Pregenerated sensors for LINC01594 (Homo sapiens)
Ensembl gene IDs: ENSG00000225328Ensembl transcript IDs: ENST00000445083.2, ENST00000666270.1, ENST00000669479.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCTGAAAGTACGTCACTTGCACAATTCTGGAGACTACCTTCCTGTTaGCCTCCAGAGCACTCTGGCCTCGTTTTCTTCACATCCTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: PESTSLAQFWRLPSC*PPEHSGLVFFTSLE Trigger: CTCCAAGGATGTGAAGAAAACGAGGCCAGAGTGCTCTGGAGGCCAACAGGAAGGTAGTCTCCAGAATTGTGCAAGTGACGTACTTTCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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| CDS GCA 90 bp | AGTCCTGCCATAGAGACTTTGGCCTGGCATTTCCTCTGCCAAGAATaGTCTTCGATCAAACAGCTACATGACCCTCTCCTCATATCCTTC | + |
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Preference number: 5 (lower is better) Translates to: SPAIETLAWHFLCQE*SSIKQLHDPLLISF Trigger: GAAGGATATGAGGAGAGGGTCATGTAGCTGTTTGATCGAAGAGCATTCTTGGCAGAGGAAATGCCAGGCCAAAGTCTCTATGGCAGGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445083.2 |
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| CDS TCA 90 bp | GCAGTCTTCTCTAACATACTGCCACCAAGTGAGGGCCTGAGTGAATaGCAAGCTTTGATTCCTGTAGAACATTTTATCTCTCCTCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: AVFSNILPPSEGLSE*QALIPVEHFISPPL Trigger: CAGAGGAGGAGAGATAAAATGTTCTACAGGAATCAAAGCTTGTCATTCACTCAGGCCCTCACTTGGTGGCAGTATGTTAGAGAAGACTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000666270.1 ENST00000669479.1 |
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| CDS TCA 90 bp | CTGGCATTTCCTCTGCCAAGAATGCTCTTCGATCAAACAGCTACATaGCCCTCTCCTCATATCCTTCAATCTTTACCCAGAAAGCATCAT | + |
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Preference number: 5 (lower is better) Translates to: LAFPLPRMLFDQTAT*PSPHILQSLPRKHH Trigger: ATGATGCTTTCTGGGTAAAGATTGAAGGATATGAGGAGAGGGTCATGTAGCTGTTTGATCGAAGAGCATTCTTGGCAGAGGAAATGCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445083.2 |
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| CDS TCA 90 bp | GCAGTCTTCTCTAACATACTGCCACCAAGTGAGGGCCTGAGTGAATaGCAAGCTTTGATTCCTGTAGAACATTTTATCTCTCCTAGTGTA | + |
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Preference number: 5 (lower is better) Translates to: AVFSNILPPSEGLSE*QALIPVEHFISPSV Trigger: TACACTAGGAGAGATAAAATGTTCTACAGGAATCAAAGCTTGTCATTCACTCAGGCCCTCACTTGGTGGCAGTATGTTAGAGAAGACTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445083.2 |
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| CDS GCA 90 bp | CAGTACAGGTTTTTGTCTGTTGTAACAGTGTCTGGAGGGATTCAATaGTTAGTGGATGGCAGAGAACATTCTAGTAGTTATCCCAGATGC | + |
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Preference number: 5 (lower is better) Translates to: QYRFLSVVTVSGGIQ*LVDGREHSSSYPRC Trigger: GCATCTGGGATAACTACTAGAATGTTCTCTGCCATCCACTAAGCATTGAATCCCTCCAGACACTGTTACAACAGACAAAAACCTGTACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000445083.2 ENST00000669479.1 |
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| CDS TCA 90 bp | CCTTCAATCTTTACCCAGAAAGCATCATTTCAGTCATGTCTTCCCTaGTCATTCTACTTACAATCCAGCACTTCCTGGTTCCCCTTATTC | + |
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Preference number: 5 (lower is better) Translates to: PSIFTQKASFQSCLP*SFYLQSSTSWFPLF Trigger: GAATAAGGGGAACCAGGAAGTGCTGGATTGTAAGTAGAATGATCAGGGAAGACATGACTGAAATGATGCTTTCTGGGTAAAGATTGAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445083.2 |
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| CDS TCA 90 bp | ATTAAGCATGATGACTTTAAGGAAGGTATGAATATCATTCATGAATaGGGGGATTGGCCAGGAGTGTGTAAATGGCACCCACCAATGAGG | + |
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Preference number: 5 (lower is better) Translates to: IKHDDFKEGMNIIHE*GDWPGVCKWHPPMR Trigger: CCTCATTGGTGGGTGCCATTTACACACTCCTGGCCAATCCCCTCATTCATGAATGATATTCATACCTTCCTTAAAGTCATCATGCTTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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| CDS GCA 90 bp | GAATTTGAAAGTGAGACTGTTGTAACAGTGTCTGGAGGGATTCAATaGTTAGTGGATGGCAGAGAACATTCTAGTAGTTATCCCAGATGC | + |
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Preference number: 5 (lower is better) Translates to: EFESETVVTVSGGIQ*LVDGREHSSSYPRC Trigger: GCATCTGGGATAACTACTAGAATGTTCTCTGCCATCCACTAAGCATTGAATCCCTCCAGACACTGTTACAACAGTCTCACTTTCAAATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666270.1 |
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| CDS CCA 90 bp | GCTTTGATTCCTGTAGAACATTTTATCTCTCCTCCTCTGAGTCACTaGCGTGTCTTCCCTGAAGACTTGCAATCACAACCTAATGAATAT | + |
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Preference number: 5 (lower is better) Translates to: ALIPVEHFISPPLSH*RVFPEDLQSQPNEY Trigger: ATATTCATTAGGTTGTGATTGCAAGTCTTCAGGGAAGACACGCCAGTGACTCAGAGGAGGAGAGATAAAATGTTCTACAGGAATCAAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669479.1 |
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| CDS CCA 72 bp | CTGGAGACTACCTTCCTGTTGGCCTCCAGAGCACTCTaGCCTCGTTTTCTTCACATCCTTGGAGCCTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: LETTFLLASRAL*PRFLHILGAFP Trigger: AGGAAAGGCTCCAAGGATGTGAAGAAAACGAGGCCAGAGTGCTCTGGAGGCCAACAGGAAGGTAGTCTCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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| CDS CCA 72 bp | ACGTCACTTGCACAATTCTGGAGACTACCTTCCTGTTaGCCTCCAGAGCACTCTGGCCTCGTTTTCTTCACA | + |
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Preference number: 6 (lower is better) Translates to: TSLAQFWRLPSC*PPEHSGLVFFT Trigger: TGTGAAGAAAACGAGGCCAGAGTGCTCTGGAGGCCAACAGGAAGGTAGTCTCCAGAATTGTGCAAGTGACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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| CDS TCA 72 bp | GGGATTGGCCAGGAGTGTGTAAATGGCACCCACCAATaGGGAGGTGGAAGACTGCATACCTTCTATTATGCA | + |
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Preference number: 6 (lower is better) Translates to: GIGQECVNGTHQ*GGGRLHTFYYA Trigger: TGCATAATAGAAGGTATGCAGTCTTCCACCTCCTCATTGGTGGGTGCCATTTACACACTCCTGGCCAATCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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| CDS GCA 72 bp | AGTCCTGCCATAGAGACTTTGGCCTGGCATTTCCTCTaGCAAGAATGCTCTTCGATCAAACAGCTACATGAC | + |
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Preference number: 6 (lower is better) Translates to: SPAIETLAWHFL*QECSSIKQLHD Trigger: GTCATGTAGCTGTTTGATCGAAGAGCATTCTTGGCAGAGGAAATGCCAGGCCAAAGTCTCTATGGCAGGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445083.2 |
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| CDS CAA 90 bp | CTCCCACAGCCGAATGTTGGGCTTTTCCAGAGATTTGCCACAGCTTaGTTGTCAGTAGCCCAGTACAGGTTTTTGTCTGTTGTAACAGTG | + |
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Preference number: 6 (lower is better) Translates to: LPQPNVGLFQRFATA*LSVAQYRFLSVVTV Trigger: CACTGTTACAACAGACAAAAACCTGTACTGGGCTACTGACAACAAAGCTGTGGCAAATCTCTGGAAAAGCCCAACATTCGGCTGTGGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000445083.2 ENST00000669479.1 |
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| CDS CAA 90 bp | CTCCCACAGCCGAATGTTGGGCTTTTCCAGAGATTTGCCACAGCTTaGTTGTCAGTAGCCCAGTACAGGTTTTTGTCTTTGCAGTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: LPQPNVGLFQRFATA*LSVAQYRFLSLQCK Trigger: TTTGCACTGCAAAGACAAAAACCTGTACTGGGCTACTGACAACAAAGCTGTGGCAAATCTCTGGAAAAGCCCAACATTCGGCTGTGGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666270.1 |
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| CDS CAA 90 bp | CCACAGCCGAATGTTGGGCTTTTCCAGAGATTTGCCACAGCTTTGTaGTCAGTAGCCCAGTACAGGTTTTTGTCTGTTGTAACAGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: PQPNVGLFQRFATAL*SVAQYRFLSVVTVS Trigger: AGACACTGTTACAACAGACAAAAACCTGTACTGGGCTACTGACAACAAAGCTGTGGCAAATCTCTGGAAAAGCCCAACATTCGGCTGTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000445083.2 ENST00000669479.1 |
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| CDS CAA 90 bp | TCCTGTTGGCCTCCAGAGCACTCTGGCCTCGTTTTCTTCACATCCTaGGAGCCTTTCCTGCTCACTCTATTTTGGATAATTCTCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: SCWPPEHSGLVFFTS*EPFLLTLFWIILFF Trigger: AAAGAAGAGAATTATCCAAAATAGAGTGAGCAGGAAAGGCTCCAAGGATGTGAAGAAAACGAGGCCAGAGTGCTCTGGAGGCCAACAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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| CDS CAA 72 bp | GCCACAGCTTTGTTGTCAGTAGCCCAGTACAGGTTTTaGTCTGTTGTAACAGTGTCTGGAGGGATTCAATGC | + |
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Preference number: 6 (lower is better) Translates to: ATALLSVAQYRF*SVVTVSGGIQC Trigger: GCATTGAATCCCTCCAGACACTGTTACAACAGACAAAAACCTGTACTGGGCTACTGACAACAAAGCTGTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000445083.2 ENST00000669479.1 |
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| CDS CAA 72 bp | CCTCCAGAGCACTCTGGCCTCGTTTTCTTCACATCCTaGGAGCCTTTCCTGCTCACTCTATTTTGGATAATT | + |
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Preference number: 6 (lower is better) Translates to: PPEHSGLVFFTS*EPFLLTLFWII Trigger: AATTATCCAAAATAGAGTGAGCAGGAAAGGCTCCAAGGATGTGAAGAAAACGAGGCCAGAGTGCTCTGGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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| CDS CAA 72 bp | CCTCCTCTGAGTCACTGGCGTGTCTTCCCTGAAGACTaGCAATCACAACCTAATGAATATCCCTCCTTCTAT | + |
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Preference number: 6 (lower is better) Translates to: PPLSHWRVFPED*QSQPNEYPSFY Trigger: ATAGAAGGAGGGATATTCATTAGGTTGTGATTGCAAGTCTTCAGGGAAGACACGCCAGTGACTCAGAGGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669479.1 |
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| CDS CCA 72 bp | AGCCCAGTACAGGTTTTTGTCTGTTGTAACAGTGTCTaGAGGGATTCAATGCTTAGTGGATGGCAGAGAACA | + |
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Preference number: 6 (lower is better) Translates to: SPVQVFVCCNSV*RDSMLSGWQRT Trigger: TGTTCTCTGCCATCCACTAAGCATTGAATCCCTCCAGACACTGTTACAACAGACAAAAACCTGTACTGGGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000445083.2 ENST00000669479.1 |
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| CDS CAA 72 bp | CCGAATGTTGGGCTTTTCCAGAGATTTGCCACAGCTTaGTTGTCAGTAGCCCAGTACAGGTTTTTGTCTGTT | + |
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Preference number: 6 (lower is better) Translates to: PNVGLFQRFATA*LSVAQYRFLSV Trigger: AACAGACAAAAACCTGTACTGGGCTACTGACAACAAAGCTGTGGCAAATCTCTGGAAAAGCCCAACATTCGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000445083.2 ENST00000669479.1 |
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| CDS TCA 72 bp | GATGACTTTAAGGAAGGTATGAATATCATTCATGAATaGGGGGATTGGCCAGGAGTGTGTAAATGGCACCCA | + |
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Preference number: 6 (lower is better) Translates to: DDFKEGMNIIHE*GDWPGVCKWHP Trigger: TGGGTGCCATTTACACACTCCTGGCCAATCCCCTCATTCATGAATGATATTCATACCTTCCTTAAAGTCATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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| CDS CAA 72 bp | AATGTTGGGCTTTTCCAGAGATTTGCCACAGCTTTGTaGTCAGTAGCCCAGTACAGGTTTTTGTCTGTTGTA | + |
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Preference number: 6 (lower is better) Translates to: NVGLFQRFATAL*SVAQYRFLSVV Trigger: TACAACAGACAAAAACCTGTACTGGGCTACTGACAACAAAGCTGTGGCAAATCTCTGGAAAAGCCCAACATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000445083.2 ENST00000669479.1 |
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| CDS TCA 72 bp | TCTAACATACTGCCACCAAGTGAGGGCCTGAGTGAATaGCAAGCTTTGATTCCTGTAGAACATTTTATCTCT | + |
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Preference number: 6 (lower is better) Translates to: SNILPPSEGLSE*QALIPVEHFIS Trigger: AGAGATAAAATGTTCTACAGGAATCAAAGCTTGTCATTCACTCAGGCCCTCACTTGGTGGCAGTATGTTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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| CDS GCA 72 bp | AGTGAGACTGTTGTAACAGTGTCTGGAGGGATTCAATaGTTAGTGGATGGCAGAGAACATTCTAGTAGTTAT | + |
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Preference number: 6 (lower is better) Translates to: SETVVTVSGGIQ*LVDGREHSSSY Trigger: ATAACTACTAGAATGTTCTCTGCCATCCACTAAGCATTGAATCCCTCCAGACACTGTTACAACAGTCTCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666270.1 |
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| CDS TCA 72 bp | GAGGAGGTGGAAGACTGCATACCTTCTATTATGCATTaGAATGGGATGTTACAAAGGGTTATAAAAGAGTGC | + |
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Preference number: 6 (lower is better) Translates to: EEVEDCIPSIMH*NGMLQRVIKEC Trigger: GCACTCTTTTATAACCCTTTGTAACATCCCATTTCAATGCATAATAGAAGGTATGCAGTCTTCCACCTCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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| CDS GCA 72 bp | TTTTTGTCTGTTGTAACAGTGTCTGGAGGGATTCAATaGTTAGTGGATGGCAGAGAACATTCTAGTAGTTAT | + |
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Preference number: 6 (lower is better) Translates to: FLSVVTVSGGIQ*LVDGREHSSSY Trigger: ATAACTACTAGAATGTTCTCTGCCATCCACTAAGCATTGAATCCCTCCAGACACTGTTACAACAGACAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000445083.2 ENST00000669479.1 |
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| CDS CCA 72 bp | GGTGGAAGACTGCATACCTTCTATTATGCATTGAAATaGGATGTTACAAAGGGTTATAAAAGAGTGCTGATT | + |
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Preference number: 6 (lower is better) Translates to: GGRLHTFYYALK*DVTKGYKRVLI Trigger: AATCAGCACTCTTTTATAACCCTTTGTAACATCCCATTTCAATGCATAATAGAAGGTATGCAGTCTTCCACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000445083.2 ENST00000666270.1 ENST00000669479.1 |
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