Pregenerated sensors for LINC01589 (Homo sapiens)
Ensembl gene IDs: ENSG00000238120Ensembl transcript IDs: ENST00000422971.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CACTTCCTTGTGACTTGGCTTCATCCGGACCGGATGACTTCTGGGTaGCAGCAACAGTTCCCCATTTCCATTCACGTTTCCCCACATCGT | + |
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Preference number: 5 (lower is better) Translates to: HFLVTWLHPDRMTSG*QQQFPISIHVSPHR Trigger: ACGATGTGGGGAAACGTGAATGGAAATGGGGAACTGTTGCTGGCACCCAGAAGTCATCCGGTCCGGATGAAGCCAAGTCACAAGGAAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422971.1 |
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| CDS GCA 90 bp | CAGCAACAGTTCCCCATTTCCATTCACGTTTCCCCACATCGTTCATaGCAAAGAGATGGGTGCCAAGAGGCCATCCGTCTTCATCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: QQQFPISIHVSPHRS*QRDGCQEAIRLHPG Trigger: TCCAGGATGAAGACGGATGGCCTCTTGGCACCCATCTCTTTGGCATGAACGATGTGGGGAAACGTGAATGGAAATGGGGAACTGTTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422971.1 |
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| CDS GCA 90 bp | ATTTCCATTCACGTTTCCCCACATCGTTCATGCCAAAGAGATGGGTaGCAAGAGGCCATCCGTCTTCATCCTGGACATAGAATGAGACGG | + |
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Preference number: 5 (lower is better) Translates to: ISIHVSPHRSCQRDG*QEAIRLHPGHRMRR Trigger: CCGTCTCATTCTATGTCCAGGATGAAGACGGATGGCCTCTTGGCACCCATCTCTTTGGCATGAACGATGTGGGGAAACGTGAATGGAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422971.1 |
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| CDS CCA 90 bp | TCAGAGGAATTTATGAAGAATAATTGGAGGCACTTCCTTGTGACTTaGCTTCATCCGGACCGGATGACTTCTGGGTGCCAGCAACAGTTC | + |
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Preference number: 5 (lower is better) Translates to: SEEFMKNNWRHFLVT*LHPDRMTSGCQQQF Trigger: GAACTGTTGCTGGCACCCAGAAGTCATCCGGTCCGGATGAAGCCAAGTCACAAGGAAGTGCCTCCAATTATTCTTCATAAATTCCTCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422971.1 |
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| CDS TCA 90 bp | ACAGAAGCTGAGGTGTGGCTGCATTCCATTTGGAGAATTCCACTGTaGTTCATGGTGTCAGCTGCGGGTTCAAGGTGTCACAATTTAATT | + |
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Preference number: 5 (lower is better) Translates to: TEAEVWLHSIWRIPL*FMVSAAGSRCHNLI Trigger: AATTAAATTGTGACACCTTGAACCCGCAGCTGACACCATGAATCACAGTGGAATTCTCCAAATGGAATGCAGCCACACCTCAGCTTCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422971.1 |
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| CDS GCA 72 bp | CACGTTTCCCCACATCGTTCATGCCAAAGAGATGGGTaGCAAGAGGCCATCCGTCTTCATCCTGGACATAGA | + |
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Preference number: 6 (lower is better) Translates to: HVSPHRSCQRDG*QEAIRLHPGHR Trigger: TCTATGTCCAGGATGAAGACGGATGGCCTCTTGGCACCCATCTCTTTGGCATGAACGATGTGGGGAAACGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422971.1 |
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| CDS CCA 72 bp | CATTCACGTTTCCCCACATCGTTCATGCCAAAGAGATaGGTGCCAAGAGGCCATCCGTCTTCATCCTGGACA | + |
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Preference number: 6 (lower is better) Translates to: HSRFPTSFMPKR*VPRGHPSSSWT Trigger: TGTCCAGGATGAAGACGGATGGCCTCTTGGCACCCATCTCTTTGGCATGAACGATGTGGGGAAACGTGAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422971.1 |
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| CDS GCA 72 bp | TTCCCCATTTCCATTCACGTTTCCCCACATCGTTCATaGCAAAGAGATGGGTGCCAAGAGGCCATCCGTCTT | + |
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Preference number: 6 (lower is better) Translates to: FPISIHVSPHRS*QRDGCQEAIRL Trigger: AAGACGGATGGCCTCTTGGCACCCATCTCTTTGGCATGAACGATGTGGGGAAACGTGAATGGAAATGGGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000422971.1 |
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| CDS CAA 72 bp | CATAGAATGAGACGGGAACTCACTCTTGAAGGACTTTaGAAGTCTCAGAGAAGAAACGGAGCCACCGTAGAC | + |
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Preference number: 6 (lower is better) Translates to: HRMRRELTLEGL*KSQRRNGATVD Trigger: GTCTACGGTGGCTCCGTTTCTTCTCTGAGACTTCAAAAGTCCTTCAAGAGTGAGTTCCCGTCTCATTCTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000422971.1 |
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| CDS CAA 90 bp | CATCCTGGACATAGAATGAGACGGGAACTCACTCTTGAAGGACTTTaGAAGTCTCAGAGAAGAAACGGAGCCACCGTAGACCTTTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: HPGHRMRRELTLEGL*KSQRRNGATVDLLK Trigger: TTTCAAAAGGTCTACGGTGGCTCCGTTTCTTCTCTGAGACTTCAAAAGTCCTTCAAGAGTGAGTTCCCGTCTCATTCTATGTCCAGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000422971.1 |
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