Pregenerated sensors for LINC01602 (Homo sapiens)
Ensembl gene IDs: ENSG00000205293Ensembl transcript IDs: ENST00000522992.1, ENST00000650579.1, ENST00000668111.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTCCAGCTCCCAGGCCTTCTGCCTTTTCTCACCATCATCTCTGGGTaGTTCTGTCCTTGTCCACTTCCCCTAAGTGGCAGCTGCATTCAT | + |
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Preference number: 5 (lower is better) Translates to: FQLPGLLPFLTIISG*FCPCPLPLSGSCIH Trigger: ATGAATGCAGCTGCCACTTAGGGGAAGTGGACAAGGACAGAACCACCCAGAGATGATGGTGAGAAAAGGCAGAAGGCCTGGGAGCTGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650579.1 |
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| CDS CCA 90 bp | CCTTGTCCACTTCCCCTAAGTGGCAGCTGCATTCATTTTGGTGGCTaGAGAGACTTTGGTTCCTTAGAGTTGGTGATGCTTCTTCTGCCC | + |
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Preference number: 5 (lower is better) Translates to: PCPLPLSGSCIHFGG*RDFGSLELVMLLLP Trigger: GGGCAGAAGAAGCATCACCAACTCTAAGGAACCAAAGTCTCTCCAGCCACCAAAATGAATGCAGCTGCCACTTAGGGGAAGTGGACAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650579.1 |
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| CDS CCA 90 bp | CTGTCCTTGTCCACTTCCCCTAAGTGGCAGCTGCATTCATTTTGGTaGCTGGAGAGACTTTGGTTCCTTAGAGTTGGTGATGCTTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: LSLSTSPKWQLHSFW*LERLWFLRVGDASS Trigger: AGAAGAAGCATCACCAACTCTAAGGAACCAAAGTCTCTCCAGCCACCAAAATGAATGCAGCTGCCACTTAGGGGAAGTGGACAAGGACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650579.1 |
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| CDS CCA 90 bp | GTTCTGTCCTTGTCCACTTCCCCTAAGTGGCAGCTGCATTCATTTTaGTGGCTGGAGAGACTTTGGTTCCTTAGAGTTGGTGATGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: VLSLSTSPKWQLHSF*WLERLWFLRVGDAS Trigger: AGAAGCATCACCAACTCTAAGGAACCAAAGTCTCTCCAGCCACCAAAATGAATGCAGCTGCCACTTAGGGGAAGTGGACAAGGACAGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650579.1 |
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| CDS GCA 90 bp | GGATTTCTTTCCTCTTGTCATGAACATCGGTCTTGTCCCAAAGGATaGTGTGATCTTTTACTCCATGGAGTCATTTTCCAGCTCCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: GFLSSCHEHRSCPKG*CDLLLHGVIFQLPG Trigger: GCCTGGGAGCTGGAAAATGACTCCATGGAGTAAAAGATCACAGCATCCTTTGGGACAAGACCGATGTTCATGACAAGAGGAAAGAAATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650579.1 |
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| CDS CCA 90 bp | TTTCTGTTCCTTTTGATTTACTTGGATTTCTTTCCTAGTTCCACGTaGCTGGAGCGGCCTCAGAATCATGGCAGGAGGAGAAAGGCACTT | + |
|
Preference number: 5 (lower is better) Translates to: FLFLLIYLDFFPSST*LERPQNHGRRRKAL Trigger: AAGTGCCTTTCTCCTCCTGCCATGATTCTGAGGCCGCTCCAGCCACGTGGAACTAGGAAAGAAATCCAAGTAAATCAAAAGGAACAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522992.1 |
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| CDS TCA 90 bp | TATATTGCAAAGTTTCAAATGACAATGGAGGTGTGGAGTTTAGTTTaGTCAGGTGGTCAGGAAGGGCTCACTGGGGAGTTGGCATTTGAG | + |
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Preference number: 5 (lower is better) Translates to: YIAKFQMTMEVWSLV*SGGQEGLTGELAFE Trigger: CTCAAATGCCAACTCCCCAGTGAGCCCTTCCTGACCACCTGATCAAACTAAACTCCACACCTCCATTGTCATTTGAAACTTTGCAATATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668111.1 |
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| CDS CCA 72 bp | GTCAGGGGTCAGTCTTTAACTACTAGGCCCAGGGTGTaGCGCCGGGCTGTCTTCCTGTGGGTGTCATTTCTG | + |
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Preference number: 6 (lower is better) Translates to: VRGQSLTTRPRV*RRAVFLWVSFL Trigger: CAGAAATGACACCCACAGGAAGACAGCCCGGCGCCACACCCTGGGCCTAGTAGTTAAAGACTGACCCCTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000522992.1 ENST00000650579.1 |
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| CDS CCA 72 bp | GGTCGTGATCAATTGAGCAAGCAGAGGGTATGTGACTaGGGGCTGCATGCACCTGCACTGGTAATTAGAACG | + |
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Preference number: 6 (lower is better) Translates to: GRDQLSKQRVCD*GLHAPALVIRT Trigger: CGTTCTAATTACCAGTGCAGGTGCATGCAGCCCCCAGTCACATACCCTCTGCTTGCTCAATTGATCACGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000522992.1 ENST00000650579.1 |
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| CDS CCA 72 bp | TTTAACTCCACAGACCATGCCACAAACGGCACCCCCTaGGGTAAGGCTCACAGCAACCCTGGTGTTAAAAAT | + |
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Preference number: 6 (lower is better) Translates to: FNSTDHATNGTP*GKAHSNPGVKN Trigger: ATTTTTAACACCAGGGTTGCTGTGAGCCTTACCCCAGGGGGTGCCGTTTGTGGCATGGTCTGTGGAGTTAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000522992.1 ENST00000650579.1 |
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| CDS CCA 72 bp | TGGCAGCTGCATTCATTTTGGTGGCTGGAGAGACTTTaGTTCCTTAGAGTTGGTGATGCTTCTTCTGCCCCT | + |
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Preference number: 6 (lower is better) Translates to: WQLHSFWWLERL*FLRVGDASSAP Trigger: AGGGGCAGAAGAAGCATCACCAACTCTAAGGAACCAAAGTCTCTCCAGCCACCAAAATGAATGCAGCTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650579.1 |
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| CDS CAA 72 bp | GCCTTTTCTCACCATCATCTCTGGGTGGTTCTGTCCTaGTCCACTTCCCCTAAGTGGCAGCTGCATTCATTT | + |
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Preference number: 6 (lower is better) Translates to: AFSHHHLWVVLS*STSPKWQLHSF Trigger: AAATGAATGCAGCTGCCACTTAGGGGAAGTGGACAAGGACAGAACCACCCAGAGATGATGGTGAGAAAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650579.1 |
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| CDS GCA 72 bp | TCAGGCATCACAATGGGGAGTGGTGAAGTGATGAGGTaGATAAGAAGTAAAGCTGGGAGACTGGAAACTCCA | + |
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Preference number: 6 (lower is better) Translates to: SGITMGSGEVMR*IRSKAGRLETP Trigger: TGGAGTTTCCAGTCTCCCAGCTTTACTTCTTATGCACCTCATCACTTCACCACTCCCCATTGTGATGCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668111.1 |
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| CDS CCA 72 bp | CTTCCCCTAAGTGGCAGCTGCATTCATTTTGGTGGCTaGAGAGACTTTGGTTCCTTAGAGTTGGTGATGCTT | + |
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Preference number: 6 (lower is better) Translates to: LPLSGSCIHFGG*RDFGSLELVML Trigger: AAGCATCACCAACTCTAAGGAACCAAAGTCTCTCCAGCCACCAAAATGAATGCAGCTGCCACTTAGGGGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650579.1 |
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| CDS CCA 72 bp | TCCACTTCCCCTAAGTGGCAGCTGCATTCATTTTGGTaGCTGGAGAGACTTTGGTTCCTTAGAGTTGGTGAT | + |
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Preference number: 6 (lower is better) Translates to: STSPKWQLHSFW*LERLWFLRVGD Trigger: ATCACCAACTCTAAGGAACCAAAGTCTCTCCAGCCACCAAAATGAATGCAGCTGCCACTTAGGGGAAGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650579.1 |
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| CDS GCA 72 bp | TCCTCTTGTCATGAACATCGGTCTTGTCCCAAAGGATaGTGTGATCTTTTACTCCATGGAGTCATTTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: SSCHEHRSCPKG*CDLLLHGVIFQ Trigger: CTGGAAAATGACTCCATGGAGTAAAAGATCACAGCATCCTTTGGGACAAGACCGATGTTCATGACAAGAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650579.1 |
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| CDS CAA 72 bp | ATTTTTGGAGTAAAGCCAAGAGAACTTGAAAATGGATaGTATTGTAGAGGTGAGATGATACGAATAGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: IFGVKPRELENG*YCRGEMIRIGK Trigger: TTTCCCTATTCGTATCATCTCACCTCTACAATACAATCCATTTTCAAGTTCTCTTGGCTTTACTCCAAAAAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000668111.1 |
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