIGAPSDHIVEIF Trigger: AAAAATCTCAACAATATGATCACTGGGTGCTCCAATGTCTTCCAACAGTGCTTCCCTTGGTTGAAACCACATGGTAACCATTGAGCAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663639.1 |
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| CDS CAA 90 bp | AGGCCATTGCAGTTTACCATAAGAAAACAAAACTTCTATAGGACTTaGCCAAGTCTCAATGTAGTCCTCTCTGTAGCCTTCAATATAGGG | + |
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Preference number: 6 (lower is better) Translates to: RPLQFTIRKQNFYRT*PSLNVVLSVAFNIG Trigger: CCCTATATTGAAGGCTACAGAGAGGACTACATTGAGACTTGGCAAAGTCCTATAGAAGTTTTGTTTTCTTATGGTAAACTGCAATGGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653374.1 |
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| CDS TCA 72 bp | GGAGAAATAAACACCGGCAAGGTCATGCAGGATCTTTaGTGTACACACATTTTGAAACACTGCATTCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: GEINTGKVMQDL*CTHILKHCILH Trigger: ATGAAGAATGCAGTGTTTCAAAATGTGTGTACATCAAAGATCCTGCATGACCTTGCCGGTGTTTATTTCTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519506.1 |
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| CDS CCA 72 bp | GATGTGTTGCTGAGAAGAATGTATATTCTGTTGATTTaGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: DVLLRRMYILLI*GGEFCRCLLGL Trigger: CAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTCTTCTCAGCAACACATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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| CDS CAA 72 bp | TGGAGAAATAAACACCGGCAAGGTCATGCAGGATCTTaGATGTACACACATTTTGAAACACTGCATTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: WRNKHRQGHAGS*MYTHFETLHSS Trigger: TGAAGAATGCAGTGTTTCAAAATGTGTGTACATCAAAGATCCTGCATGACCTTGCCGGTGTTTATTTCTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519506.1 |
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| CDS CAA 90 bp | TTTTGGAATAAGTGTGATGTGTTGCTGAGAAGAATGTATATTCTGTaGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTAGGTCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: FWNKCDVLLRRMYIL*IWGGEFCRCLLGLL Trigger: AAGCAGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTCTTCTCAGCAACACATCACACTTATTCCAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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| CDS TCA 72 bp | TTACTTCATTCAGTCTTTAATGAAGGCTGGCTTCTCTaGAGGTGTAAGATAGAAATGGTTTTGAGAGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: LLHSVFNEGWLL*RCKIEMVLRVL Trigger: AAGCACTCTCAAAACCATTTCTATCTTACACCTTCAGAGAAGCCAGCCTTCATTAAAGACTGAATGAAGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653848.1 |
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| CDS TCA 72 bp | TCTGATCTTAGTTATTTCTCGCCTTCTGCTAGCTTTTaGATGTCTTTGCTCTTGCTTCCTAGTTCTTTCAAT | + |
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Preference number: 6 (lower is better) Translates to: SDLSYFSPSASF*MSLLLLPSSFN Trigger: ATTGAAAGAACTAGGAAGCAAGAGCAAAGACATTCAAAAGCTAGCAGAAGGCGAGAAATAACTAAGATCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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| CDS TCA 72 bp | TTACTTCATTCAGTCTTTAATGAAGGCTGGCTTCTCTaGAGGTGTAAGATAGAAATGGTTTTGAGAGTGCTA | + |
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Preference number: 6 (lower is better) Translates to: LLHSVFNEGWLL*RCKIEMVLRVL Trigger: TAGCACTCTCAAAACCATTTCTATCTTACACCTTCAGAGAAGCCAGCCTTCATTAAAGACTGAATGAAGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663639.1 |
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| CDS GCA 72 bp | GTTATTTCTCGCCTTCTGCTAGCTTTTGAATGTCTTTaGTCTTGCTTCCTAGTTCTTTCAATTGTGATGTTA | + |
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Preference number: 6 (lower is better) Translates to: VISRLLLAFECL*SCFLVLSIVML Trigger: TAACATCACAATTGAAAGAACTAGGAAGCAAGAGCAAAGACATTCAAAAGCTAGCAGAAGGCGAGAAATAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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| CDS CAA 72 bp | AAGTGTGATGTGTTGCTGAGAAGAATGTATATTCTGTaGATTTGGGGTGGAGAGTTCTGTAGATGTCTATTA | + |
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Preference number: 6 (lower is better) Translates to: KCDVLLRRMYIL*IWGGEFCRCLL Trigger: TAATAGACATCTACAGAACTCTCCACCCCAAATCAACAGAATATACATTCTTCTCAGCAACACATCACACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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| CDS TCA 72 bp | TTACTTCATTCAGTCTTTAATGAAGGCTGGCTTCTCTaGAGGTGTAAGATAGAAATGGTTTTGAGAGTGTTA | + |
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Preference number: 6 (lower is better) Translates to: LLHSVFNEGWLL*RCKIEMVLRVL Trigger: TAACACTCTCAAAACCATTTCTATCTTACACCTTCAGAGAAGCCAGCCTTCATTAAAGACTGAATGAAGTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000522778.1 ENST00000655136.1 |
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| CDS CAA 72 bp | CAACTATGTGGTCAATTTTGGAATAAGTGTGATGTGTaGCTGAGAAGAATGTATATTCTGTTGATTTGGGGT | + |
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Preference number: 6 (lower is better) Translates to: QLCGQFWNKCDV*LRRMYILLIWG Trigger: ACCCCAAATCAACAGAATATACATTCTTCTCAGCAACACATCACACTTATTCCAAAATTGACCACATAGTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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| CDS TCA 72 bp | TCAAATCTGAGTGACAATTTCAAATTCAAGGCCTCTTaGATTTGGCTAAAATTCATCGCAGTTATAGGTGAT | + |
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Preference number: 6 (lower is better) Translates to: SNLSDNFKFKAS*IWLKFIAVIGD Trigger: ATCACCTATAACTGCGATGAATTTTAGCCAAATTCAAGAGGCCTTGAATTTGAAATTGTCACTCAGATTTGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000654293.1 ENST00000663639.1 |
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| CDS CCA 72 bp | AGTTTCTTAATCCTGAGTTCTAGTTTGATTGCACTGTaGTCTGAGAGACAGTTTGTTATAATTTCTGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: SFLILSSSLIAL*SERQFVIISVL Trigger: AAGAACAGAAATTATAACAAACTGTCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAAACT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655136.1 |
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