RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01565 (Homo sapiens)

Ensembl gene IDs: ENSG00000198685

Ensembl transcript IDs: ENST00000356020.2

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GCCACAGGGATGCCCAGGACAGGGACGACTGCTTGCCCACTGCCGTaGTCTGGGGCTCTGGGCAGTCCCTCGGCCTCACCCACTGCTCAG +
Preference number: 5 (lower is better)
Translates to: ATGMPRTGTTACPLP*SGALGSPSASPTAQ
Trigger: CTGAGCAGTGGGTGAGGCCGAGGGACTGCCCAGAGCCCCAGAGCACGGCAGTGGGCAAGCAGTCGTCCCTGTCCTGGGCATCCCTGTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 90 bp CCATGGCCACAGGGATGCCCAGGACAGGGACGACTGCTTGCCCACTaGCGTGCTCTGGGGCTCTGGGCAGTCCCTCGGCCTCACCCACTG +
Preference number: 5 (lower is better)
Translates to: PWPQGCPGQGRLLAH*RALGLWAVPRPHPL
Trigger: CAGTGGGTGAGGCCGAGGGACTGCCCAGAGCCCCAGAGCACGGCAGTGGGCAAGCAGTCGTCCCTGTCCTGGGCATCCCTGTGGCCATGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 90 bp ACCCAGGAGCTCCATGGCCACAGGGATGCCCAGGACAGGGACGACTaGTTGCCCACTGCCGTGCTCTGGGGCTCTGGGCAGTCCCTCGGC +
Preference number: 5 (lower is better)
Translates to: TQELHGHRDAQDRDD*LPTAVLWGSGQSLG
Trigger: GCCGAGGGACTGCCCAGAGCCCCAGAGCACGGCAGTGGGCAAGCAGTCGTCCCTGTCCTGGGCATCCCTGTGGCCATGGAGCTCCTGGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 90 bp ATGCCTAGAAGCTTCCAACCACCCTGGCCCAGGGTGCCTAGGGGCTaGGAGTCTGGGGGTCCCTGGAGGCGGGAGACGCTGAGTCTAGGC +
Preference number: 5 (lower is better)
Translates to: MPRSFQPPWPRVPRG*ESGGPWRRETLSLG
Trigger: GCCTAGACTCAGCGTCTCCCGCCTCCAGGGACCCCCAGACTCTCAGCCCCTAGGCACCCTGGGCCAGGGTGGTTGGAAGCTTCTAGGCAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp AGGGATGCCCAGGACAGGGACGACTGCTTGCCCACTGCCGTGCTCTaGGGCTCTGGGCAGTCCCTCGGCCTCACCCACTGCTCAGATTTT +
Preference number: 5 (lower is better)
Translates to: RDAQDRDDCLPTAVL*GSGQSLGLTHCSDF
Trigger: AAAATCTGAGCAGTGGGTGAGGCCGAGGGACTGCCCAGAGCCCCAGAGCACGGCAGTGGGCAAGCAGTCGTCCCTGTCCTGGGCATCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 90 bp CGGGGACTACAGAGAAGACTGCTCTCCCGGCAGCGTCATCTCGGCTaGCCTCGCTGGAAAGGCAGCTCTCTGTGGCCAGGTCAAGAGGGC +
Preference number: 5 (lower is better)
Translates to: RGLQRRLLSRQRHLG*PRWKGSSLWPGQEG
Trigger: GCCCTCTTGACCTGGCCACAGAGAGCTGCCTTTCCAGCGAGGTCAGCCGAGATGACGCTGCCGGGAGAGCAGTCTTCTCTGTAGTCCCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp CACACACCGCAGGTGTGTGCGTGTGGGAGCCTCTTCCTGAAGCCTTaGGGTCAGGGGCCGGGGCCCAGCAGGCTGGGTTTATTGTCCATT +
Preference number: 5 (lower is better)
Translates to: HTPQVCACGSLFLKP*GQGPGPSRLGLLSI
Trigger: AATGGACAATAAACCCAGCCTGCTGGGCCCCGGCCCCTGACCCCAAGGCTTCAGGAAGAGGCTCCCACACGCACACACCTGCGGTGTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 90 bp GCTCCTGAGAGCAAGGGGCCCTACTCGGCCATGAGCCCAGAACAATaGGAGCTTCACACACCGCAGGTGTGTGCGTGTGGGAGCCTCTTC +
Preference number: 5 (lower is better)
Translates to: APESKGPYSAMSPEQ*ELHTPQVCACGSLF
Trigger: GAAGAGGCTCCCACACGCACACACCTGCGGTGTGTGAAGCTCGCATTGTTCTGGGCTCATGGCCGAGTAGGGCCCCTTGCTCTCAGGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 90 bp TCATCCTTCCTCCGAGGAGTCCCCTCCGGGGACTACAGAGAAGACTaGTCTCCCGGCAGCGTCATCTCGGCTGACCTCGCTGGAAAGGCA +
Preference number: 5 (lower is better)
Translates to: SSFLRGVPSGDYRED*SPGSVISADLAGKA
Trigger: TGCCTTTCCAGCGAGGTCAGCCGAGATGACGCTGCCGGGAGAGCAGTCTTCTCTGTAGTCCCCGGAGGGGACTCCTCGGAGGAAGGATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp CCAGGACAGGGACGACTGCTTGCCCACTGCCGTGCTCTGGGGCTCTaGGCAGTCCCTCGGCCTCACCCACTGCTCAGATTTTCTGTAATC +
Preference number: 5 (lower is better)
Translates to: PGQGRLLAHCRALGL*AVPRPHPLLRFSVI
Trigger: GATTACAGAAAATCTGAGCAGTGGGTGAGGCCGAGGGACTGCCCAGAGCCCCAGAGCACGGCAGTGGGCAAGCAGTCGTCCCTGTCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp CTTCACCAGACTTGTCTCAGAGCAGCTGCTCACCCAGGAGCTCCATaGCCACAGGGATGCCCAGGACAGGGACGACTGCTTGCCCACTGC +
Preference number: 5 (lower is better)
Translates to: LHQTCLRAAAHPGAP*PQGCPGQGRLLAHC
Trigger: GCAGTGGGCAAGCAGTCGTCCCTGTCCTGGGCATCCCTGTGGCCATGGAGCTCCTGGGTGAGCAGCTGCTCTGAGACAAGTCTGGTGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp ACAGGGGACCTCCCCAGAGAGCTGAGAGCGGGAGAAGCCCAGCAGTaGGGACACTACCCAGAGAAAGAAACAGAGCTGAGGCTCCACCCG +
Preference number: 5 (lower is better)
Translates to: TGDLPRELRAGEAQQ*GHYPEKETELRLHP
Trigger: CGGGTGGAGCCTCAGCTCTGTTTCTTTCTCTGGGTAGTGTCCCCACTGCTGGGCTTCTCCCGCTCTCAGCTCTCTGGGGAGGTCCCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 90 bp TCAGGAGTCCTGCTGTATTCTTCACCAGACTTGTCTCAGAGCAGCTaGTCACCCAGGAGCTCCATGGCCACAGGGATGCCCAGGACAGGG +
Preference number: 5 (lower is better)
Translates to: SGVLLYSSPDLSQSS*SPRSSMATGMPRTG
Trigger: CCCTGTCCTGGGCATCCCTGTGGCCATGGAGCTCCTGGGTGAGCAGCTGCTCTGAGACAAGTCTGGTGAAGAATACAGCAGGACTCCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp ACCAGGAATCATCCACCCATGATGTTCCTAAAACCTGCCTGCGCATaGCAGCCACCGGGACGGCCTGTCAAAATGAAGATGCCTGGGCCC +
Preference number: 5 (lower is better)
Translates to: TRNHPPMMFLKPACA*QPPGRPVKMKMPGP
Trigger: GGGCCCAGGCATCTTCATTTTGACAGGCCGTCCCGGTGGCTGCCATGCGCAGGCAGGTTTTAGGAACATCATGGGTGGATGATTCCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp TCGTCATCTCTCTCTCTCTCTCTCACCATGTCAAATGGTAGTGGGTaGGTACAGGGCCCAAACTCGGTCCCCAGACCCCCGAGTGTCTCT +
Preference number: 5 (lower is better)
Translates to: SSSLSLSLTMSNGSG*VQGPNSVPRPPSVS
Trigger: AGAGACACTCGGGGGTCTGGGGACCGAGTTTGGGCCCTGTACCCACCCACTACCATTTGACATGGTGAGAGAGAGAGAGAGAGATGACGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 90 bp GCAGAGTCCTGGCACATTGTGGGCACTGGAGAAGCCATCCCTGCCTaGGCTCGTCATCTCTCTCTCTCTCTCTCACCATGTCAAATGGTA +
Preference number: 5 (lower is better)
Translates to: AESWHIVGTGEAIPA*ARHLSLSLSPCQMV
Trigger: TACCATTTGACATGGTGAGAGAGAGAGAGAGAGATGACGAGCTCAGGCAGGGATGGCTTCTCCAGTGCCCACAATGTGCCAGGACTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 90 bp CACAGCAGAGTCCTGGCACATTGTGGGCACTGGAGAAGCCATCCCTaGCTGAGCTCGTCATCTCTCTCTCTCTCTCTCACCATGTCAAAT +
Preference number: 5 (lower is better)
Translates to: HSRVLAHCGHWRSHP*LSSSSLSLSLTMSN
Trigger: ATTTGACATGGTGAGAGAGAGAGAGAGAGATGACGAGCTCAGGCAGGGATGGCTTCTCCAGTGCCCACAATGTGCCAGGACTCTGCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 90 bp CCCAGGTATACAATCCATAGAGCCGACTTCACTACTGCCTGCCACTaGCTGCTGTGTGACTGTGAGCATGTCATTCAGCCTCTCTGGGTC +
Preference number: 5 (lower is better)
Translates to: PRYTIHRADFTTACH*LLCDCEHVIQPLWV
Trigger: GACCCAGAGAGGCTGAATGACATGCTCACAGTCACACAGCAGGCAGTGGCAGGCAGTAGTGAAGTCGGCTCTATGGATTGTATACCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 90 bp GAGGAGCCCAGGTATACAATCCATAGAGCCGACTTCACTACTGCCTaGCACTGCCTGCTGTGTGACTGTGAGCATGTCATTCAGCCTCTC +
Preference number: 5 (lower is better)
Translates to: EEPRYTIHRADFTTA*HCLLCDCEHVIQPL
Trigger: GAGAGGCTGAATGACATGCTCACAGTCACACAGCAGGCAGTGGCAGGCAGTAGTGAAGTCGGCTCTATGGATTGTATACCTGGGCTCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 90 bp GGTATACAATCCATAGAGCCGACTTCACTACTGCCTGCCACTGCCTaGTGTGTGACTGTGAGCATGTCATTCAGCCTCTCTGGGTCTCAG +
Preference number: 5 (lower is better)
Translates to: GIQSIEPTSLLPATA*CVTVSMSFSLSGSQ
Trigger: CTGAGACCCAGAGAGGCTGAATGACATGCTCACAGTCACACAGCAGGCAGTGGCAGGCAGTAGTGAAGTCGGCTCTATGGATTGTATACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp GAAAAACTCTCAGTGCTAAGAGTAGAGGATGCTAGAATAGGGCAATaGGAAACGCCTGAGTCACCGGAGGGCCTCTTTGATTCCGACAGC +
Preference number: 5 (lower is better)
Translates to: EKLSVLRVEDARIGQ*ETPESPEGLFDSDS
Trigger: GCTGTCGGAATCAAAGAGGCCCTCCGGTGACTCAGGCGTTTCCCATTGCCCTATTCTAGCATCCTCTACTCTTAGCACTGAGAGTTTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp TGCCACTGCCTGCTGTGTGACTGTGAGCATGTCATTCAGCCTCTCTaGGTCTCAGTTTCAGACCTATGGGTTTGGCACAAAAGCGCTTAT +
Preference number: 5 (lower is better)
Translates to: CHCLLCDCEHVIQPL*VSVSDLWVWHKSAY
Trigger: ATAAGCGCTTTTGTGCCAAACCCATAGGTCTGAAACTGAGACCCAGAGAGGCTGAATGACATGCTCACAGTCACACAGCAGGCAGTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 90 bp AGGAAGAGAAGTAAGGCTCACCTGCCAAATCTTGCTGTGTGGCTTTaGGAAAACCACATAACCTCTCTGAGCCTGAGGTCCTTATCTCTC +
Preference number: 5 (lower is better)
Translates to: RKRSKAHLPNLAVWL*ENHITSLSLRSLSL
Trigger: GAGAGATAAGGACCTCAGGCTCAGAGAGGTTATGTGGTTTTCTCAAAGCCACACAGCAAGATTTGGCAGGTGAGCCTTACTTCTCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp AGCAGAACCCTTCATTCAAATGAAGCCTTACCCAGGACTGGGTCATaGAAAATAGCTGAAAGCAAAGTTGCTCAGAGGCTCTGTGGCTGT +
Preference number: 5 (lower is better)
Translates to: SRTLHSNEALPRTGS*KIAESKVAQRLCGC
Trigger: ACAGCCACAGAGCCTCTGAGCAACTTTGCTTTCAGCTATTTTCCATGACCCAGTCCTGGGTAAGGCTTCATTTGAATGAAGGGTTCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 90 bp CTGGTTTCCACAGATAAGCATTTAAGGAAGAATGTTCAGGAGTCCTaGTGTATTCTTCACCAGACTTGTCTCAGAGCAGCTGCTCACCCA +
Preference number: 5 (lower is better)
Translates to: LVSTDKHLRKNVQES*CILHQTCLRAAAHP
Trigger: TGGGTGAGCAGCTGCTCTGAGACAAGTCTGGTGAAGAATACAGCAGGACTCCTGAACATTCTTCCTTAAATGCTTATCTGTGGAAACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 90 bp GATGTGGCTTGTCACTTTAGCTCTGAAAAATGGGACAGAAGTTGTTaGGGGGAAATCCCTTCTCACAGAAAGCAGAATGGTGCTTTGGGA +
Preference number: 5 (lower is better)
Translates to: DVACHFSSEKWDRSC*GEIPSHRKQNGALG
Trigger: TCCCAAAGCACCATTCTGCTTTCTGTGAGAAGGGATTTCCCCTCAACAACTTCTGTCCCATTTTTCAGAGCTAAAGTGACAAGCCACATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 90 bp GGTCTCAGTTTCAGACCTATGGGTTTGGCACAAAAGCGCTTATGTTaGGAAGGGCTTGTTTTGAGGGTTAGCAATAAGATACATAAAGTG +
Preference number: 5 (lower is better)
Translates to: GLSFRPMGLAQKRLC*EGLVLRVSNKIHKV
Trigger: CACTTTATGTATCTTATTGCTAACCCTCAAAACAAGCCCTTCCCAACATAAGCGCTTTTGTGCCAAACCCATAGGTCTGAAACTGAGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp ATGCCCAGGACAGGGACGACTGCTTGCCCACTGCCGTaGTCTGGGGCTCTGGGCAGTCCCTCGGCCTCACCC +
Preference number: 6 (lower is better)
Translates to: MPRTGTTACPLP*SGALGSPSASP
Trigger: GGGTGAGGCCGAGGGACTGCCCAGAGCCCCAGAGCACGGCAGTGGGCAAGCAGTCGTCCCTGTCCTGGGCAT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp CAGGGATGCCCAGGACAGGGACGACTGCTTGCCCACTaGCGTGCTCTGGGGCTCTGGGCAGTCCCTCGGCCT +
Preference number: 6 (lower is better)
Translates to: QGCPGQGRLLAH*RALGLWAVPRP
Trigger: AGGCCGAGGGACTGCCCAGAGCCCCAGAGCACGGCAGTGGGCAAGCAGTCGTCCCTGTCCTGGGCATCCCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 72 bp CAGGACAGGGACGACTGCTTGCCCACTGCCGTGCTCTaGGGCTCTGGGCAGTCCCTCGGCCTCACCCACTGC +
Preference number: 6 (lower is better)
Translates to: QDRDDCLPTAVL*GSGQSLGLTHC
Trigger: GCAGTGGGTGAGGCCGAGGGACTGCCCAGAGCCCCAGAGCACGGCAGTGGGCAAGCAGTCGTCCCTGTCCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp CTCCATGGCCACAGGGATGCCCAGGACAGGGACGACTaGTTGCCCACTGCCGTGCTCTGGGGCTCTGGGCAG +
Preference number: 6 (lower is better)
Translates to: LHGHRDAQDRDD*LPTAVLWGSGQ
Trigger: CTGCCCAGAGCCCCAGAGCACGGCAGTGGGCAAGCAGTCGTCCCTGTCCTGGGCATCCCTGTGGCCATGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 72 bp CAGGTGTGTGCGTGTGGGAGCCTCTTCCTGAAGCCTTaGGGTCAGGGGCCGGGGCCCAGCAGGCTGGGTTTA +
Preference number: 6 (lower is better)
Translates to: QVCACGSLFLKP*GQGPGPSRLGL
Trigger: TAAACCCAGCCTGCTGGGCCCCGGCCCCTGACCCCAAGGCTTCAGGAAGAGGCTCCCACACGCACACACCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp CTCCGAGGAGTCCCCTCCGGGGACTACAGAGAAGACTaGTCTCCCGGCAGCGTCATCTCGGCTGACCTCGCT +
Preference number: 6 (lower is better)
Translates to: LRGVPSGDYRED*SPGSVISADLA
Trigger: AGCGAGGTCAGCCGAGATGACGCTGCCGGGAGAGCAGTCTTCTCTGTAGTCCCCGGAGGGGACTCCTCGGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 72 bp TGGAGGCTCCTGAGAGCAAGGGGCCCTACTCGGCCATaGGCCCAGAACAATGCGAGCTTCACACACCGCAGG +
Preference number: 6 (lower is better)
Translates to: WRLLRARGPTRP*AQNNASFTHRR
Trigger: CCTGCGGTGTGTGAAGCTCGCATTGTTCTGGGCTCATGGCCGAGTAGGGCCCCTTGCTCTCAGGAGCCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 72 bp CAGAGAAGACTGCTCTCCCGGCAGCGTCATCTCGGCTaGCCTCGCTGGAAAGGCAGCTCTCTGTGGCCAGGT +
Preference number: 6 (lower is better)
Translates to: QRRLLSRQRHLG*PRWKGSSLWPG
Trigger: ACCTGGCCACAGAGAGCTGCCTTTCCAGCGAGGTCAGCCGAGATGACGCTGCCGGGAGAGCAGTCTTCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CAA 72 bp AGGGGCCGGGGCCCAGCAGGCTGGGTTTATTGTCCATaGTCTCAGGCCGGGACAGGAAGCACTTTCTGTTCC +
Preference number: 6 (lower is better)
Translates to: RGRGPAGWVYCP*SQAGTGSTFCS
Trigger: GGAACAGAAAGTGCTTCCTGTCCCGGCCTGAGACAATGGACAATAAACCCAGCCTGCTGGGCCCCGGCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp CCCAGAACAATGCGAGCTTCACACACCGCAGGTGTGTaGGTGTGGGAGCCTCTTCCTGAAGCCTTGGGGTCA +
Preference number: 6 (lower is better)
Translates to: PRTMRASHTAGV*VWEPLPEALGS
Trigger: TGACCCCAAGGCTTCAGGAAGAGGCTCCCACACGCACACACCTGCGGTGTGTGAAGCTCGCATTGTTCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 72 bp CTCTCTCTCTCTCTCACCATGTCAAATGGTAGTGGGTaGGTACAGGGCCCAAACTCGGTCCCCAGACCCCCG +
Preference number: 6 (lower is better)
Translates to: LSLSLTMSNGSG*VQGPNSVPRPP
Trigger: CGGGGGTCTGGGGACCGAGTTTGGGCCCTGTACCCACCCACTACCATTTGACATGGTGAGAGAGAGAGAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp GTCCTGGCACATTGTGGGCACTGGAGAAGCCATCCCTaGCTGAGCTCGTCATCTCTCTCTCTCTCTCTCACC +
Preference number: 6 (lower is better)
Translates to: VLAHCGHWRSHP*LSSSSLSLSLT
Trigger: GGTGAGAGAGAGAGAGAGAGATGACGAGCTCAGGCAGGGATGGCTTCTCCAGTGCCCACAATGTGCCAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp GACCAGGAATCATCCACCCATGATGTTCCTAAAACCTaGCTGCGCATGGCAGCCACCGGGACGGCCTGTCAA +
Preference number: 6 (lower is better)
Translates to: DQESSTHDVPKT*LRMAATGTACQ
Trigger: TTGACAGGCCGTCCCGGTGGCTGCCATGCGCAGGCAGGTTTTAGGAACATCATGGGTGGATGATTCCTGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 72 bp TGGAAAGGCAGCTCTCTGTGGCCAGGTCAAGAGGGCTaGGGAGACCAGGAATCATCCACCCATGATGTTCCT +
Preference number: 6 (lower is better)
Translates to: WKGSSLWPGQEG*GDQESSTHDVP
Trigger: AGGAACATCATGGGTGGATGATTCCTGGTCTCCCCAGCCCTCTTGACCTGGCCACAGAGAGCTGCCTTTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 72 bp TGGCACATTGTGGGCACTGGAGAAGCCATCCCTGCCTaGGCTCGTCATCTCTCTCTCTCTCTCTCACCATGT +
Preference number: 6 (lower is better)
Translates to: WHIVGTGEAIPA*ARHLSLSLSPC
Trigger: ACATGGTGAGAGAGAGAGAGAGAGATGACGAGCTCAGGCAGGGATGGCTTCTCCAGTGCCCACAATGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 72 bp CTGCACCTCACTCTTATCATCCAAAAGCCTTGCCCCTaGCCGCAGGCTAGCCCAGGAAGAGAAGTAAGGCTC +
Preference number: 6 (lower is better)
Translates to: LHLTLIIQKPCP*PQASPGREVRL
Trigger: GAGCCTTACTTCTCTTCCTGGGCTAGCCTGCGGTCAGGGGCAAGGCTTTTGGATGATAAGAGTGAGGTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp AGGAATCATCCACCCATGATGTTCCTAAAACCTGCCTaGGCATGGCAGCCACCGGGACGGCCTGTCAAAATG +
Preference number: 6 (lower is better)
Translates to: RNHPPMMFLKPA*AWQPPGRPVKM
Trigger: CATTTTGACAGGCCGTCCCGGTGGCTGCCATGCGCAGGCAGGTTTTAGGAACATCATGGGTGGATGATTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 72 bp CATCCACCCATGATGTTCCTAAAACCTGCCTGCGCATaGCAGCCACCGGGACGGCCTGTCAAAATGAAGATG +
Preference number: 6 (lower is better)
Translates to: HPPMMFLKPACA*QPPGRPVKMKM
Trigger: CATCTTCATTTTGACAGGCCGTCCCGGTGGCTGCCATGCGCAGGCAGGTTTTAGGAACATCATGGGTGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 72 bp GTCAAAATGAAGATGCCTGGGCCCTGCCCCGGATACTaGGTCACAGTCTCTAAGGGTAAGGAGGCCTGGAAT +
Preference number: 6 (lower is better)
Translates to: VKMKMPGPCPGY*VTVSKGKEAWN
Trigger: ATTCCAGGCCTCCTTACCCTTAGAGACTGTGACTCAGTATCCGGGGCAGGGCCCAGGCATCTTCATTTTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp TCCATAGAGCCGACTTCACTACTGCCTGCCACTGCCTaGTGTGTGACTGTGAGCATGTCATTCAGCCTCTCT +
Preference number: 6 (lower is better)
Translates to: SIEPTSLLPATA*CVTVSMSFSLS
Trigger: AGAGAGGCTGAATGACATGCTCACAGTCACACAGCAGGCAGTGGCAGGCAGTAGTGAAGTCGGCTCTATGGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp ACAATCCATAGAGCCGACTTCACTACTGCCTGCCACTaGCTGCTGTGTGACTGTGAGCATGTCATTCAGCCT +
Preference number: 6 (lower is better)
Translates to: TIHRADFTTACH*LLCDCEHVIQP
Trigger: AGGCTGAATGACATGCTCACAGTCACACAGCAGGCAGTGGCAGGCAGTAGTGAAGTCGGCTCTATGGATTGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CAA 72 bp GGCAATGGGAAACGCCTGAGTCACCGGAGGGCCTCTTaGATTCCGACAGCCCAATCACTGAAAAGGAAAAAG +
Preference number: 6 (lower is better)
Translates to: GNGKRLSHRRAS*IPTAQSLKRKK
Trigger: CTTTTTCCTTTTCAGTGATTGGGCTGTCGGAATCAAAGAGGCCCTCCGGTGACTCAGGCGTTTCCCATTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CAA 90 bp TTTAAGGAAGAATGTTCAGGAGTCCTGCTGTATTCTTCACCAGACTaGTCTCAGAGCAGCTGCTCACCCAGGAGCTCCATGGCCACAGGG +
Preference number: 6 (lower is better)
Translates to: FKEECSGVLLYSSPD*SQSSCSPRSSMATG
Trigger: CCCTGTGGCCATGGAGCTCCTGGGTGAGCAGCTGCTCTGAGACAAGTCTGGTGAAGAATACAGCAGGACTCCTGAACATTCTTCCTTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp AGGTATACAATCCATAGAGCCGACTTCACTACTGCCTaGCACTGCCTGCTGTGTGACTGTGAGCATGTCATT +
Preference number: 6 (lower is better)
Translates to: RYTIHRADFTTA*HCLLCDCEHVI
Trigger: AATGACATGCTCACAGTCACACAGCAGGCAGTGGCAGGCAGTAGTGAAGTCGGCTCTATGGATTGTATACCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 72 bp CTTCATTCAAATGAAGCCTTACCCAGGACTGGGTCATaGAAAATAGCTGAAAGCAAAGTTGCTCAGAGGCTC +
Preference number: 6 (lower is better)
Translates to: LHSNEALPRTGS*KIAESKVAQRL
Trigger: GAGCCTCTGAGCAACTTTGCTTTCAGCTATTTTCCATGACCCAGTCCTGGGTAAGGCTTCATTTGAATGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS TCA 72 bp TGTCACTTTAGCTCTGAAAAATGGGACAGAAGTTGTTaGGGGGAAATCCCTTCTCACAGAAAGCAGAATGGT +
Preference number: 6 (lower is better)
Translates to: CHFSSEKWDRSC*GEIPSHRKQNG
Trigger: ACCATTCTGCTTTCTGTGAGAAGGGATTTCCCCTCAACAACTTCTGTCCCATTTTTCAGAGCTAAAGTGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS GCA 72 bp ACAGATAAGCATTTAAGGAAGAATGTTCAGGAGTCCTaGTGTATTCTTCACCAGACTTGTCTCAGAGCAGCT +
Preference number: 6 (lower is better)
Translates to: TDKHLRKNVQES*CILHQTCLRAA
Trigger: AGCTGCTCTGAGACAAGTCTGGTGAAGAATACAGCAGGACTCCTGAACATTCTTCCTTAAATGCTTATCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CCA 72 bp TTCAGACCTATGGGTTTGGCACAAAAGCGCTTATGTTaGGAAGGGCTTGTTTTGAGGGTTAGCAATAAGATA +
Preference number: 6 (lower is better)
Translates to: FRPMGLAQKRLC*EGLVLRVSNKI
Trigger: TATCTTATTGCTAACCCTCAAAACAAGCCCTTCCCAACATAAGCGCTTTTGTGCCAAACCCATAGGTCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2
CDS CAA 90 bp CCAGTGGGAAGATCAGGCTTTAGTGAAACCACTGCAAATATCTCATaGCAAAACAAAATAGCTGCCTTAGAAAGTTGTGATCAGGTGGTT +
Preference number: 6 (lower is better)
Translates to: PVGRSGFSETTANIS*QNKIAALESCDQVV
Trigger: AACCACCTGATCACAACTTTCTAAGGCAGCTATTTTGTTTTGCAATGAGATATTTGCAGTGGTTTCACTAAAGCCTGATCTTCCCACTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000356020.2