Pregenerated sensors for LINC01597 (Homo sapiens)
Ensembl gene IDs: ENSG00000205611Ensembl transcript IDs: ENST00000380888.5
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGACTCCGCGGCTGCAGCAGGAGCCTCGCTGCCACCCCGCAGCGCTaGCATTATTTAAAGGGGACGCAGCCTGACTGCCAGGAGCGGAGC | + |
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Preference number: 5 (lower is better) Translates to: RLRGCSRSLAATPQR*HYLKGTQPDCQERS Trigger: GCTCCGCTCCTGGCAGTCAGGCTGCGTCCCCTTTAAATAATGGCAGCGCTGCGGGGTGGCAGCGAGGCTCCTGCTGCAGCCGCGGAGTCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CCA 90 bp | CCTGACTGCCAGGAGCGGAGCGCGAGTCCGCCCAGCCAATGCTCCTaGGCGAGGCGCGAGTGGCTTTTCCCATCACAGTGGTTCCACGGT | + |
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Preference number: 5 (lower is better) Translates to: PDCQERSASPPSQCS*ARREWLFPSQWFHG Trigger: ACCGTGGAACCACTGTGATGGGAAAAGCCACTCGCGCCTCGCCCAGGAGCATTGGCTGGGCGGACTCGCGCTCCGCTCCTGGCAGTCAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 90 bp | CCACGCTGCCTCAAATTGGACCCCGGATGCAGCCGACTCCGCGGCTaGAGCAGGAGCCTCGCTGCCACCCCGCAGCGCTGCCATTATTTA | + |
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Preference number: 5 (lower is better) Translates to: PRCLKLDPGCSRLRG*SRSLAATPQRCHYL Trigger: TAAATAATGGCAGCGCTGCGGGGTGGCAGCGAGGCTCCTGCTGCAGCCGCGGAGTCGGCTGCATCCGGGGTCCAATTTGAGGCAGCGTGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 90 bp | AAAGTCGTGCCGCCATCCGTGATCTCTAAGACAGGTCGGCCTGCGTaGCCCTGGGCTGCTCTCTCATCCGAGGGTCGTTCTCGTCGAGAG | + |
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Preference number: 5 (lower is better) Translates to: KVVPPSVISKTGRPA*PWAALSSEGRSRRE Trigger: CTCTCGACGAGAACGACCCTCGGATGAGAGAGCAGCCCAGGGGCACGCAGGCCGACCTGTCTTAGAGATCACGGATGGCGGCACGACTTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS TCA 90 bp | CACAGCATCCCAGCCTCAGGCCTGCCCGGACCGTGTTGGTTGGGTTaGCTCTCCCCAAAAGTCGTGCCGCCATCCGTGATCTCTAAGACA | + |
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Preference number: 5 (lower is better) Translates to: HSIPASGLPGPCWLG*LSPKVVPPSVISKT Trigger: TGTCTTAGAGATCACGGATGGCGGCACGACTTTTGGGGAGAGTCAACCCAACCAACACGGTCCGGGCAGGCCTGAGGCTGGGATGCTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS TCA 90 bp | CCAGTGCCACGCGTGGTCACATGGTCTCCATCTCGGATTCACCCCTaGTCCTCTTTCTACCAGTCCCATAAAGCGCGGTCGGCTTTCCGG | + |
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Preference number: 5 (lower is better) Translates to: PVPRVVTWSPSRIHP*SSFYQSHKARSAFR Trigger: CCGGAAAGCCGACCGCGCTTTATGGGACTGGTAGAAAGAGGATCAGGGGTGAATCCGAGATGGAGACCATGTGACCACGCGTGGCACTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CCA 90 bp | AGCCAATGCTCCTGGGCGAGGCGCGAGTGGCTTTTCCCATCACAGTaGTTCCACGGTTGTCTTAGAAACCAGTCCCCGAGGCTTAGAAAA | + |
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Preference number: 5 (lower is better) Translates to: SQCSWARREWLFPSQ*FHGCLRNQSPRLRK Trigger: TTTTCTAAGCCTCGGGGACTGGTTTCTAAGACAACCGTGGAACCACTGTGATGGGAAAAGCCACTCGCGCCTCGCCCAGGAGCATTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS TCA 90 bp | AGGACAGGTGGTGTCGCATTTCCTCTGCACTTCATGTCTCATTCGTaGGAGACATCCTCTCCTCTGCTCCTGGGTGGACTGAGTCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: RTGGVAFPLHFMSHS*ETSSPLLLGGLSLW Trigger: CCAGAGACTCAGTCCACCCAGGAGCAGAGGAGAGGATGTCTCTCACGAATGAGACATGAAGTGCAGAGGAAATGCGACACCACCTGTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 90 bp | TCGCCATCACAATGTATGCCTCCGGTGACACACATTCACACCATCTaGTGTGGGATACACCAGTGCCACGCGTGGTCACATGGTCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: SPSQCMPPVTHIHTI*CGIHQCHAWSHGLH Trigger: ATGGAGACCATGTGACCACGCGTGGCACTGGTGTATCCCACAGCAGATGGTGTGAATGTGTGTCACCGGAGGCATACATTGTGATGGCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CCA 90 bp | ATCACAATGTATGCCTCCGGTGACACACATTCACACCATCTGCTGTaGGATACACCAGTGCCACGCGTGGTCACATGGTCTCCATCTCGG | + |
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Preference number: 5 (lower is better) Translates to: ITMYASGDTHSHHLL*DTPVPRVVTWSPSR Trigger: CCGAGATGGAGACCATGTGACCACGCGTGGCACTGGTGTATCCCACAGCAGATGGTGTGAATGTGTGTCACCGGAGGCATACATTGTGAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 90 bp | CGTGACAGACCTTGTCTTCTAGGACAGGTGGTGTCGCATTTCCTCTaGACTTCATGTCTCATTCGTGAGAGACATCCTCTCCTCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: RDRPCLLGQVVSHFL*TSCLIRERHPLLCS Trigger: GGAGCAGAGGAGAGGATGTCTCTCACGAATGAGACATGAAGTGCAGAGGAAATGCGACACCACCTGTCCTAGAAGACAAGGTCTGTCACG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CCA 90 bp | CTTCATGTCTCATTCGTGAGAGACATCCTCTCCTCTGCTCCTGGGTaGACTGAGTCTCTGGATCTTTTGACCATAACGAATGTCGGGGAA | + |
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Preference number: 5 (lower is better) Translates to: LHVSFVRDILSSAPG*TESLDLLTITNVGE Trigger: TTCCCCGACATTCGTTATGGTCAAAAGATCCAGAGACTCAGTCCACCCAGGAGCAGAGGAGAGGATGTCTCTCACGAATGAGACATGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 72 bp | CTCAAATTGGACCCCGGATGCAGCCGACTCCGCGGCTaGAGCAGGAGCCTCGCTGCCACCCCGCAGCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LKLDPGCSRLRG*SRSLAATPQRC Trigger: GCAGCGCTGCGGGGTGGCAGCGAGGCTCCTGCTGCAGCCGCGGAGTCGGCTGCATCCGGGGTCCAATTTGAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CCA 72 bp | GCTGGGGCTGGGTCTGCGGCTGGTTGCAGGGGAGGTTaGGTCAGGGCTACCTGGGCCATGGAGGGTTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: AGAGSAAGCRGG*VRATWAMEGWG Trigger: CCCCCAACCCTCCATGGCCCAGGTAGCCCTGACCCAACCTCCCCTGCAACCAGCCGCAGACCCAGCCCCAGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 72 bp | GCCCCTCTCCCACGCTGCCTCAAATTGGACCCCGGATaGAGCCGACTCCGCGGCTGCAGCAGGAGCCTCGCT | + |
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Preference number: 6 (lower is better) Translates to: APLPRCLKLDPG*SRLRGCSRSLA Trigger: AGCGAGGCTCCTGCTGCAGCCGCGGAGTCGGCTGCATCCGGGGTCCAATTTGAGGCAGCGTGGGAGAGGGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 72 bp | GGCTGCAGCAGGAGCCTCGCTGCCACCCCGCAGCGCTaGCATTATTTAAAGGGGACGCAGCCTGACTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: GCSRSLAATPQR*HYLKGTQPDCQ Trigger: CTGGCAGTCAGGCTGCGTCCCCTTTAAATAATGGCAGCGCTGCGGGGTGGCAGCGAGGCTCCTGCTGCAGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 72 bp | ATGCAGCCGACTCCGCGGCTGCAGCAGGAGCCTCGCTaGCACCCCGCAGCGCTGCCATTATTTAAAGGGGAC | + |
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Preference number: 6 (lower is better) Translates to: MQPTPRLQQEPR*HPAALPLFKGD Trigger: GTCCCCTTTAAATAATGGCAGCGCTGCGGGGTGGCAGCGAGGCTCCTGCTGCAGCCGCGGAGTCGGCTGCAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CCA 72 bp | GCATCCCAGCCTCAGGCCTGCCCGGACCGTGTTGGTTaGGTTGACTCTCCCCAAAAGTCGTGCCGCCATCCG | + |
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Preference number: 6 (lower is better) Translates to: ASQPQACPDRVG*VDSPQKSCRHP Trigger: CGGATGGCGGCACGACTTTTGGGGAGAGTCAACCCAACCAACACGGTCCGGGCAGGCCTGAGGCTGGGATGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CAA 72 bp | GCACAGCATCCCAGCCTCAGGCCTGCCCGGACCGTGTaGGTTGGGTTGACTCTCCCCAAAAGTCGTGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: AQHPSLRPARTV*VGLTLPKSRAA Trigger: GGCGGCACGACTTTTGGGGAGAGTCAACCCAACCAACACGGTCCGGGCAGGCCTGAGGCTGGGATGCTGTGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 72 bp | CCGCCATCCGTGATCTCTAAGACAGGTCGGCCTGCGTaGCCCTGGGCTGCTCTCTCATCCGAGGGTCGTTCT | + |
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Preference number: 6 (lower is better) Translates to: PPSVISKTGRPA*PWAALSSEGRS Trigger: AGAACGACCCTCGGATGAGAGAGCAGCCCAGGGGCACGCAGGCCGACCTGTCTTAGAGATCACGGATGGCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CAA 72 bp | CCCAGCCTCAGGCCTGCCCGGACCGTGTTGGTTGGGTaGACTCTCCCCAAAAGTCGTGCCGCCATCCGTGAT | + |
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Preference number: 6 (lower is better) Translates to: PSLRPARTVLVG*TLPKSRAAIRD Trigger: ATCACGGATGGCGGCACGACTTTTGGGGAGAGTCAACCCAACCAACACGGTCCGGGCAGGCCTGAGGCTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 72 bp | TCCGGGAAAAGCAGCACAGCATCCCAGCCTCAGGCCTaGCCGGACCGTGTTGGTTGGGTTGACTCTCCCCAA | + |
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Preference number: 6 (lower is better) Translates to: SGKSSTASQPQA*PDRVGWVDSPQ Trigger: TTGGGGAGAGTCAACCCAACCAACACGGTCCGGGCAGGCCTGAGGCTGGGATGCTGTGCTGCTTTTCCCGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS TCA 72 bp | CTCCAGATGCCAGGAGTCGCAAAGCGCCAAACAGGATaGGGAAACCCCAGGCGGAGTCCGGGAAAAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: LQMPGVAKRQTG*GNPRRSPGKAA Trigger: TGCTGCTTTTCCCGGACTCCGCCTGGGGTTTCCTCATCCTGTTTGGCGCTTTGCGACTCCTGGCATCTGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CCA 72 bp | TCCTGGGCGAGGCGCGAGTGGCTTTTCCCATCACAGTaGTTCCACGGTTGTCTTAGAAACCAGTCCCCGAGG | + |
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Preference number: 6 (lower is better) Translates to: SWARREWLFPSQ*FHGCLRNQSPR Trigger: CCTCGGGGACTGGTTTCTAAGACAACCGTGGAACCACTGTGATGGGAAAAGCCACTCGCGCCTCGCCCAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS TCA 72 bp | CGCGTGGTCACATGGTCTCCATCTCGGATTCACCCCTaGTCCTCTTTCTACCAGTCCCATAAAGCGCGGTCG | + |
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Preference number: 6 (lower is better) Translates to: RVVTWSPSRIHP*SSFYQSHKARS Trigger: CGACCGCGCTTTATGGGACTGGTAGAAAGAGGATCAGGGGTGAATCCGAGATGGAGACCATGTGACCACGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CCA 72 bp | TATGCCTCCGGTGACACACATTCACACCATCTGCTGTaGGATACACCAGTGCCACGCGTGGTCACATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: YASGDTHSHHLL*DTPVPRVVTWS Trigger: AGACCATGTGACCACGCGTGGCACTGGTGTATCCCACAGCAGATGGTGTGAATGTGTGTCACCGGAGGCATA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS TCA 72 bp | GGTGTCGCATTTCCTCTGCACTTCATGTCTCATTCGTaGGAGACATCCTCTCCTCTGCTCCTGGGTGGACTG | + |
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Preference number: 6 (lower is better) Translates to: GVAFPLHFMSHS*ETSSPLLLGGL Trigger: CAGTCCACCCAGGAGCAGAGGAGAGGATGTCTCTCACGAATGAGACATGAAGTGCAGAGGAAATGCGACACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 72 bp | CAATGTATGCCTCCGGTGACACACATTCACACCATCTaGTGTGGGATACACCAGTGCCACGCGTGGTCACAT | + |
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Preference number: 6 (lower is better) Translates to: QCMPPVTHIHTI*CGIHQCHAWSH Trigger: ATGTGACCACGCGTGGCACTGGTGTATCCCACAGCAGATGGTGTGAATGTGTGTCACCGGAGGCATACATTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS TCA 72 bp | CGTGAGAGACATCCTCTCCTCTGCTCCTGGGTGGACTaGGTCTCTGGATCTTTTGACCATAACGAATGTCGG | + |
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Preference number: 6 (lower is better) Translates to: RERHPLLCSWVD*VSGSFDHNECR Trigger: CCGACATTCGTTATGGTCAAAAGATCCAGAGACTCAGTCCACCCAGGAGCAGAGGAGAGGATGTCTCTCACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS TCA 72 bp | CATTGTTGGTTTCGCCATCACAATGTATGCCTCCGGTaGCACACATTCACACCATCTGCTGTGGGATACACC | + |
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Preference number: 6 (lower is better) Translates to: HCWFRHHNVCLR*HTFTPSAVGYT Trigger: GGTGTATCCCACAGCAGATGGTGTGAATGTGTGTCACCGGAGGCATACATTGTGATGGCGAAACCAACAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS GCA 72 bp | CCTTGTCTTCTAGGACAGGTGGTGTCGCATTTCCTCTaGACTTCATGTCTCATTCGTGAGAGACATCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: PCLLGQVVSHFL*TSCLIRERHPL Trigger: GAGAGGATGTCTCTCACGAATGAGACATGAAGTGCAGAGGAAATGCGACACCACCTGTCCTAGAAGACAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS TCA 72 bp | AAGGCACAGGCACCCTCCTCGTTCCCAGGTGTTCTTTaGTTTTCCTTGGCATTGATGGAAAGGTCACTCATT | + |
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Preference number: 6 (lower is better) Translates to: KAQAPSSFPGVL*FSLALMERSLI Trigger: AATGAGTGACCTTTCCATCAATGCCAAGGAAAATCAAAGAACACCTGGGAACGAGGAGGGTGCCTGTGCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CCA 72 bp | TCATTCGTGAGAGACATCCTCTCCTCTGCTCCTGGGTaGACTGAGTCTCTGGATCTTTTGACCATAACGAAT | + |
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Preference number: 6 (lower is better) Translates to: SFVRDILSSAPG*TESLDLLTITN Trigger: ATTCGTTATGGTCAAAAGATCCAGAGACTCAGTCCACCCAGGAGCAGAGGAGAGGATGTCTCTCACGAATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS TCA 72 bp | CCTGCTGAATCAAAACTAACATTCAACTCCATTAGATaGATCCACACATCTCAAAGCATTTTCACAGATAGC | + |
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Preference number: 6 (lower is better) Translates to: PAESKLTFNSIR*IHTSQSIFTDS Trigger: GCTATCTGTGAAAATGCTTTGAGATGTGTGGATTCATCTAATGGAGTTGAATGTTAGTTTTGATTCAGCAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CCA 72 bp | TATCACAAGATATTCAGTTTTCACTATAGGCCTCTGTaGGCTCTGAAATGTTCCTTTGTAGATTCCACAAAA | + |
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Preference number: 6 (lower is better) Translates to: YHKIFSFHYRPL*ALKCSFVDSTK Trigger: TTTTGTGGAATCTACAAAGGAACATTTCAGAGCCCACAGAGGCCTATAGTGAAAACTGAATATCTTGTGATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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| CDS CAA 72 bp | TTTAGGTTTTTCACTACAAGCCTCAATCAATGGGCTTaGAAATATCTCCTCATCAATTGTACAAAAAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: FRFFTTSLNQWA*KYLLINCTKRE Trigger: CTCTCTTTTTGTACAATTGATGAGGAGATATTTCAAAGCCCATTGATTGAGGCTTGTAGTGAAAAACCTAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000380888.5 |
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