Pregenerated sensors for LINC01566 (Homo sapiens)
Ensembl gene IDs: ENSG00000259841Ensembl transcript IDs: ENST00000561756.5, ENST00000569242.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCTGTCTGTGGGGAGAGTCCAGGGAGACAAGTCACCTCACTTGAGTaGTGGGCTCAGAAAATGTCACAATCTTCTCTGATGGAAGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: AVCGESPGRQVTSLE*WAQKMSQSSLMEEP Trigger: GGGCTCTTCCATCAGAGAAGATTGTGACATTTTCTGAGCCCAGCACTCAAGTGAGGTGACTTGTCTCCCTGGACTCTCCCCACAGACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS GCA 90 bp | ATTGAGATCCCAGTAACCTTGTTGCTTAGCCCAGTGATGTCACAATaGTTCTTGAGGGCAGGGCACAAACAGGATCAGAGAGTCACATCA | + |
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Preference number: 5 (lower is better) Translates to: IEIPVTLLLSPVMSQ*FLRAGHKQDQRVTS Trigger: TGATGTGACTCTCTGATCCTGTTTGTGCCCTGCCCTCAAGAAGCATTGTGACATCACTGGGCTAAGCAACAAGGTTACTGGGATCTCAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561756.5 |
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| CDS GCA 90 bp | GGAGAGTCACATCTTTTAGGTGATTGGTCCAGAGATATTTCTCAATaGCCCCTGTGCACATGGCCTAGACAGAAGACACACATAAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: GESHLLGDWSRDISQ*PLCTWPRQKTHISK Trigger: CTTGCTTATGTGTGTCTTCTGTCTAGGCCATGTGCACAGGGGGCATTGAGAAATATCTCTGGACCAATCACCTAAAAGATGTGACTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS GCA 90 bp | AGACTCTGTGATGATGCTATCTCCAAATATAGTCACATTCTTAGGTaGTGGGGGTTAAGGTGTCAACATAGGAATTTTGGGAAGCAGACG | + |
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Preference number: 5 (lower is better) Translates to: RLCDDAISKYSHILR*WGLRCQHRNFGKQT Trigger: CGTCTGCTTCCCAAAATTCCTATGTTGACACCTTAACCCCCAGCACCTAAGAATGTGACTATATTTGGAGATAGCATCATCACAGAGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000561756.5 ENST00000569242.1 |
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| CDS CCA 90 bp | CTCTGTGATGATGCTATCTCCAAATATAGTCACATTCTTAGGTGCTaGGGGTTAAGGTGTCAACATAGGAATTTTGGGAAGCAGACGATT | + |
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Preference number: 5 (lower is better) Translates to: LCDDAISKYSHILRC*GLRCQHRNFGKQTI Trigger: AATCGTCTGCTTCCCAAAATTCCTATGTTGACACCTTAACCCCCAGCACCTAAGAATGTGACTATATTTGGAGATAGCATCATCACAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561756.5 ENST00000569242.1 |
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| CDS TCA 72 bp | CTGTGGGGAGAGTCCAGGGAGACAAGTCACCTCACTTaGGTGCTGGGCTCAGAAAATGTCACAATCTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: LWGESRETSHLT*VLGSENVTIFS Trigger: AGAGAAGATTGTGACATTTTCTGAGCCCAGCACTCAAGTGAGGTGACTTGTCTCCCTGGACTCTCCCCACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS GCA 72 bp | GGGGAGAGTCCAGGGAGACAAGTCACCTCACTTGAGTaGTGGGCTCAGAAAATGTCACAATCTTCTCTGATG | + |
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Preference number: 6 (lower is better) Translates to: GESPGRQVTSLE*WAQKMSQSSLM Trigger: CATCAGAGAAGATTGTGACATTTTCTGAGCCCAGCACTCAAGTGAGGTGACTTGTCTCCCTGGACTCTCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS CAA 72 bp | TCTGTGGGGAGAGTCCAGGGAGACAAGTCACCTCACTaGAGTGCTGGGCTCAGAAAATGTCACAATCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: SVGRVQGDKSPH*SAGLRKCHNLL Trigger: GAGAAGATTGTGACATTTTCTGAGCCCAGCACTCAAGTGAGGTGACTTGTCTCCCTGGACTCTCCCCACAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS CAA 72 bp | CAGGGACCTCATCTTGTTGACTCTGACACTTTGCCGTaGAAGTGGAAAGCCTCTCTTGCTCTGGTGTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: QGPHLVDSDTLP*KWKASLALVFH Trigger: GTGGAACACCAGAGCAAGAGAGGCTTTCCACTTCAACGGCAAAGTGTCAGAGTCAACAAGATGAGGTCCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS CAA 72 bp | CATCCTCAGGGACCTCATCTTGTTGACTCTGACACTTaGCCGTTGAAGTGGAAAGCCTCTCTTGCTCTGGTG | + |
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Preference number: 6 (lower is better) Translates to: HPQGPHLVDSDT*PLKWKASLALV Trigger: CACCAGAGCAAGAGAGGCTTTCCACTTCAACGGCAAAGTGTCAGAGTCAACAAGATGAGGTCCCTGAGGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS TCA 72 bp | AGGGACCTCATCTTGTTGACTCTGACACTTTGCCGTTaGAGTGGAAAGCCTCTCTTGCTCTGGTGTTCCACA | + |
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Preference number: 6 (lower is better) Translates to: RDLILLTLTLCR*SGKPLLLWCST Trigger: TGTGGAACACCAGAGCAAGAGAGGCTTTCCACTTCAACGGCAAAGTGTCAGAGTCAACAAGATGAGGTCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS GCA 72 bp | CCAGTAACCTTGTTGCTTAGCCCAGTGATGTCACAATaGTTCTTGAGGGCAGGGCACAAACAGGATCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: PVTLLLSPVMSQ*FLRAGHKQDQR Trigger: TCTCTGATCCTGTTTGTGCCCTGCCCTCAAGAAGCATTGTGACATCACTGGGCTAAGCAACAAGGTTACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561756.5 |
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| CDS CAA 72 bp | ACCTTGTTGCTTAGCCCAGTGATGTCACAATGCTTCTaGAGGGCAGGGCACAAACAGGATCAGAGAGTCACA | + |
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Preference number: 6 (lower is better) Translates to: TLLLSPVMSQCF*RAGHKQDQRVT Trigger: TGTGACTCTCTGATCCTGTTTGTGCCCTGCCCTCAAGAAGCATTGTGACATCACTGGGCTAAGCAACAAGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000561756.5 |
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| CDS TCA 72 bp | GGTGTTGAACCCACTGATGTGTCGAAATCTCTATTCTaGGCAGAGTCCAGGCAAGTGAGGAGAGTCACATCT | + |
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Preference number: 6 (lower is better) Translates to: GVEPTDVSKSLF*AESRQVRRVTS Trigger: AGATGTGACTCTCCTCACTTGCCTGGACTCTGCTCAGAATAGAGATTTCGACACATCAGTGGGTTCAACACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS TCA 72 bp | TTGAGTGCTGGGCTCAGAAAATGTCACAATCTTCTCTaGTGGAAGAGCCCAGAAAAGAAGGAAGAGCCGCAT | + |
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Preference number: 6 (lower is better) Translates to: LSAGLRKCHNLL*WKSPEKKEEPH Trigger: ATGCGGCTCTTCCTTCTTTTCTGGGCTCTTCCATCAGAGAAGATTGTGACATTTTCTGAGCCCAGCACTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS GCA 72 bp | CATCTTTTAGGTGATTGGTCCAGAGATATTTCTCAATaGCCCCTGTGCACATGGCCTAGACAGAAGACACAC | + |
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Preference number: 6 (lower is better) Translates to: HLLGDWSRDISQ*PLCTWPRQKTH Trigger: GTGTGTCTTCTGTCTAGGCCATGTGCACAGGGGGCATTGAGAAATATCTCTGGACCAATCACCTAAAAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS CCA 72 bp | CCTCATCTTGTTGACTCTGACACTTTGCCGTTGAAGTaGAAAGCCTCTCTTGCTCTGGTGTTCCACAATTCA | + |
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Preference number: 6 (lower is better) Translates to: PHLVDSDTLPLK*KASLALVFHNS Trigger: TGAATTGTGGAACACCAGAGCAAGAGAGGCTTTCCACTTCAACGGCAAAGTGTCAGAGTCAACAAGATGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS TCA 72 bp | TGTCGAAATCTCTATTCTGAGCAGAGTCCAGGCAAGTaGGGAGAGTCACATCTTTTAGGTGATTGGTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: CRNLYSEQSPGK*GESHLLGDWSR Trigger: TCTGGACCAATCACCTAAAAGATGTGACTCTCCTCACTTGCCTGGACTCTGCTCAGAATAGAGATTTCGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS TCA 72 bp | TCCTCCTTTCCAGGGAGACTAATTGTGAAGGAATATTaGATTGGTCAAATGCTCACTGTGTCTGTTGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: SSFPGRLIVKEY*IGQMLTVSVER Trigger: CCTTTCAACAGACACAGTGAGCATTTGACCAATTCAATATTCCTTCACAATTAGTCTCCCTGGAAAGGAGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000569242.1 |
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| CDS GCA 72 bp | GATGATGCTATCTCCAAATATAGTCACATTCTTAGGTaGTGGGGGTTAAGGTGTCAACATAGGAATTTTGGG | + |
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Preference number: 6 (lower is better) Translates to: DDAISKYSHILR*WGLRCQHRNFG Trigger: CCCAAAATTCCTATGTTGACACCTTAACCCCCAGCACCTAAGAATGTGACTATATTTGGAGATAGCATCATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000561756.5 ENST00000569242.1 |
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| CDS CCA 72 bp | GATGCTATCTCCAAATATAGTCACATTCTTAGGTGCTaGGGGTTAAGGTGTCAACATAGGAATTTTGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: DAISKYSHILRC*GLRCQHRNFGK Trigger: CTTCCCAAAATTCCTATGTTGACACCTTAACCCCCAGCACCTAAGAATGTGACTATATTTGGAGATAGCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561756.5 ENST00000569242.1 |
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