Pregenerated sensors for LINC01583 (Homo sapiens)
Ensembl gene IDs: ENSG00000259518Ensembl transcript IDs: ENST00000557838.1, ENST00000558082.1, ENST00000559788.1, ENST00000654578.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CATGGCCTGGGTGAGGAAGAGCACTGGCCAAGACCTGCAGCTGCCTaGGCTGTCCCACTCTGTCGCAATTCTGGTACCCAGAGGAGAAAA | + |
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Preference number: 5 (lower is better) Translates to: HGLGEEEHWPRPAAA*AVPLCRNSGTQRRK Trigger: TTTTCTCCTCTGGGTACCAGAATTGCGACAGAGTGGGACAGCTCAGGCAGCTGCAGGTCTTGGCCAGTGCTCTTCCTCACCCAGGCCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000557838.1 ENST00000558082.1 ENST00000559788.1 ENST00000654578.1 |
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| CDS CCA 90 bp | TTCTGGTATCACTGTGGGGTGTGGGAGTCCGGAGTCAGGCAGGCTTaGGACCCAGTACAGGCTTTGTCTCACCAGCTGTGTACCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: FWYHCGVWESGVRQA*DPVQALSHQLCTFW Trigger: CCAGAAGGTACACAGCTGGTGAGACAAAGCCTGTACTGGGTCCCAAGCCTGCCTGACTCCGGACTCCCACACCCCACAGTGATACCAGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS TCA 90 bp | GCTGGAATCAGGACAGCAGCTGCAGCATGTTTCCCATTTTCAGGGTaGTTCTGGTATCACTGTGGGGTGTGGGAGTCCGGAGTCAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: AGIRTAAAACFPFSG*FWYHCGVWESGVRQ Trigger: CTGCCTGACTCCGGACTCCCACACCCCACAGTGATACCAGAATCACCCTGAAAATGGGAAACATGCTGCAGCTGCTGTCCTGATTCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS CCA 90 bp | AGCTGCAGCATGTTTCCCATTTTCAGGGTGATTCTGGTATCACTGTaGGGTGTGGGAGTCCGGAGTCAGGCAGGCTTGGGACCCAGTACA | + |
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Preference number: 5 (lower is better) Translates to: SCSMFPIFRVILVSL*GVGVRSQAGLGPST Trigger: TGTACTGGGTCCCAAGCCTGCCTGACTCCGGACTCCCACACCCCACAGTGATACCAGAATCACCCTGAAAATGGGAAACATGCTGCAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS CCA 90 bp | AGCTTCATTGGCTTCCTGGTCAATCCAGCTCTCCTGGTCAGAGGCTaGAATCAGGACAGCAGCTGCAGCATGTTTCCCATTTTCAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: SFIGFLVNPALLVRG*NQDSSCSMFPIFRV Trigger: CACCCTGAAAATGGGAAACATGCTGCAGCTGCTGTCCTGATTCCAGCCTCTGACCAGGAGAGCTGGATTGACCAGGAAGCCAATGAAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS GCA 90 bp | GTCAATCCAGCTCTCCTGGTCAGAGGCTGGAATCAGGACAGCAGCTaGAGCATGTTTCCCATTTTCAGGGTGATTCTGGTATCACTGTGG | + |
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Preference number: 5 (lower is better) Translates to: VNPALLVRGWNQDSS*SMFPIFRVILVSLW Trigger: CCACAGTGATACCAGAATCACCCTGAAAATGGGAAACATGCTGCAGCTGCTGTCCTGATTCCAGCCTCTGACCAGGAGAGCTGGATTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS CCA 90 bp | ACTGGATGTTCAAAAGTCAGGCACCAGAGATCATTTGAGCTGCTCTaGAACATCTCCCTTAATCCCCAAAGGCCAGTCCATCTGCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: TGCSKVRHQRSFELL*NISLNPQRPVHLPG Trigger: CCCAGGCAGATGGACTGGCCTTTGGGGATTAAGGGAGATGTTCCAGAGCAGCTCAAATGATCTCTGGTGCCTGACTTTTGAACATCCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654578.1 |
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| CDS GCA 90 bp | TATAAACTGGATGTTCAAAAGTCAGGCACCAGAGATCATTTGAGCTaGTCTGGAACATCTCCCTTAATCCCCAAAGGCCAGTCCATCTGC | + |
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Preference number: 5 (lower is better) Translates to: YKLDVQKSGTRDHLS*SGTSPLIPKGQSIC Trigger: GCAGATGGACTGGCCTTTGGGGATTAAGGGAGATGTTCCAGAGCAGCTCAAATGATCTCTGGTGCCTGACTTTTGAACATCCAGTTTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654578.1 |
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| CDS CCA 90 bp | AATCAGAGAGTGGGCTCTCACCAGACACTGAATCTGCTGGTGTCTTaGTCTTGGACTTTCCAGCCTTTAGAACTAGTTCCAAAAAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: NQRVGSHQTLNLLVS*SWTFQPLELVPKRV Trigger: GACTCTTTTTGGAACTAGTTCTAAAGGCTGGAAAGTCCAAGACCAAGACACCAGCAGATTCAGTGTCTGGTGAGAGCCCACTCTCTGATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000558082.1 |
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| CDS TCA 90 bp | CCACAACACGCATGTGTAACAATGTCAGTGCTTCATTGGACAGTCTaGACTCAGTGGGGTGTAGACATGAAACTGCCTTTAAAAAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: PQHACVTMSVLHWTV*TQWGVDMKLPLKSP Trigger: AGGGCTTTTTAAAGGCAGTTTCATGTCTACACCCCACTGAGTTCAGACTGTCCAATGAAGCACTGACATTGTTACACATGCGTGTTGTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000559788.1 |
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| CDS GCA 90 bp | TTTCACAAAGTGTCATTTAACTTTTTACCACACACTTGGGAAAAGTaGACTCAACTGGGTTGGAAAGTTCCTTTGCTTGTCTTAAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: FHKVSFNFLPHTWEK*TQLGWKVPLLVLRG Trigger: TCCTCTTAAGACAAGCAAAGGAACTTTCCAACCCAGTTGAGTGCACTTTTCCCAAGTGTGTGGTAAAAAGTTAAATGACACTTTGTGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS CCA 72 bp | CACTGTGGGGTGTGGGAGTCCGGAGTCAGGCAGGCTTaGGACCCAGTACAGGCTTTGTCTCACCAGCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: HCGVWESGVRQA*DPVQALSHQLC Trigger: ACACAGCTGGTGAGACAAAGCCTGTACTGGGTCCCAAGCCTGCCTGACTCCGGACTCCCACACCCCACAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS CAA 72 bp | TCACTGTGGGGTGTGGGAGTCCGGAGTCAGGCAGGCTaGGGACCCAGTACAGGCTTTGTCTCACCAGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: SLWGVGVRSQAG*GPSTGFVSPAV Trigger: CACAGCTGGTGAGACAAAGCCTGTACTGGGTCCCAAGCCTGCCTGACTCCGGACTCCCACACCCCACAGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS TCA 72 bp | TTCTACGGTGACTGTGTTGATGCTGCATGGCCTGGGTaGGGAAGAGCACTGGCCAAGACCTGCAGCTGCCTG | + |
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Preference number: 6 (lower is better) Translates to: FYGDCVDAAWPG*GRALAKTCSCL Trigger: CAGGCAGCTGCAGGTCTTGGCCAGTGCTCTTCCTCACCCAGGCCATGCAGCATCAACACAGTCACCGTAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000557838.1 ENST00000558082.1 ENST00000559788.1 ENST00000654578.1 |
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| CDS CAA 90 bp | ATTCTGGTATCACTGTGGGGTGTGGGAGTCCGGAGTCAGGCAGGCTaGGGACCCAGTACAGGCTTTGTCTCACCAGCTGTGTACCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: ILVSLWGVGVRSQAG*GPSTGFVSPAVYLL Trigger: CAGAAGGTACACAGCTGGTGAGACAAAGCCTGTACTGGGTCCCAAGCCTGCCTGACTCCGGACTCCCACACCCCACAGTGATACCAGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS TCA 72 bp | GAAGGTTCGCTTGAGCCCAGGAGGTCCAGGCTGCATTaGGCTGAAATCTTCACTCTAGCCTGGGAGACACTC | + |
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Preference number: 6 (lower is better) Translates to: EGSLEPRRSRLH*AEIFTLAWETL Trigger: GAGTGTCTCCCAGGCTAGAGTGAAGATTTCAGCTCAATGCAGCCTGGACCTCCTGGGCTCAAGCGAACCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000558082.1 |
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| CDS CAA 72 bp | TCCGGAGTCAGGCAGGCTTGGGACCCAGTACAGGCTTaGTCTCACCAGCTGTGTACCTTCTGGAAGGTTACT | + |
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Preference number: 6 (lower is better) Translates to: SGVRQAWDPVQA*SHQLCTFWKVT Trigger: AGTAACCTTCCAGAAGGTACACAGCTGGTGAGACAAAGCCTGTACTGGGTCCCAAGCCTGCCTGACTCCGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS CAA 90 bp | GTGTGGGAGTCCGGAGTCAGGCAGGCTTGGGACCCAGTACAGGCTTaGTCTCACCAGCTGTGTACCTTCTGGAAGGTTACTTCAATCCTT | + |
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Preference number: 6 (lower is better) Translates to: VWESGVRQAWDPVQA*SHQLCTFWKVTSIL Trigger: AAGGATTGAAGTAACCTTCCAGAAGGTACACAGCTGGTGAGACAAAGCCTGTACTGGGTCCCAAGCCTGCCTGACTCCGGACTCCCACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS CAA 90 bp | GAAAGTTCCTTTGCTTGTCTTAAGAGGAGTTCTACGGTGACTGTGTaGATGCTGCATGGCCTGGGTGAGGAAGAGCACTGGCCAAGACCT | + |
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Preference number: 6 (lower is better) Translates to: ESSFACLKRSSTVTV*MLHGLGEEEHWPRP Trigger: AGGTCTTGGCCAGTGCTCTTCCTCACCCAGGCCATGCAGCATCAACACAGTCACCGTAGAACTCCTCTTAAGACAAGCAAAGGAACTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000557838.1 ENST00000558082.1 ENST00000559788.1 ENST00000654578.1 |
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| CDS CCA 72 bp | CTTTTCGCTTACAGGAAGCACTTTGCAGCCTCTTTCTaGCATGTCGGAATCACCAGCGTCGCTACTCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: LFAYRKHFAASF*HVGITSVATLA Trigger: TGCAAGAGTAGCGACGCTGGTGATTCCGACATGCCAGAAAGAGGCTGCAAAGTGCTTCCTGTAAGCGAAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558082.1 |
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| CDS GCA 72 bp | GGTGTAGACATGAAACTGCCTTTAAAAAGCCCTCACTaGAGCTGGGCAGCACTTTTCAGTTCCTCGATGGCA | + |
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Preference number: 6 (lower is better) Translates to: GVDMKLPLKSPH*SWAALFSSSMA Trigger: TGCCATCGAGGAACTGAAAAGTGCTGCCCAGCTGCAGTGAGGGCTTTTTAAAGGCAGTTTCATGTCTACACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000559788.1 |
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| CDS CCA 72 bp | GACATGAAACTGCCTTTAAAAAGCCCTCACTGCAGCTaGGCAGCACTTTTCAGTTCCTCGATGGCATCTTGG | + |
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Preference number: 6 (lower is better) Translates to: DMKLPLKSPHCS*AALFSSSMASW Trigger: CCAAGATGCCATCGAGGAACTGAAAAGTGCTGCCCAGCTGCAGTGAGGGCTTTTTAAAGGCAGTTTCATGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000559788.1 |
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| CDS CAA 72 bp | CTCGATTCATGCTTAACCTTGGCCGGCTTAGATTCCTaGATCTTTGTGGGTCACACCTTCCTCTTGCCTACC | + |
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Preference number: 6 (lower is better) Translates to: LDSCLTLAGLDS*IFVGHTFLLPT Trigger: GGTAGGCAAGAGGAAGGTGTGACCCACAAAGATCAAGGAATCTAAGCCGGCCAAGGTTAAGCATGAATCGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000558082.1 ENST00000559788.1 ENST00000654578.1 |
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| CDS CAA 90 bp | GAGAGTGGGCTCTCACCAGACACTGAATCTGCTGGTGTCTTGGTCTaGGACTTTCCAGCCTTTAGAACTAGTTCCAAAAAGAGTCACACC | + |
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Preference number: 6 (lower is better) Translates to: ESGLSPDTESAGVLV*DFPAFRTSSKKSHT Trigger: GGTGTGACTCTTTTTGGAACTAGTTCTAAAGGCTGGAAAGTCCAAGACCAAGACACCAGCAGATTCAGTGTCTGGTGAGAGCCCACTCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000558082.1 |
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| CDS GCA 72 bp | GATGTTCAAAAGTCAGGCACCAGAGATCATTTGAGCTaGTCTGGAACATCTCCCTTAATCCCCAAAGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: DVQKSGTRDHLS*SGTSPLIPKGQ Trigger: CTGGCCTTTGGGGATTAAGGGAGATGTTCCAGAGCAGCTCAAATGATCTCTGGTGCCTGACTTTTGAACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654578.1 |
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| CDS CAA 72 bp | CACCAGCAGGGTTCTGGAGGCTATCTAGAGATGCTTTaGGAGCTTGTCCTTCTAAAACTCACGTCCTCTAAG | + |
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Preference number: 6 (lower is better) Translates to: HQQGSGGYLEML*ELVLLKLTSSK Trigger: CTTAGAGGACGTGAGTTTTAGAAGGACAAGCTCCAAAAGCATCTCTAGATAGCCTCCAGAACCCTGCTGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS CAA 90 bp | GAATCAGAGAGTGGGCTCTCACCAGACACTGAATCTGCTGGTGTCTaGGTCTTGGACTTTCCAGCCTTTAGAACTAGTTCCAAAAAGAGT | + |
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Preference number: 6 (lower is better) Translates to: ESESGLSPDTESAGV*VLDFPAFRTSSKKS Trigger: ACTCTTTTTGGAACTAGTTCTAAAGGCTGGAAAGTCCAAGACCAAGACACCAGCAGATTCAGTGTCTGGTGAGAGCCCACTCTCTGATTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000558082.1 |
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| CDS CAA 90 bp | CTTATTACATTGAGAACTTTCAGCTTTTCGCTTACAGGAAGCACTTaGCAGCCTCTTTCTGGCATGTCGGAATCACCAGCGTCGCTACTC | + |
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Preference number: 6 (lower is better) Translates to: LITLRTFSFSLTGST*QPLSGMSESPASLL Trigger: GAGTAGCGACGCTGGTGATTCCGACATGCCAGAAAGAGGCTGCAAAGTGCTTCCTGTAAGCGAAAAGCTGAAAGTTCTCAATGTAATAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558082.1 |
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| CDS TCA 72 bp | ACTTTGGGGCCATCGGGAAGTAAAATAAGGGTTGCTTaGACACAAGCACTGTGCCGCTATGACAGTCAATCT | + |
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Preference number: 6 (lower is better) Translates to: TLGPSGSKIRVA*TQALCRYDSQS Trigger: AGATTGACTGTCATAGCGGCACAGTGCTTGTGTTCAAGCAACCCTTATTTTACTTCCCGATGGCCCCAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000558082.1 |
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| CDS TCA 72 bp | AAATGGAACAAAATGTGGCCAGTTGGTGGATCTGGGTaGGGAACATATGAGAGCTCCTTGGACTCATCTTGG | + |
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Preference number: 6 (lower is better) Translates to: KWNKMWPVGGSG*GTYESSLDSSW Trigger: CCAAGATGAGTCCAAGGAGCTCTCATATGTTCCTCACCCAGATCCACCAACTGGCCACATTTTGTTCCATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558082.1 |
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| CDS CCA 72 bp | GAACTAGTTCCAAAAAGAGTCACACCAGCAGGGTTCTaGAGGCTATCTAGAGATGCTTTTGGAGCTTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: ELVPKRVTPAGF*RLSRDAFGACP Trigger: AGGACAAGCTCCAAAAGCATCTCTAGATAGCCTCCAGAACCCTGCTGGTGTGACTCTTTTTGGAACTAGTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000558082.1 |
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| CDS CCA 72 bp | TACCTAGTTCCAAAAAGAGTCACACCAGCAGGGTTCTaGAGGCTATCTAGAGATGCTTTTGGAGCTTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: YLVPKRVTPAGF*RLSRDAFGACP Trigger: AGGACAAGCTCCAAAAGCATCTCTAGATAGCCTCCAGAACCCTGCTGGTGTGACTCTTTTTGGAACTAGGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654578.1 |
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| CDS CAA 90 bp | CTCAAGTTGTCCACAACACGCATGTGTAACAATGTCAGTGCTTCATaGGACAGTCTGAACTCAGTGGGGTGTAGACATGAAACTGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: LKLSTTRMCNNVSAS*DSLNSVGCRHETAF Trigger: AAAGGCAGTTTCATGTCTACACCCCACTGAGTTCAGACTGTCCAATGAAGCACTGACATTGTTACACATGCGTGTTGTGGACAACTTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000559788.1 |
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| CDS CAA 90 bp | AAAGAGTCACACCAGCAGGGTTCTGGAGGCTATCTAGAGATGCTTTaGGAGCTTGTCCTTCTAAAACTCACGTCCTCTAAGGAGTTACTT | + |
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Preference number: 6 (lower is better) Translates to: KESHQQGSGGYLEML*ELVLLKLTSSKELL Trigger: AAGTAACTCCTTAGAGGACGTGAGTTTTAGAAGGACAAGCTCCAAAAGCATCTCTAGATAGCCTCCAGAACCCTGCTGGTGTGACTCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS CAA 72 bp | TCCACAACACGCATGTGTAACAATGTCAGTGCTTCATaGGACAGTCTGAACTCAGTGGGGTGTAGACATGAA | + |
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Preference number: 6 (lower is better) Translates to: STTRMCNNVSAS*DSLNSVGCRHE Trigger: TTCATGTCTACACCCCACTGAGTTCAGACTGTCCAATGAAGCACTGACATTGTTACACATGCGTGTTGTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000559788.1 |
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| CDS CAA 90 bp | TTTGTTTATAAACTGGATGTTCAAAAGTCAGGCACCAGAGATCATTaGAGCTGCTCTGGAACATCTCCCTTAATCCCCAAAGGCCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: FVYKLDVQKSGTRDH*SCSGTSPLIPKGQS Trigger: GGACTGGCCTTTGGGGATTAAGGGAGATGTTCCAGAGCAGCTCAAATGATCTCTGGTGCCTGACTTTTGAACATCCAGTTTATAAACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654578.1 |
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| CDS TCA 72 bp | GCATGTGTAACAATGTCAGTGCTTCATTGGACAGTCTaGACTCAGTGGGGTGTAGACATGAAACTGCCTTTA | + |
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Preference number: 6 (lower is better) Translates to: ACVTMSVLHWTV*TQWGVDMKLPL Trigger: TAAAGGCAGTTTCATGTCTACACCCCACTGAGTTCAGACTGTCCAATGAAGCACTGACATTGTTACACATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000559788.1 |
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| CDS CAA 72 bp | AAACTGGATGTTCAAAAGTCAGGCACCAGAGATCATTaGAGCTGCTCTGGAACATCTCCCTTAATCCCCAAA | + |
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Preference number: 6 (lower is better) Translates to: KLDVQKSGTRDH*SCSGTSPLIPK Trigger: TTTGGGGATTAAGGGAGATGTTCCAGAGCAGCTCAAATGATCTCTGGTGCCTGACTTTTGAACATCCAGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000654578.1 |
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| CDS CCA 72 bp | TTACCACACACTTGGGAAAAGTGCACTCAACTGGGTTaGAAAGTTCCTTTGCTTGTCTTAAGAGGAGTTCTA | + |
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Preference number: 6 (lower is better) Translates to: LPHTWEKCTQLG*KVPLLVLRGVL Trigger: TAGAACTCCTCTTAAGACAAGCAAAGGAACTTTCCAACCCAGTTGAGTGCACTTTTCCCAAGTGTGTGGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000557838.1 ENST00000558082.1 ENST00000654578.1 |
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| CDS CCA 72 bp | CAGTTTCCTCTGAAGGGTCGTTATTCTAAAAGGTCTTaGCATCTAAAAGGTTCCCTGTTTACCCTTCCAGAA | + |
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Preference number: 6 (lower is better) Translates to: QFPLKGRYSKRS*HLKGSLFTLPE Trigger: TTCTGGAAGGGTAAACAGGGAACCTTTTAGATGCCAAGACCTTTTAGAATAACGACCCTTCAGAGGAAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000558082.1 ENST00000654578.1 |
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| CDS CAA 72 bp | TTTACCACACACTTGGGAAAAGTGCACTCAACTGGGTaGGAAAGTTCCTTTGCTTGTCTTAAGAGGAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: FTTHLGKVHSTG*ESSFACLKRSS Trigger: AGAACTCCTCTTAAGACAAGCAAAGGAACTTTCCAACCCAGTTGAGTGCACTTTTCCCAAGTGTGTGGTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000557838.1 ENST00000558082.1 ENST00000654578.1 |
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