Pregenerated sensors for LINC01563 (Homo sapiens)
Ensembl gene IDs: ENSG00000236819Ensembl transcript IDs: ENST00000456235.1, ENST00000656070.1, ENST00000659567.1, ENST00000664341.1, ENST00000664827.1, ENST00000664838.1, ENST00000666441.1, ENST00000668335.1, ENST00000671326.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCGCAGCACTTCCGGCTTGCTCTCCGCCATGTTGGATCTCAGGCTTaGACACCCATTCCTGCCCGGGGGCTTTTGTCCTCGCTGTTCCCT | + |
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Preference number: 5 (lower is better) Translates to: AQHFRLALRHVGSQA*TPIPARGLLSSLFP Trigger: AGGGAACAGCGAGGACAAAAGCCCCCGGGCAGGAATGGGTGTGCAAGCCTGAGATCCAACATGGCGGAGAGCAAGCCGGAAGTGCTGCGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS GCA 90 bp | GTGAGTCAGGGGAAGAGCATGTGTCTGCCACAGCTCGGCTCTCACTaGTGCTGTAGAGCCACTGCCTCCAGGCCCAGCTGCAGCTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: VSQGKSMCLPQLGSH*CCRATASRPSCSCF Trigger: GAAGCAGCTGCAGCTGGGCCTGGAGGCAGTGGCTCTACAGCAGCAGTGAGAGCCGAGCTGTGGCAGACACATGCTCTTCCCCTGACTCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 |
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| CDS GCA 90 bp | AGGGCAGAGTTCAGGAGAAACCGGGGTGAACTTCCAGGAGTTCTCTaGGGAGTCACATGGACAACACTTAGTCCTCCCAGCAACAACGTG | + |
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Preference number: 5 (lower is better) Translates to: RAEFRRNRGELPGVL*GVTWTTLSPPSNNV Trigger: CACGTTGTTGCTGGGAGGACTAAGTGTTGTCCATGTGACTCCGCAGAGAACTCCTGGAAGTTCACCCCGGTTTCTCCTGAACTCTGCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666441.1 |
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| CDS CCA 90 bp | CATTGGCTGGTTGTTCCTAATAGAAAAATAGGTCAGCAGCCTCGCTaGAGGGAACTGGGCAGCCGTGAGTCAGGGGAAGAGCATGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: HWLVVPNRKIGQQPR*RELGSRESGEEHVS Trigger: AGACACATGCTCTTCCCCTGACTCACGGCTGCCCAGTTCCCTCCAGCGAGGCTGCTGACCTATTTTTCTATTAGGAACAACCAGCCAATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS CCA 90 bp | ACCAAGAACCCACCAGTGCCAGACAACAGAAGGAAAAGCCTGGAATaGCTGCTAACTTCTCATCAGAAACGAGGGGGCTGGAAGACACTG | + |
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Preference number: 5 (lower is better) Translates to: TKNPPVPDNRRKSLE*LLTSHQKRGGWKTL Trigger: CAGTGTCTTCCAGCCCCCTCGTTTCTGATGAGAAGTTAGCAGCCATTCCAGGCTTTTCCTTCTGTTGTCTGGCACTGGTGGGTTCTTGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000664341.1 ENST00000664827.1 ENST00000671326.1 |
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| CDS CCA 90 bp | GGTAACTTGAGAGCGGCCACCACAATCCTGCCCTCTGCTGTCAAATaGGAAGTGCAGAGTCATGTGAATATCTGTAACAGTTACCCACTT | + |
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Preference number: 5 (lower is better) Translates to: GNLRAATTILPSAVK*EVQSHVNICNSYPL Trigger: AAGTGGGTAACTGTTACAGATATTCACATGACTCTGCACTTCCCATTTGACAGCAGAGGGCAGGATTGTGGTGGCCGCTCTCAAGTTACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659567.1 ENST00000671326.1 |
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| CDS TCA 90 bp | AGGATTTTTATTGGAGGTCAGTCATATAGGCATGGAGCATCTACATaGCTGGCCTTAGCAATTTATTCCTCAGTTCCCCACCCATCCAGA | + |
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Preference number: 5 (lower is better) Translates to: RIFIGGQSYRHGAST*LALAIYSSVPHPSR Trigger: TCTGGATGGGTGGGGAACTGAGGAATAAATTGCTAAGGCCAGTCATGTAGATGCTCCATGCCTATATGACTGACCTCCAATAAAAATCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000666441.1 |
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| CDS GCA 90 bp | CAAAAAGGACATTATTTCTACATGGTTACCTTAGTTGATAGTTGTTaGTCTGGTGATAGTGTTGTCATGGGCATCTCTGTATTCTTAACA | + |
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Preference number: 5 (lower is better) Translates to: QKGHYFYMVTLVDSC*SGDSVVMGISVFLT Trigger: TGTTAAGAATACAGAGATGCCCATGACAACACTATCACCAGAGCAACAACTATCAACTAAGGTAACCATGTAGAAATAATGTCCTTTTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000659567.1 ENST00000671326.1 |
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| CDS CCA 72 bp | CCCCGCGCAGCACTTCCGGCTTGCTCTCCGCCATGTTaGATCTCAGGCTTGCACACCCATTCCTGCCCGGGG | + |
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Preference number: 6 (lower is better) Translates to: PRAALPACSPPC*ISGLHTHSCPG Trigger: CCCCGGGCAGGAATGGGTGTGCAAGCCTGAGATCCAACATGGCGGAGAGCAAGCCGGAAGTGCTGCGCGGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS CAA 72 bp | TCCCCGCGCAGCACTTCCGGCTTGCTCTCCGCCATGTaGGATCTCAGGCTTGCACACCCATTCCTGCCCGGG | + |
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Preference number: 6 (lower is better) Translates to: SPRSTSGLLSAM*DLRLAHPFLPG Trigger: CCCGGGCAGGAATGGGTGTGCAAGCCTGAGATCCAACATGGCGGAGAGCAAGCCGGAAGTGCTGCGCGGGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS CAA 90 bp | CGCGCAGCACTTCCGGCTTGCTCTCCGCCATGTTGGATCTCAGGCTaGCACACCCATTCCTGCCCGGGGGCTTTTGTCCTCGCTGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: RAALPACSPPCWISG*HTHSCPGAFVLAVP Trigger: GGGAACAGCGAGGACAAAAGCCCCCGGGCAGGAATGGGTGTGCAAGCCTGAGATCCAACATGGCGGAGAGCAAGCCGGAAGTGCTGCGCG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS GCA 72 bp | CCGCCATGTTGGATCTCAGGCTTGCACACCCATTCCTaGCCGGGGGCTTTTGTCCTCGCTGTTCCCTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: PPCWISGLHTHS*PGAFVLAVPSA Trigger: GGCAGAGGGAACAGCGAGGACAAAAGCCCCCGGGCAGGAATGGGTGTGCAAGCCTGAGATCCAACATGGCGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS CAA 72 bp | CTTCCGGCTTGCTCTCCGCCATGTTGGATCTCAGGCTaGCACACCCATTCCTGCCCGGGGGCTTTTGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: LPACSPPCWISG*HTHSCPGAFVL Trigger: GAGGACAAAAGCCCCCGGGCAGGAATGGGTGTGCAAGCCTGAGATCCAACATGGCGGAGAGCAAGCCGGAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS CAA 72 bp | AGTGCTCCCTTAGGATCCCCGCGCAGCACTTCCGGCTaGCTCTCCGCCATGTTGGATCTCAGGCTTGCACAC | + |
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Preference number: 6 (lower is better) Translates to: SAPLGSPRSTSG*LSAMLDLRLAH Trigger: GTGTGCAAGCCTGAGATCCAACATGGCGGAGAGCAAGCCGGAAGTGCTGCGCGGGGATCCTAAGGGAGCACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS CAA 90 bp | GTCCTGTTCAGTGCTCCCTTAGGATCCCCGCGCAGCACTTCCGGCTaGCTCTCCGCCATGTTGGATCTCAGGCTTGCACACCCATTCCTG | + |
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Preference number: 6 (lower is better) Translates to: VLFSAPLGSPRSTSG*LSAMLDLRLAHPFL Trigger: CAGGAATGGGTGTGCAAGCCTGAGATCCAACATGGCGGAGAGCAAGCCGGAAGTGCTGCGCGGGGATCCTAAGGGAGCACTGAACAGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS CCA 72 bp | CCCTCTGCCTGGAATGCTCTTCCTCGTGCATCTCCGTaGCCTCCTCCACTTCATTCGGGCTTCACTAAACTT | + |
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Preference number: 6 (lower is better) Translates to: PSAWNALPRASP*PPPLHSGFTKL Trigger: AAGTTTAGTGAAGCCCGAATGAAGTGGAGGAGGCCACGGAGATGCACGAGGAAGAGCATTCCAGGCAGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS GCA 72 bp | TTCAGGAGAAACCGGGGTGAACTTCCAGGAGTTCTCTaGGGAGTCACATGGACAACACTTAGTCCTCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: FRRNRGELPGVL*GVTWTTLSPPS Trigger: GCTGGGAGGACTAAGTGTTGTCCATGTGACTCCGCAGAGAACTCCTGGAAGTTCACCCCGGTTTCTCCTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666441.1 |
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| CDS CCA 72 bp | GTTGTTCCTAATAGAAAAATAGGTCAGCAGCCTCGCTaGAGGGAACTGGGCAGCCGTGAGTCAGGGGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: VVPNRKIGQQPR*RELGSRESGEE Trigger: CTCTTCCCCTGACTCACGGCTGCCCAGTTCCCTCCAGCGAGGCTGCTGACCTATTTTTCTATTAGGAACAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 8 transcripts: ENST00000456235.1 ENST00000656070.1 ENST00000659567.1 ENST00000664827.1 ENST00000664838.1 ENST00000666441.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS CCA 72 bp | CCACCAGTGCCAGACAACAGAAGGAAAAGCCTGGAATaGCTGCTAACTTCTCATCAGAAACGAGGGGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PPVPDNRRKSLE*LLTSHQKRGGW Trigger: CCAGCCCCCTCGTTTCTGATGAGAAGTTAGCAGCCATTCCAGGCTTTTCCTTCTGTTGTCTGGCACTGGTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000664341.1 ENST00000664827.1 ENST00000671326.1 |
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| CDS CCA 72 bp | CATATTCCAAAGACCCAGAAGTTAGCTCCCCAGAGCTaGTCAGGGGCCAGTCCTTCCTTCGGAATGTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: HIPKTQKLAPQS*SGASPSFGMFR Trigger: CCTGAACATTCCGAAGGAAGGACTGGCCCCTGACCAGCTCTGGGGAGCTAACTTCTGGGTCTTTGGAATATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000666441.1 |
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| CDS GCA 72 bp | TCATTCTTGAAGTCAATGAGACCAAGAACCCACCAGTaGCAGACAACAGAAGGAAAAGCCTGGAATGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SFLKSMRPRTHQ*QTTEGKAWNGC Trigger: GCAGCCATTCCAGGCTTTTCCTTCTGTTGTCTGGCACTGGTGGGTTCTTGGTCTCATTGACTTCAAGAATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000664341.1 ENST00000664827.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS CAA 72 bp | TTATGTAAAATAGCGCAAGGGTCCACGGCTTCATTCTaGAAGTCAATGAGACCAAGAACCCACCAGTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: LCKIAQGSTASF*KSMRPRTHQCQ Trigger: CTGGCACTGGTGGGTTCTTGGTCTCATTGACTTCAAGAATGAAGCCGTGGACCCTTGCGCTATTTTACATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000664341.1 ENST00000664827.1 ENST00000668335.1 ENST00000671326.1 |
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| CDS CAA 72 bp | CCTAGTTCCACCGAGGTAACCCTTTTTAGCACACACTaGCTCCCTGATACTCAACATTTCATGAGAGGAGAG | + |
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Preference number: 6 (lower is better) Translates to: PSSTEVTLFSTH*LPDTQHFMRGE Trigger: CTCTCCTCTCATGAAATGTTGAGTATCAGGGAGCAAGTGTGTGCTAAAAAGGGTTACCTCGGTGGAACTAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666441.1 |
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| CDS CAA 90 bp | TTTGAGCAACCTAGTTCCACCGAGGTAACCCTTTTTAGCACACACTaGCTCCCTGATACTCAACATTTCATGAGAGGAGAGGGAGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: FEQPSSTEVTLFSTH*LPDTQHFMRGEGVS Trigger: AGAAACTCCCTCTCCTCTCATGAAATGTTGAGTATCAGGGAGCAAGTGTGTGCTAAAAAGGGTTACCTCGGTGGAACTAGGTTGCTCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666441.1 |
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| CDS TCA 72 bp | TTAGCACACACTTGCTCCCTGATACTCAACATTTCATaGGAGGAGAGGGAGTTTCTACTCCACTCCTCAGAA | + |
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Preference number: 6 (lower is better) Translates to: LAHTCSLILNIS*EEREFLLHSSE Trigger: TTCTGAGGAGTGGAGTAGAAACTCCCTCTCCTCTCATGAAATGTTGAGTATCAGGGAGCAAGTGTGTGCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666441.1 |
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| CDS CAA 72 bp | TTCTGCCAGCAAAACGTCACTTTGCAGGTCTGTCCTTaGCAAGTAATGCTGAGTAGTTCACTTCAGAACCAG | + |
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Preference number: 6 (lower is better) Translates to: FCQQNVTLQVCP*QVMLSSSLQNQ Trigger: CTGGTTCTGAAGTGAACTACTCAGCATTACTTGCAAAGGACAGACCTGCAAAGTGACGTTTTGCTGGCAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656070.1 |
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| CDS CAA 72 bp | ACTGTTTTAAATAAGCTGATTTGTGATGATGGTAACTaGAGAGCGGCCACCACAATCCTGCCCTCTGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: TVLNKLICDDGN*RAATTILPSAV Trigger: GACAGCAGAGGGCAGGATTGTGGTGGCCGCTCTCAAGTTACCATCATCACAAATCAGCTTATTTAAAACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659567.1 ENST00000671326.1 |
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| CDS GCA 72 bp | AGGCCTCAAAAACTGCAAGTCTTAGTTGATAGTTGTTaGTCTGGTGATAGTGTTGTCATGGGCATCTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: RPQKLQVLVDSC*SGDSVVMGISV Trigger: TACAGAGATGCCCATGACAACACTATCACCAGAGCAACAACTATCAACTAAGACTTGCAGTTTTTGAGGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000656070.1 |
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| CDS GCA 72 bp | CATTATTTCTACATGGTTACCTTAGTTGATAGTTGTTaGTCTGGTGATAGTGTTGTCATGGGCATCTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: HYFYMVTLVDSC*SGDSVVMGISV Trigger: TACAGAGATGCCCATGACAACACTATCACCAGAGCAACAACTATCAACTAAGGTAACCATGTAGAAATAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659567.1 ENST00000671326.1 |
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