Pregenerated sensors for LINC01587 (Homo sapiens)
Ensembl gene IDs: ENSG00000082929Ensembl transcript IDs: ENST00000504943.1, ENST00000505296.1, ENST00000515342.4, ENST00000623565.3
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGTCGTGCGGTGAGGTACTGGCACGTTCCCACGGGGTTACCTGGGTaGGAAGGCATCTTGTCAAATCAAACTCAAGAGGAACCACTGGGA | + |
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Preference number: 5 (lower is better) Translates to: GRAVRYWHVPTGLPG*EGILSNQTQEEPLG Trigger: TCCCAGTGGTTCCTCTTGAGTTTGATTTGACAAGATGCCTTCCCACCCAGGTAACCCCGTGGGAACGTGCCAGTACCTCACCGCACGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000504943.1 ENST00000505296.1 ENST00000623565.3 |
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| CDS CCA 90 bp | GTGAGGTCGTGCGGTGAGGTACTGGCACGTTCCCACGGGGTTACCTaGGTGGGAAGGCATCTTGTCAAATCAAACTCAAGAGGAACCACT | + |
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Preference number: 5 (lower is better) Translates to: VRSCGEVLARSHGVT*VGRHLVKSNSRGTT Trigger: AGTGGTTCCTCTTGAGTTTGATTTGACAAGATGCCTTCCCACCCAGGTAACCCCGTGGGAACGTGCCAGTACCTCACCGCACGACCTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000504943.1 ENST00000505296.1 ENST00000623565.3 |
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| CDS CCA 90 bp | CTGGGTGGGAAGGCATCTTGTCAAATCAAACTCAAGAGGAACCACTaGGAGGATGAGGTTGTGGCTCTGCCCACCCTCTCTCTTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: LGGKASCQIKLKRNH*EDEVVALPTLSLLQ Trigger: CTGGAGAAGAGAGAGGGTGGGCAGAGCCACAACCTCATCCTCCCAGTGGTTCCTCTTGAGTTTGATTTGACAAGATGCCTTCCCACCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000504943.1 ENST00000505296.1 ENST00000623565.3 |
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| CDS CCA 90 bp | GAGCACCGGAGACAGTCACACTGGGGTTTGGGTCAAAGGTCCAGCTaGCAGCAAAGCATTCTGGCTCTGTTTTATCTGCAGTGTCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: EHRRQSHWGLGQRSS*QQSILALFYLQCLQ Trigger: CTGCAGACACTGCAGATAAAACAGAGCCAGAATGCTTTGCTGCCAGCTGGACCTTTGACCCAAACCCCAGTGTGACTGTCTCCGGTGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000505296.1 ENST00000515342.4 ENST00000623565.3 |
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| CDS CCA 90 bp | TTCATTGATGCACTGCAGTTGAGTGAGCACCGGAGACAGTCACACTaGGGTTTGGGTCAAAGGTCCAGCTGGCAGCAAAGCATTCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: FIDALQLSEHRRQSH*GLGQRSSWQQSILA Trigger: AGCCAGAATGCTTTGCTGCCAGCTGGACCTTTGACCCAAACCCCAGTGTGACTGTCTCCGGTGCTCACTCAACTGCAGTGCATCAATGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000505296.1 ENST00000515342.4 ENST00000623565.3 |
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| CDS GCA 90 bp | CCAGCTGGCAGCAAAGCATTCTGGCTCTGTTTTATCTGCAGTGTCTaGAGTTCCAAGGTCAGCTCTCCTGGATTTCCGTCCATAGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: PAGSKAFWLCFICSV*SSKVSSPGFPSIVS Trigger: GGACACTATGGACGGAAATCCAGGAGAGCTGACCTTGGAACTGCAGACACTGCAGATAAAACAGAGCCAGAATGCTTTGCTGCCAGCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000515342.4 ENST00000623565.3 |
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| CDS CCA 90 bp | CACACTGGGGTTTGGGTCAAAGGTCCAGCTGGCAGCAAAGCATTCTaGCTCTGTTTTATCTGCAGTGTCTGCAGTTCCAAGGTCAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: HTGVWVKGPAGSKAF*LCFICSVCSSKVSS Trigger: AGAGCTGACCTTGGAACTGCAGACACTGCAGATAAAACAGAGCCAGAATGCTTTGCTGCCAGCTGGACCTTTGACCCAAACCCCAGTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000515342.4 ENST00000623565.3 |
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| CDS TCA 90 bp | GAAGGCAAGGTCAGCTCTCCTGGATTTCCGTCCATAGTGTCCAATTaGAAGAAGAAGGTAAAAATTTTTGCGTGTTCCTTCCTTCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: EGKVSSPGFPSIVSN*KKKVKIFACSFLPK Trigger: TTTGGGAAGGAAGGAACACGCAAAAATTTTTACCTTCTTCTTTCAATTGGACACTATGGACGGAAATCCAGGAGAGCTGACCTTGCCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000505296.1 |
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| CDS CCA 90 bp | GCTCTGTTTTATCTGCAGTGTCTGCAGTTCCAAGGTCAGCTCTCCTaGATTTCCGTCCATAGTGTCCAATTGAAAGAAGAAGGTAAAAAT | + |
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Preference number: 5 (lower is better) Translates to: ALFYLQCLQFQGQLS*ISVHSVQLKEEGKN Trigger: ATTTTTACCTTCTTCTTTCAATTGGACACTATGGACGGAAATCCAGGAGAGCTGACCTTGGAACTGCAGACACTGCAGATAAAACAGAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000515342.4 ENST00000623565.3 |
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| CDS TCA 90 bp | AGTTCCAAGGTCAGCTCTCCTGGATTTCCGTCCATAGTGTCCAATTaGAAGAAGAAGGTAAAAATTTTTGCGTGTTCCTTCCTTCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: SSKVSSPGFPSIVSN*KKKVKIFACSFLPK Trigger: TTTGGGAAGGAAGGAACACGCAAAAATTTTTACCTTCTTCTTTCAATTGGACACTATGGACGGAAATCCAGGAGAGCTGACCTTGGAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000515342.4 ENST00000623565.3 |
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| CDS GCA 90 bp | GGTAAAAATTTTTGCGTGTTCCTTCCTTCCCAAATTCAACTGTCCTaGATCAGACTCTGCTTCATCTTCTCTGAAGTCATAAGAGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: GKNFCVFLPSQIQLS*IRLCFIFSEVIRAW Trigger: CCAAGCTCTTATGACTTCAGAGAAGATGAAGCAGAGTCTGATGCAGGACAGTTGAATTTGGGAAGGAAGGAACACGCAAAAATTTTTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000515342.4 |
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| CDS GCA 90 bp | ATTTCCGTCCATAGTGTCCAATTGAAAGAAGAAGGTAAAAATTTTTaGGTGTTCCTTCCTTCCCAAATTCAACTGTCCTGCATCAGACTC | + |
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Preference number: 5 (lower is better) Translates to: ISVHSVQLKEEGKNF*VFLPSQIQLSCIRL Trigger: GAGTCTGATGCAGGACAGTTGAATTTGGGAAGGAAGGAACACGCAAAAATTTTTACCTTCTTCTTTCAATTGGACACTATGGACGGAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000515342.4 |
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| CDS GCA 72 bp | GCAGCCTGGATTTGTTGTGAGGACTCAGTGAGGTCGTaGGGTGAGGTACTGGCACGTTCCCACGGGGTTACC | + |
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Preference number: 6 (lower is better) Translates to: AAWICCEDSVRS*GEVLARSHGVT Trigger: GGTAACCCCGTGGGAACGTGCCAGTACCTCACCGCACGACCTCACTGAGTCCTCACAACAAATCCAGGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000504943.1 ENST00000505296.1 ENST00000623565.3 |
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| CDS CCA 72 bp | GCACTGCAGTTGAGTGAGCACCGGAGACAGTCACACTaGGGTTTGGGTCAAAGGTCCAGCTGGCAGCAAAGC | + |
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Preference number: 6 (lower is better) Translates to: ALQLSEHRRQSH*GLGQRSSWQQS Trigger: GCTTTGCTGCCAGCTGGACCTTTGACCCAAACCCCAGTGTGACTGTCTCCGGTGCTCACTCAACTGCAGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000505296.1 ENST00000515342.4 ENST00000623565.3 |
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| CDS CAA 72 bp | CTGGGAGCAGGCTCTGCGTGTTTGTTCTTAGGAGACTaGGCACAAAGGCGAAGGTTGGCTCTCCCCCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: LGAGSACLFLGD*AQRRRLALPLP Trigger: TGGGAGGGGGAGAGCCAACCTTCGCCTTTGTGCCAAGTCTCCTAAGAACAAACACGCAGAGCCTGCTCCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504943.1 |
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| CDS CCA 72 bp | GCTCTTTGGTTTCTATCAGCCTGGGGCTCAAGCTGTTaGGCTTGTGCCCAGCAGTTAGCCAGCTCTCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: ALWFLSAWGSSC*ACAQQLASSPG Trigger: TCCTGGAGAGCTGGCTAACTGCTGGGCACAAGCCCAACAGCTTGAGCCCCAGGCTGATAGAAACCAAAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515342.4 |
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| CDS CAA 72 bp | TTGGTTTCTATCAGCCTGGGGCTCAAGCTGTTGGGCTaGTGCCCAGCAGTTAGCCAGCTCTCCAGGATTCTG | + |
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Preference number: 6 (lower is better) Translates to: LVSISLGLKLLG*CPAVSQLSRIL Trigger: CAGAATCCTGGAGAGCTGGCTAACTGCTGGGCACAAGCCCAACAGCTTGAGCCCCAGGCTGATAGAAACCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515342.4 |
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| CDS TCA 72 bp | AAAAATCTGCAGCCTGGATTTGTTGTGAGGACTCAGTaGGGTCGTGCGGTGAGGTACTGGCACGTTCCCACG | + |
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Preference number: 6 (lower is better) Translates to: KNLQPGFVVRTQ*GRAVRYWHVPT Trigger: CGTGGGAACGTGCCAGTACCTCACCGCACGACCTCACTGAGTCCTCACAACAAATCCAGGCTGCAGATTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000504943.1 ENST00000505296.1 ENST00000623565.3 |
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| CDS GCA 72 bp | GTTTCTATCAGCCTGGGGCTCAAGCTGTTGGGCTTGTaGCCAGCAGTTAGCCAGCTCTCCAGGATTCTGAAA | + |
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Preference number: 6 (lower is better) Translates to: VSISLGLKLLGL*PAVSQLSRILK Trigger: TTTCAGAATCCTGGAGAGCTGGCTAACTGCTGGGCACAAGCCCAACAGCTTGAGCCCCAGGCTGATAGAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515342.4 |
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| CDS CCA 72 bp | TGCGGTGAGGTACTGGCACGTTCCCACGGGGTTACCTaGGTGGGAAGGCATCTTGTCAAATCAAACTCAAGA | + |
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Preference number: 6 (lower is better) Translates to: CGEVLARSHGVT*VGRHLVKSNSR Trigger: TCTTGAGTTTGATTTGACAAGATGCCTTCCCACCCAGGTAACCCCGTGGGAACGTGCCAGTACCTCACCGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000504943.1 ENST00000505296.1 ENST00000623565.3 |
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| CDS CAA 72 bp | CACGTTCCCACGGGGTTACCTGGGTGGGAAGGCATCTaGTCAAATCAAACTCAAGAGGAACCACTGGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: HVPTGLPGWEGI*SNQTQEEPLGG Trigger: TCCTCCCAGTGGTTCCTCTTGAGTTTGATTTGACAAGATGCCTTCCCACCCAGGTAACCCCGTGGGAACGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000504943.1 ENST00000505296.1 ENST00000623565.3 |
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| CDS CAA 90 bp | GGCTCTGCGTGTTTGTTCTTAGGAGACTTGGCACAAAGGCGAAGGTaGGCTCTCCCCCTCCCAATAAATGTGGACACACTTTCCGTAGGC | + |
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Preference number: 6 (lower is better) Translates to: GSACLFLGDLAQRRR*ALPLPINVDTLSVG Trigger: GCCTACGGAAAGTGTGTCCACATTTATTGGGAGGGGGAGAGCCAACCTTCGCCTTTGTGCCAAGTCTCCTAAGAACAAACACGCAGAGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504943.1 |
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| CDS CAA 90 bp | TTTGTCCATCTGGGAGCAGGCTCTGCGTGTTTGTTCTTAGGAGACTaGGCACAAAGGCGAAGGTTGGCTCTCCCCCTCCCAATAAATGTG | + |
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Preference number: 6 (lower is better) Translates to: FVHLGAGSACLFLGD*AQRRRLALPLPINV Trigger: CACATTTATTGGGAGGGGGAGAGCCAACCTTCGCCTTTGTGCCAAGTCTCCTAAGAACAAACACGCAGAGCCTGCTCCCAGATGGACAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504943.1 |
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| CDS CAA 72 bp | TTTTCCTTTGTCCATCTGGGAGCAGGCTCTGCGTGTTaGTTCTTAGGAGACTTGGCACAAAGGCGAAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: FSFVHLGAGSAC*FLGDLAQRRRL Trigger: CAACCTTCGCCTTTGTGCCAAGTCTCCTAAGAACAAACACGCAGAGCCTGCTCCCAGATGGACAAAGGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504943.1 |
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| CDS CAA 72 bp | TGTTTGTTCTTAGGAGACTTGGCACAAAGGCGAAGGTaGGCTCTCCCCCTCCCAATAAATGTGGACACACTT | + |
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Preference number: 6 (lower is better) Translates to: CLFLGDLAQRRR*ALPLPINVDTL Trigger: AAGTGTGTCCACATTTATTGGGAGGGGGAGAGCCAACCTTCGCCTTTGTGCCAAGTCTCCTAAGAACAAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000504943.1 |
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| CDS CCA 72 bp | CTGTATGTAGAGGGAAGAAGGCAAGGTCAGCTCTCCTaGATTTCCGTCCATAGTGTCCAATTGAAAGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: LYVEGRRQGQLS*ISVHSVQLKEE Trigger: TTCTTCTTTCAATTGGACACTATGGACGGAAATCCAGGAGAGCTGACCTTGCCTTCTTCCCTCTACATACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505296.1 |
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| CDS CCA 72 bp | TATCTGCAGTGTCTGCAGTTCCAAGGTCAGCTCTCCTaGATTTCCGTCCATAGTGTCCAATTGAAAGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: YLQCLQFQGQLS*ISVHSVQLKEE Trigger: TTCTTCTTTCAATTGGACACTATGGACGGAAATCCAGGAGAGCTGACCTTGGAACTGCAGACACTGCAGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000515342.4 ENST00000623565.3 |
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| CDS GCA 72 bp | CTTCCTTCCCAAATTCAACTGTCCTGCATCAGACTCTaGTTCATCTTCTCTGAAGTCATAAGAGCTTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: LPSQIQLSCIRL*FIFSEVIRAWL Trigger: AAGCCAAGCTCTTATGACTTCAGAGAAGATGAAGCAGAGTCTGATGCAGGACAGTTGAATTTGGGAAGGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515342.4 |
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| CDS TCA 72 bp | TTCTCTGAAGTCATAAGAGCTTGGCTTTGTAATCAGTaGAAATGTGCTCTTTGGTTTCTATCAGCCTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: FSEVIRAWLCNQ*KCALWFLSAWG Trigger: GCCCCAGGCTGATAGAAACCAAAGAGCACATTTTCACTGATTACAAAGCCAAGCTCTTATGACTTCAGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515342.4 |
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| CDS GCA 72 bp | TTTTGCGTGTTCCTTCCTTCCCAAATTCAACTGTCCTaGATCAGACTCTGCTTCATCTTCTCTGAAGTCATA | + |
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Preference number: 6 (lower is better) Translates to: FCVFLPSQIQLS*IRLCFIFSEVI Trigger: TATGACTTCAGAGAAGATGAAGCAGAGTCTGATGCAGGACAGTTGAATTTGGGAAGGAAGGAACACGCAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515342.4 |
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| CDS TCA 72 bp | GTCAGCTCTCCTGGATTTCCGTCCATAGTGTCCAATTaGAAGAAGAAGGTAAAAATTTTTGCGTGTTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: VSSPGFPSIVSN*KKKVKIFACSF Trigger: GAAGGAACACGCAAAAATTTTTACCTTCTTCTTTCAATTGGACACTATGGACGGAAATCCAGGAGAGCTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000505296.1 ENST00000515342.4 ENST00000623565.3 |
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