Pregenerated sensors for LINC01564 (Homo sapiens)
Ensembl gene IDs: ENSG00000235899Ensembl transcript IDs: ENST00000448327.2, ENST00000659393.1, ENST00000668029.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGTCTTCTAGCCCTCTTTTATCAGGAGAGGATGCTGGATCCATCCTaGTGCTCTTTGGCATTCTGGGCACTGTGCTGCTGTGAAGATGCC | + |
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Preference number: 5 (lower is better) Translates to: RLLALFYQERMLDPS*CSLAFWALCCCEDA Trigger: GGCATCTTCACAGCAGCACAGTGCCCAGAATGCCAAAGAGCAGCAGGATGGATCCAGCATCCTCTCCTGATAAAAGAGGGCTAGAAGACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS GCA 90 bp | ACACCTCCCCACCCTAGTGAGATCATCATCATTGATTGCTGCAGTTaGATCCCTGCTGTCACCACCACTTCCACCACAGGTGACCAATCT | + |
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Preference number: 5 (lower is better) Translates to: TPPHPSEIIIIDCCS*IPAVTTTSTTGDQS Trigger: AGATTGGTCACCTGTGGTGGAAGTGGTGGTGACAGCAGGGATGCAACTGCAGCAATCAATGATGATGATCTCACTAGGGTGGGGAGGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS GCA 90 bp | CCTTTAACACCTCCCCACCCTAGTGAGATCATCATCATTGATTGCTaGAGTTGCATCCCTGCTGTCACCACCACTTCCACCACAGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: PLTPPHPSEIIIIDC*SCIPAVTTTSTTGD Trigger: GTCACCTGTGGTGGAAGTGGTGGTGACAGCAGGGATGCAACTGCAGCAATCAATGATGATGATCTCACTAGGGTGGGGAGGTGTTAAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS GCA 90 bp | TGCATCCCTGCTGTCACCACCACTTCCACCACAGGTGACCAATCTTaGCAGATGGACCTTGCTGTTATTACCAACAACTTTGACGGGTCT | + |
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Preference number: 5 (lower is better) Translates to: CIPAVTTTSTTGDQS*QMDLAVITNNFDGS Trigger: AGACCCGTCAAAGTTGTTGGTAATAACAGCAAGGTCCATCTGGCAAGATTGGTCACCTGTGGTGGAAGTGGTGGTGACAGCAGGGATGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS GCA 90 bp | CTTCTAGCCCTCTTTTATCAGGAGAGGATGCTGGATCCATCCTGCTaGTCTTTGGCATTCTGGGCACTGTGCTGCTGTGAAGATGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: LLALFYQERMLDPSC*SLAFWALCCCEDAF Trigger: AAAGGCATCTTCACAGCAGCACAGTGCCCAGAATGCCAAAGAGCAGCAGGATGGATCCAGCATCCTCTCCTGATAAAAGAGGGCTAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CCA 90 bp | CCCTCTTTTATCAGGAGAGGATGCTGGATCCATCCTGCTGCTCTTTaGCATTCTGGGCACTGTGCTGCTGTGAAGATGCCTTTAACACCT | + |
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Preference number: 5 (lower is better) Translates to: PSFIRRGCWIHPAAL*HSGHCAAVKMPLTP Trigger: AGGTGTTAAAGGCATCTTCACAGCAGCACAGTGCCCAGAATGCCAAAGAGCAGCAGGATGGATCCAGCATCCTCTCCTGATAAAAGAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS TCA 90 bp | TTGCTGCAGTTGCATCCCTGCTGTCACCACCACTTCCACCACAGGTaGCCAATCTTGCCAGATGGACCTTGCTGTTATTACCAACAACTT | + |
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Preference number: 5 (lower is better) Translates to: LLQLHPCCHHHFHHR*PILPDGPCCYYQQL Trigger: AAGTTGTTGGTAATAACAGCAAGGTCCATCTGGCAAGATTGGTCACCTGTGGTGGAAGTGGTGGTGACAGCAGGGATGCAACTGCAGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CCA 90 bp | CTGCTGTCACCACCACTTCCACCACAGGTGACCAATCTTGCCAGATaGACCTTGCTGTTATTACCAACAACTTTGACGGGTCTATACCTC | + |
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Preference number: 5 (lower is better) Translates to: LLSPPLPPQVTNLAR*TLLLLPTTLTGLYL Trigger: GAGGTATAGACCCGTCAAAGTTGTTGGTAATAACAGCAAGGTCCATCTGGCAAGATTGGTCACCTGTGGTGGAAGTGGTGGTGACAGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS GCA 90 bp | ACTTTATTTAATCATTGGTTAAGGGTTGCTTCTGGGGTTGTTAATTaGTTGGCACTTCTGGCGTTCTTTATTAACCTTCACAGCAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: TLFNHWLRVASGVVN*LALLAFFINLHSRR Trigger: TCTTCTGCTGTGAAGGTTAATAAAGAACGCCAGAAGTGCCAAGCAATTAACAACCCCAGAAGCAACCCTTAACCAATGATTAAATAAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS GCA 72 bp | CCTCCCCACCCTAGTGAGATCATCATCATTGATTGCTaGAGTTGCATCCCTGCTGTCACCACCACTTCCACC | + |
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Preference number: 6 (lower is better) Translates to: PPHPSEIIIIDC*SCIPAVTTTST Trigger: GGTGGAAGTGGTGGTGACAGCAGGGATGCAACTGCAGCAATCAATGATGATGATCTCACTAGGGTGGGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CCA 72 bp | ATCAGGAGAGGATGCTGGATCCATCCTGCTGCTCTTTaGCATTCTGGGCACTGTGCTGCTGTGAAGATGCCT | + |
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Preference number: 6 (lower is better) Translates to: IRRGCWIHPAAL*HSGHCAAVKMP Trigger: AGGCATCTTCACAGCAGCACAGTGCCCAGAATGCCAAAGAGCAGCAGGATGGATCCAGCATCCTCTCCTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CAA 72 bp | TATCAGGAGAGGATGCTGGATCCATCCTGCTGCTCTTaGGCATTCTGGGCACTGTGCTGCTGTGAAGATGCC | + |
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Preference number: 6 (lower is better) Translates to: YQERMLDPSCCS*AFWALCCCEDA Trigger: GGCATCTTCACAGCAGCACAGTGCCCAGAATGCCAAAGAGCAGCAGGATGGATCCAGCATCCTCTCCTGATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CAA 90 bp | GCCCTCTTTTATCAGGAGAGGATGCTGGATCCATCCTGCTGCTCTTaGGCATTCTGGGCACTGTGCTGCTGTGAAGATGCCTTTAACACC | + |
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Preference number: 6 (lower is better) Translates to: ALFYQERMLDPSCCS*AFWALCCCEDAFNT Trigger: GGTGTTAAAGGCATCTTCACAGCAGCACAGTGCCCAGAATGCCAAAGAGCAGCAGGATGGATCCAGCATCCTCTCCTGATAAAAGAGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS GCA 72 bp | CACCCTAGTGAGATCATCATCATTGATTGCTGCAGTTaGATCCCTGCTGTCACCACCACTTCCACCACAGGT | + |
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Preference number: 6 (lower is better) Translates to: HPSEIIIIDCCS*IPAVTTTSTTG Trigger: ACCTGTGGTGGAAGTGGTGGTGACAGCAGGGATGCAACTGCAGCAATCAATGATGATGATCTCACTAGGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CCA 72 bp | CCACCACTTCCACCACAGGTGACCAATCTTGCCAGATaGACCTTGCTGTTATTACCAACAACTTTGACGGGT | + |
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Preference number: 6 (lower is better) Translates to: PPLPPQVTNLAR*TLLLLPTTLTG Trigger: ACCCGTCAAAGTTGTTGGTAATAACAGCAAGGTCCATCTGGCAAGATTGGTCACCTGTGGTGGAAGTGGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS TCA 72 bp | CATGTATGTGCCGCCTGGTTTTCCTATAACCAGCTCTaGCACTTCTGCCTAACAGAGCCATCTACCCATATC | + |
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Preference number: 6 (lower is better) Translates to: HVCAAWFSYNQL*HFCLTEPSTHI Trigger: GATATGGGTAGATGGCTCTGTTAGGCAGAAGTGTCAGAGCTGGTTATAGGAAAACCAGGCGGCACATACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448327.2 |
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| CDS TCA 72 bp | CAGTTTGTTTTCCATCCCTTGCTGGAAGTGGAGGAGTaGGACAGAGGTTACTTCGGTGTCTGGGATCATGTA | + |
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Preference number: 6 (lower is better) Translates to: QFVFHPLLEVEE*DRGYFGVWDHV Trigger: TACATGATCCCAGACACCGAAGTAACCTCTGTCTCACTCCTCCACTTCCAGCAAGGGATGGAAAACAAACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448327.2 |
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| CDS CCA 72 bp | TTGCTGATTTCTTGCCTTTTGAGCTCTTCAGCCAGCTaGCTGTGGTGGACAGGGCTGAATATGTTTTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: LLISCLLSSSAS*LWWTGLNMFSA Trigger: TGCAGAAAACATATTCAGCCCTGTCCACCACAGCCAGCTGGCTGAAGAGCTCAAAAGGCAAGAAATCAGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000448327.2 ENST00000659393.1 ENST00000668029.1 |
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| CDS CAA 90 bp | TCACCACCACTTCCACCACAGGTGACCAATCTTGCCAGATGGACCTaGCTGTTATTACCAACAACTTTGACGGGTCTATACCTCACCAAT | + |
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Preference number: 6 (lower is better) Translates to: SPPLPPQVTNLARWT*LLLPTTLTGLYLTN Trigger: ATTGGTGAGGTATAGACCCGTCAAAGTTGTTGGTAATAACAGCAAGGTCCATCTGGCAAGATTGGTCACCTGTGGTGGAAGTGGTGGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CAA 72 bp | ACGGGTCTATACCTCACCAATGTTGGAGCTCTCTTATaGGTGTCCACAGTGGTTGTCTGGCTCCTAAAGATT | + |
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Preference number: 6 (lower is better) Translates to: TGLYLTNVGALL*VSTVVVWLLKI Trigger: AATCTTTAGGAGCCAGACAACCACTGTGGACACCAATAAGAGAGCTCCAACATTGGTGAGGTATAGACCCGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CAA 72 bp | CTTGCCAGATGGACCTTGCTGTTATTACCAACAACTTaGACGGGTCTATACCTCACCAATGTTGGAGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: LARWTLLLLPTT*TGLYLTNVGAL Trigger: GAGAGCTCCAACATTGGTGAGGTATAGACCCGTCAAAGTTGTTGGTAATAACAGCAAGGTCCATCTGGCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CAA 72 bp | CTTCCACCACAGGTGACCAATCTTGCCAGATGGACCTaGCTGTTATTACCAACAACTTTGACGGGTCTATAC | + |
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Preference number: 6 (lower is better) Translates to: LPPQVTNLARWT*LLLPTTLTGLY Trigger: GTATAGACCCGTCAAAGTTGTTGGTAATAACAGCAAGGTCCATCTGGCAAGATTGGTCACCTGTGGTGGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CAA 90 bp | ATCCTTCCAGTAAGTTTTCCAGTAAGCCTTCCAGTGAGCATTCACTaGAGCCAGTTTCAGTTTGTTTTCCATCCCTTGCTGGAAGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: ILPVSFPVSLPVSIH*SQFQFVFHPLLEVE Trigger: CTCCACTTCCAGCAAGGGATGGAAAACAAACTGAAACTGGCTCAAGTGAATGCTCACTGGAAGGCTTACTGGAAAACTTACTGGAAGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000448327.2 |
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| CDS CAA 90 bp | GTGACCAATCTTGCCAGATGGACCTTGCTGTTATTACCAACAACTTaGACGGGTCTATACCTCACCAATGTTGGAGCTCTCTTATTGGTG | + |
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Preference number: 6 (lower is better) Translates to: VTNLARWTLLLLPTT*TGLYLTNVGALLLV Trigger: CACCAATAAGAGAGCTCCAACATTGGTGAGGTATAGACCCGTCAAAGTTGTTGGTAATAACAGCAAGGTCCATCTGGCAAGATTGGTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS TCA 72 bp | TTGCCAGATGGACCTTGCTGTTATTACCAACAACTTTaGCGGGTCTATACCTCACCAATGTTGGAGCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: LPDGPCCYYQQL*RVYTSPMLELS Trigger: AGAGAGCTCCAACATTGGTGAGGTATAGACCCGTCAAAGTTGTTGGTAATAACAGCAAGGTCCATCTGGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CCA 72 bp | GAGACATCCTGTTTATTCAGGGTTACTGCAGTCCCTTaGGGCGAGGACCATCTATTTTCATGTACTGCTAAA | + |
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Preference number: 6 (lower is better) Translates to: ETSCLFRVTAVP*GEDHLFSCTAK Trigger: TTTAGCAGTACATGAAAATAGATGGTCCTCGCCCCAAGGGACTGCAGTAACCCTGAATAAACAGGATGTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000448327.2 ENST00000659393.1 ENST00000668029.1 |
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| CDS CCA 72 bp | TTTCAGTTTGTTTTCCATCCCTCAGAATTATGTCCCTaGGAGTTGAAGGAGCTTGGGTATGTAATCATCCAC | + |
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Preference number: 6 (lower is better) Translates to: FQFVFHPSELCP*ELKELGYVIIH Trigger: GTGGATGATTACATACCCAAGCTCCTTCAACTCCCAGGGACATAATTCTGAGGGATGGAAAACAAACTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CAA 72 bp | GTAAGTTTTCCAGTAAGCCTTCCAGTGAGCATTCACTaGAGCCAGTTTCAGTTTGTTTTCCATCCCTCAGAA | + |
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Preference number: 6 (lower is better) Translates to: VSFPVSLPVSIH*SQFQFVFHPSE Trigger: TTCTGAGGGATGGAAAACAAACTGAAACTGGCTCAAGTGAATGCTCACTGGAAGGCTTACTGGAAAACTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS GCA 72 bp | AATCATTGGTTAAGGGTTGCTTCTGGGGTTGTTAATTaGTTGGCACTTCTGGCGTTCTTTATTAACCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: NHWLRVASGVVN*LALLAFFINLH Trigger: GTGAAGGTTAATAAAGAACGCCAGAAGTGCCAAGCAATTAACAACCCCAGAAGCAACCCTTAACCAATGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CCA 72 bp | TCCCTCAGAATTATGTCCCTGGGAGTTGAAGGAGCTTaGGTATGTAATCATCCACTTTATTTAATCATTGGT | + |
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Preference number: 6 (lower is better) Translates to: SLRIMSLGVEGA*VCNHPLYLIIG Trigger: ACCAATGATTAAATAAAGTGGATGATTACATACCCAAGCTCCTTCAACTCCCAGGGACATAATTCTGAGGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CAA 72 bp | TTTGTTTTCCATCCCTCAGAATTATGTCCCTGGGAGTaGAAGGAGCTTGGGTATGTAATCATCCACTTTATT | + |
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Preference number: 6 (lower is better) Translates to: FVFHPSELCPWE*KELGYVIIHFI Trigger: AATAAAGTGGATGATTACATACCCAAGCTCCTTCAACTCCCAGGGACATAATTCTGAGGGATGGAAAACAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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| CDS CAA 90 bp | TTATTTAATCATTGGTTAAGGGTTGCTTCTGGGGTTGTTAATTGCTaGGCACTTCTGGCGTTCTTTATTAACCTTCACAGCAGAAGAACA | + |
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Preference number: 6 (lower is better) Translates to: LFNHWLRVASGVVNC*ALLAFFINLHSRRT Trigger: TGTTCTTCTGCTGTGAAGGTTAATAAAGAACGCCAGAAGTGCCAAGCAATTAACAACCCCAGAAGCAACCCTTAACCAATGATTAAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668029.1 |
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