Pregenerated sensors for LINC01603 (Homo sapiens)
Ensembl gene IDs: ENSG00000253479Ensembl transcript IDs: ENST00000517343.6, ENST00000519557.2, ENST00000653348.1, ENST00000659866.1, ENST00000666807.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCGCAGTTTTCTGCATTTAGCTTCAGGACCCTCTGCCAAGCCCAGTaGTACAAAGTCTTTTTGACTTGGGCATCCCTAGTCAGCTCTATC | + |
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Preference number: 5 (lower is better) Translates to: PQFSAFSFRTLCQAQ*YKVFLTWASLVSSI Trigger: GATAGAGCTGACTAGGGATGCCCAAGTCAAAAAGACTTTGTAGCACTGGGCTTGGCAGAGGGTCCTGAAGCTAAATGCAGAAAACTGCGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000653348.1 ENST00000659866.1 ENST00000666807.1 |
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| CDS TCA 90 bp | CAAATTCCAGGTTCATTGTCCTTGCTTACGACCTTTAGCCCCAGTTaGAGACATTTCCCGCAGTTTTCTGCATTTAGCTTCAGGACCCTC | + |
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Preference number: 5 (lower is better) Translates to: QIPGSLSLLTTFSPS*RHFPQFSAFSFRTL Trigger: GAGGGTCCTGAAGCTAAATGCAGAAAACTGCGGGAAATGTCTTCAACTGGGGCTAAAGGTCGTAAGCAAGGACAATGAACCTGGAATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000653348.1 ENST00000659866.1 ENST00000666807.1 |
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| CDS GCA 90 bp | CTTCACTGGAGTATGAATTCCTCCAAATTCCAGGTTCATTGTCCTTaGTTACGACCTTTAGCCCCAGTTGAAGACATTTCCCGCAGTTTT | + |
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Preference number: 5 (lower is better) Translates to: LHWSMNSSKFQVHCP*LRPLAPVEDISRSF Trigger: AAAACTGCGGGAAATGTCTTCAACTGGGGCTAAAGGTCGTAAGCAAGGACAATGAACCTGGAATTTGGAGGAATTCATACTCCAGTGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000653348.1 ENST00000659866.1 ENST00000666807.1 |
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| CDS TCA 90 bp | TCAGTCATTTGGCAAAGCCAACAAAGACTATGGCTTAAATGGGTCTaGATGATTGGAAGAACCATTGTTCTGCAGTTTCCCTCAGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: SVIWQSQQRLWLKWV*MIGRTIVLQFPSVV Trigger: CACAACTGAGGGAAACTGCAGAACAATGGTTCTTCCAATCATTCAGACCCATTTAAGCCATAGTCTTTGTTGGCTTTGCCAAATGACTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000517343.6 ENST00000653348.1 |
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| CDS CCA 90 bp | AGTAGGCAATCTGCTATTTTCATGAGGGGTCTGGAAATTCTTCACTaGAGTATGAATTCCTCCAAATTCCAGGTTCATTGTCCTTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: SRQSAIFMRGLEILH*SMNSSKFQVHCPCL Trigger: TAAGCAAGGACAATGAACCTGGAATTTGGAGGAATTCATACTCCAGTGAAGAATTTCCAGACCCCTCATGAAAATAGCAGATTGCCTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000653348.1 ENST00000659866.1 ENST00000666807.1 |
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| CDS TCA 90 bp | TTTCCTACAATAAACATAGAAATGGGAGCCAGTATATTAGCTCAGTaGAATCTCAAGGTAAACCTACTACGCTTCCTTTATTGCCCATCA | + |
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Preference number: 5 (lower is better) Translates to: FPTINIEMGASILAQ*NLKVNLLRFLYCPS Trigger: TGATGGGCAATAAAGGAAGCGTAGTAGGTTTACCTTGAGATTTCACTGAGCTAATATACTGGCTCCCATTTCTATGTTTATTGTAGGAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000659866.1 ENST00000666807.1 |
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| CDS CCA 72 bp | CTCTGCCAAGCCCAGTGCTACAAAGTCTTTTTGACTTaGGCATCCCTAGTCAGCTCTATCCCTGGATTAGTG | + |
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Preference number: 6 (lower is better) Translates to: LCQAQCYKVFLT*ASLVSSIPGLV Trigger: CACTAATCCAGGGATAGAGCTGACTAGGGATGCCCAAGTCAAAAAGACTTTGTAGCACTGGGCTTGGCAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000653348.1 ENST00000659866.1 ENST00000666807.1 |
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| CDS CAA 72 bp | CCTCTGCCAAGCCCAGTGCTACAAAGTCTTTTTGACTaGGGCATCCCTAGTCAGCTCTATCCCTGGATTAGT | + |
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Preference number: 6 (lower is better) Translates to: PLPSPVLQSLFD*GIPSQLYPWIS Trigger: ACTAATCCAGGGATAGAGCTGACTAGGGATGCCCAAGTCAAAAAGACTTTGTAGCACTGGGCTTGGCAGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000653348.1 ENST00000659866.1 ENST00000666807.1 |
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| CDS GCA 72 bp | TTCCCGCAGTTTTCTGCATTTAGCTTCAGGACCCTCTaGCAAGCCCAGTGCTACAAAGTCTTTTTGACTTGG | + |
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Preference number: 6 (lower is better) Translates to: FPQFSAFSFRTL*QAQCYKVFLTW Trigger: CCAAGTCAAAAAGACTTTGTAGCACTGGGCTTGGCAGAGGGTCCTGAAGCTAAATGCAGAAAACTGCGGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000653348.1 ENST00000659866.1 ENST00000666807.1 |
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| CDS CAA 90 bp | GGGCTCTCACCCTTTTGCTTGCCTGAAATCTACCCTTCTAATCATTaGCTTACCCTCCAGGGGCTGCTTAGTTTCAGCTTGAGTATTCTC | + |
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Preference number: 6 (lower is better) Translates to: GLSPFCLPEIYPSNH*LTLQGLLSFSLSIL Trigger: GAGAATACTCAAGCTGAAACTAAGCAGCCCCTGGAGGGTAAGCAAATGATTAGAAGGGTAGATTTCAGGCAAGCAAAAGGGTGAGAGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000517343.6 |
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| CDS CAA 72 bp | CCCTTTTGCTTGCCTGAAATCTACCCTTCTAATCATTaGCTTACCCTCCAGGGGCTGCTTAGTTTCAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: PFCLPEIYPSNH*LTLQGLLSFSL Trigger: CAAGCTGAAACTAAGCAGCCCCTGGAGGGTAAGCAAATGATTAGAAGGGTAGATTTCAGGCAAGCAAAAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000517343.6 |
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| CDS TCA 72 bp | GGTTCATTGTCCTTGCTTACGACCTTTAGCCCCAGTTaGAGACATTTCCCGCAGTTTTCTGCATTTAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: GSLSLLTTFSPS*RHFPQFSAFSF Trigger: GAAGCTAAATGCAGAAAACTGCGGGAAATGTCTTCAACTGGGGCTAAAGGTCGTAAGCAAGGACAATGAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000653348.1 ENST00000659866.1 ENST00000666807.1 |
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| CDS TCA 72 bp | TGGCAAAGCCAACAAAGACTATGGCTTAAATGGGTCTaGATGATTGGAAGAACCATTGTTCTGCAGTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: WQSQQRLWLKWV*MIGRTIVLQFP Trigger: GGGAAACTGCAGAACAATGGTTCTTCCAATCATTCAGACCCATTTAAGCCATAGTCTTTGTTGGCTTTGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000517343.6 ENST00000653348.1 |
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| CDS GCA 72 bp | AGTATGAATTCCTCCAAATTCCAGGTTCATTGTCCTTaGTTACGACCTTTAGCCCCAGTTGAAGACATTTCC | + |
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Preference number: 6 (lower is better) Translates to: SMNSSKFQVHCP*LRPLAPVEDIS Trigger: GGAAATGTCTTCAACTGGGGCTAAAGGTCGTAAGCAAGGACAATGAACCTGGAATTTGGAGGAATTCATACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000653348.1 ENST00000659866.1 ENST00000666807.1 |
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| CDS CAA 72 bp | TGTTCTGCAGTTTCCCTCAGTTGTGATATCCGACCCTaGTGCAATAAGTCCCACAGAAGGAAAATATTGACA | + |
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Preference number: 6 (lower is better) Translates to: CSAVSLSCDIRP*CNKSHRRKILT Trigger: TGTCAATATTTTCCTTCTGTGGGACTTATTGCACAAGGGTCGGATATCACAACTGAGGGAAACTGCAGAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000517343.6 ENST00000653348.1 |
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| CDS TCA 72 bp | AAAGCCAACAAAGACTATGGCTTAAATGGGTCTGAATaGTTGGAAGAACCATTGTTCTGCAGTTTCCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: KANKDYGLNGSE*LEEPLFCSFPQ Trigger: CTGAGGGAAACTGCAGAACAATGGTTCTTCCAATCATTCAGACCCATTTAAGCCATAGTCTTTGTTGGCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000517343.6 ENST00000653348.1 |
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| CDS GCA 72 bp | TCTGCAGTTTCCCTCAGTTGTGATATCCGACCCTTGTaGAATAAGTCCCACAGAAGGAAAATATTGACAAAA | + |
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Preference number: 6 (lower is better) Translates to: SAVSLSCDIRPL*NKSHRRKILTK Trigger: TTTTGTCAATATTTTCCTTCTGTGGGACTTATTGCACAAGGGTCGGATATCACAACTGAGGGAAACTGCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000517343.6 ENST00000653348.1 |
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| CDS CAA 72 bp | AACTTGCTTATGCCACAAGTATGTACTCAACACTATTaGACAGTGCTAATAGACCCAAGCATTCAGTCATTT | + |
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Preference number: 6 (lower is better) Translates to: NLLMPQVCTQHY*TVLIDPSIQSF Trigger: AAATGACTGAATGCTTGGGTCTATTAGCACTGTCAAATAGTGTTGAGTACATACTTGTGGCATAAGCAAGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000517343.6 ENST00000653348.1 |
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| CDS CAA 90 bp | ATAAATATTAACTTGCTTATGCCACAAGTATGTACTCAACACTATTaGACAGTGCTAATAGACCCAAGCATTCAGTCATTTGGCAAAGCC | + |
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Preference number: 6 (lower is better) Translates to: ININLLMPQVCTQHY*TVLIDPSIQSFGKA Trigger: GGCTTTGCCAAATGACTGAATGCTTGGGTCTATTAGCACTGTCAAATAGTGTTGAGTACATACTTGTGGCATAAGCAAGTTAATATTTAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000517343.6 ENST00000653348.1 |
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| CDS TCA 72 bp | ATAAACATAGAAATGGGAGCCAGTATATTAGCTCAGTaGAATCTCAAGGTAAACCTACTACGCTTCCTTTAT | + |
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Preference number: 6 (lower is better) Translates to: INIEMGASILAQ*NLKVNLLRFLY Trigger: ATAAAGGAAGCGTAGTAGGTTTACCTTGAGATTTCACTGAGCTAATATACTGGCTCCCATTTCTATGTTTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000659866.1 ENST00000666807.1 |
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| CDS CAA 72 bp | GTGAAATCTCAAGGTAAACCTACTACGCTTCCTTTATaGCCCATCAATAATCCTTTCATTTTGTCATGTTTT | + |
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Preference number: 6 (lower is better) Translates to: VKSQGKPTTLPL*PINNPFILSCF Trigger: AAAACATGACAAAATGAAAGGATTATTGATGGGCAATAAAGGAAGCGTAGTAGGTTTACCTTGAGATTTCAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000517343.6 ENST00000519557.2 ENST00000659866.1 ENST00000666807.1 |
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