Pregenerated sensors for LINC01571 (Homo sapiens)
Ensembl gene IDs: ENSG00000260057Ensembl transcript IDs: ENST00000563603.2, ENST00000569993.6, ENST00000667113.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGAATGCGCAGGGACCATACTTGTCACCAGCCTGCCTTCCCAGCTTaGCTTTTTCATTACCTTGGAGAAAGAAGCCGGGAGGCAGGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: GMRRDHTCHQPAFPA*LFHYLGERSREAGQ Trigger: CTGGCCTGCCTCCCGGCTTCTTTCTCCAAGGTAATGAAAAAGCCAAGCTGGGAAGGCAGGCTGGTGACAAGTATGGTCCCTGCGCATTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||
| CDS CCA 90 bp | AGGAAGCGGCAGACACCCACTGGACAATACTCTGTTCTTAGGATGTaGCCGTCTGGTCCTCTCCCTTTCTTCTTGCTATGCTCCAAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: RKRQTPTGQYSVLRM*PSGPLPFFLLCSKE Trigger: CTCTTTGGAGCATAGCAAGAAGAAAGGGAGAGGACCAGACGGCCACATCCTAAGAACAGAGTATTGTCCAGTGGGTGTCTGCCGCTTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563603.2 |
||
| CDS CCA 90 bp | CATTTGGGGCGACAGCTACCTGGACAATACTCTGTTCTTAGGATGTaGCCGTCTGGTCCTCTCCCTTTCTTCTTGCTATGCTCCAAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: HLGRQLPGQYSVLRM*PSGPLPFFLLCSKE Trigger: CTCTTTGGAGCATAGCAAGAAGAAAGGGAGAGGACCAGACGGCCACATCCTAAGAACAGAGTATTGTCCAGGTAGCTGTCGCCCCAAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569993.6 |
||
| CDS CCA 90 bp | ACCAGACCCTCCATTTCACCTGGACAATACTCTGTTCTTAGGATGTaGCCGTCTGGTCCTCTCCCTTTCTTCTTGCTATGCTCCAAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: TRPSISPGQYSVLRM*PSGPLPFFLLCSKE Trigger: CTCTTTGGAGCATAGCAAGAAGAAAGGGAGAGGACCAGACGGCCACATCCTAAGAACAGAGTATTGTCCAGGTGAAATGGAGGGTCTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||
| CDS CAA 72 bp | ATGGCCGTCAGCCCGAGGAATGCGCAGGGACCATACTaGTCACCAGCCTGCCTTCCCAGCTTGGCTTTTTCA | + |
|
Preference number: 6 (lower is better) Translates to: MAVSPRNAQGPY*SPACLPSLAFS Trigger: TGAAAAAGCCAAGCTGGGAAGGCAGGCTGGTGACAAGTATGGTCCCTGCGCATTCCTCGGGCTGACGGCCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||
| CDS GCA 72 bp | GACAGAGACCTCGCCTTTCTCTACCCAGCACTTCCCTaGCCCACTTCCCTGTCATTTAAAGGGACCACGCTC | + |
|
Preference number: 6 (lower is better) Translates to: DRDLAFLYPALP*PTSLSFKGTTL Trigger: GAGCGTGGTCCCTTTAAATGACAGGGAAGTGGGGCAGGGAAGTGCTGGGTAGAGAAAGGCGAGGTCTCTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563603.2 |
||
| CDS CAA 90 bp | ATACTTGTCACCAGCCTGCCTTCCCAGCTTGGCTTTTTCATTACCTaGGAGAAAGAAGCCGGGAGGCAGGCCAGTTGCCTCAGGAGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: ILVTSLPSQLGFFIT*EKEAGRQASCLRSR Trigger: CCTGCTCCTGAGGCAACTGGCCTGCCTCCCGGCTTCTTTCTCCAAGGTAATGAAAAAGCCAAGCTGGGAAGGCAGGCTGGTGACAAGTAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||
| CDS CCA 72 bp | AGGGACCATACTTGTCACCAGCCTGCCTTCCCAGCTTaGCTTTTTCATTACCTTGGAGAAAGAAGCCGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: RDHTCHQPAFPA*LFHYLGERSRE Trigger: CTCCCGGCTTCTTTCTCCAAGGTAATGAAAAAGCCAAGCTGGGAAGGCAGGCTGGTGACAAGTATGGTCCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||
| CDS CCA 72 bp | CAGACACCCACTGGACAATACTCTGTTCTTAGGATGTaGCCGTCTGGTCCTCTCCCTTTCTTCTTGCTATGC | + |
|
Preference number: 6 (lower is better) Translates to: QTPTGQYSVLRM*PSGPLPFFLLC Trigger: GCATAGCAAGAAGAAAGGGAGAGGACCAGACGGCCACATCCTAAGAACAGAGTATTGTCCAGTGGGTGTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563603.2 |
||
| CDS CCA 72 bp | CGACAGCTACCTGGACAATACTCTGTTCTTAGGATGTaGCCGTCTGGTCCTCTCCCTTTCTTCTTGCTATGC | + |
|
Preference number: 6 (lower is better) Translates to: RQLPGQYSVLRM*PSGPLPFFLLC Trigger: GCATAGCAAGAAGAAAGGGAGAGGACCAGACGGCCACATCCTAAGAACAGAGTATTGTCCAGGTAGCTGTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569993.6 |
||
| CDS CCA 72 bp | TCCATTTCACCTGGACAATACTCTGTTCTTAGGATGTaGCCGTCTGGTCCTCTCCCTTTCTTCTTGCTATGC | + |
|
Preference number: 6 (lower is better) Translates to: SISPGQYSVLRM*PSGPLPFFLLC Trigger: GCATAGCAAGAAGAAAGGGAGAGGACCAGACGGCCACATCCTAAGAACAGAGTATTGTCCAGGTGAAATGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||
| CDS CAA 72 bp | CAACAGCCAAGAGGATGGTTGGAGAGGATAATCATGTaGTCAGGTGTAAGTAGGCATAAACAGACCAGACCC | + |
|
Preference number: 6 (lower is better) Translates to: QQPRGWLERIIM*SGVSRHKQTRP Trigger: GGGTCTGGTCTGTTTATGCCTACTTACACCTGACAACATGATTATCCTCTCCAACCATCCTCTTGGCTGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||
| CDS CAA 90 bp | GCTGACTTTCAACAGCCAAGAGGATGGTTGGAGAGGATAATCATGTaGTCAGGTGTAAGTAGGCATAAACAGACCAGACCCTCCATTTCA | + |
|
Preference number: 6 (lower is better) Translates to: ADFQQPRGWLERIIM*SGVSRHKQTRPSIS Trigger: TGAAATGGAGGGTCTGGTCTGTTTATGCCTACTTACACCTGACAACATGATTATCCTCTCCAACCATCCTCTTGGCTGTTGAAAGTCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||
| CDS TCA 72 bp | TTTCTTCCTTTTTACGAGCTTTCTTATAGCAAGGCATaGGGAAGCGGCAGACACCCACTGGACAATACTCTG | + |
|
Preference number: 6 (lower is better) Translates to: FLPFYELSYSKA*GSGRHPLDNTL Trigger: CAGAGTATTGTCCAGTGGGTGTCTGCCGCTTCCTCATGCCTTGCTATAAGAAAGCTCGTAAAAAGGAAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000563603.2 |
||
| CDS CAA 72 bp | CTGATAACAGCTGACTTTCAACAGCCAAGAGGATGGTaGGAGAGGATAATCATGTTGTCAGGTGTAAGTAGG | + |
|
Preference number: 6 (lower is better) Translates to: LITADFQQPRGW*ERIIMLSGVSR Trigger: CCTACTTACACCTGACAACATGATTATCCTCTCCAACCATCCTCTTGGCTGTTGAAAGTCAGCTGTTATCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||
| CDS CCA 72 bp | ATCCTGATAACAGCTGACTTTCAACAGCCAAGAGGATaGTTGGAGAGGATAATCATGTTGTCAGGTGTAAGT | + |
|
Preference number: 6 (lower is better) Translates to: ILITADFQQPRG*LERIIMLSGVS Trigger: ACTTACACCTGACAACATGATTATCCTCTCCAACCATCCTCTTGGCTGTTGAAAGTCAGCTGTTATCAGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||
| CDS CAA 72 bp | AAAGCTTTAACAAAAAGACCTGGAAAGAGATCCCATTaGGGGCGACAGCTACCTGGACAATACTCTGTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: KALTKRPGKRSH*GRQLPGQYSVL Trigger: AAGAACAGAGTATTGTCCAGGTAGCTGTCGCCCCAAATGGGATCTCTTTCCAGGTCTTTTTGTTAAAGCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000569993.6 |
||
| CDS CAA 90 bp | TATTGGACAGCACTGGTCAATATGTACAAGGCAACAGTGATGGATTaGAACCAAGGTCTGTTGACTTCAAATTCAGTGCTTTGGGGGTAT | + |
|
Preference number: 6 (lower is better) Translates to: YWTALVNMYKATVMD*NQGLLTSNSVLWGY Trigger: ATACCCCCAAAGCACTGAATTTGAAGTCAACAGACCTTGGTTCAAATCCATCACTGTTGCCTTGTACATATTGACCAGTGCTGTCCAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000667113.1 |
||