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Pregenerated sensors for LINC01562 (Homo sapiens)

Ensembl gene IDs: ENSG00000203356

Ensembl transcript IDs: ENST00000366181.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GAGGGCCTCACACCGAAGCTGGACCTGATTACTTGTCTTCCCAGGTaGTCTCTGGGCTCTATCAGGAACAAGCCAGGTATGATCATCCTT +
Preference number: 5 (lower is better)
Translates to: EGLTPKLDLITCLPR*SLGSIRNKPGMIIL
Trigger: AAGGATGATCATACCTGGCTTGTTCCTGATAGAGCCCAGAGACCACCTGGGAAGACAAGTAATCAGGTCCAGCTTCGGTGTGAGGCCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS GCA 90 bp GCATCTAGAATGGTGAATCCTTTCCAGAAGGTTTTCAATGTACTTTaGCCAAATCCATCAGCAGAATCACTATCTATGGCAGCTATAGCC +
Preference number: 5 (lower is better)
Translates to: ASRMVNPFQKVFNVL*PNPSAESLSMAAIA
Trigger: GGCTATAGCTGCCATAGATAGTGATTCTGCTGATGGATTTGGGCAAAGTACATTGAAAACCTTCTGGAAAGGATTCACCATTCTAGATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS TCA 72 bp GGAGAATCGCTTGAGCTTGGGAGGTTAAGGTTGCAGTaGGCAGAGATCACATCACTGCACTCAAGCCTGGGT +
Preference number: 6 (lower is better)
Translates to: GESLELGRLRLQ*AEITSLHSSLG
Trigger: ACCCAGGCTTGAGTGCAGTGATGTGATCTCTGCTCACTGCAACCTTAACCTCCCAAGCTCAAGCGATTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS CCA 72 bp ACACCGAAGCTGGACCTGATTACTTGTCTTCCCAGGTaGTCTCTGGGCTCTATCAGGAACAAGCCAGGTATG +
Preference number: 6 (lower is better)
Translates to: TPKLDLITCLPR*SLGSIRNKPGM
Trigger: CATACCTGGCTTGTTCCTGATAGAGCCCAGAGACCACCTGGGAAGACAAGTAATCAGGTCCAGCTTCGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS CCA 72 bp GCCAGGTATGATCATCCTTTTCCCCAGTCCTTAGCGTaGGGTCTGGTATACACACGCACACACAACTTCAGT +
Preference number: 6 (lower is better)
Translates to: ARYDHPFPQSLA*GLVYTRTHNFS
Trigger: ACTGAAGTTGTGTGTGCGTGTGTATACCAGACCCCACGCTAAGGACTGGGGAAAAGGATGATCATACCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS CAA 90 bp GCAATTCAGTCACATCTTCAGGTTCCATTTCTAATTCTAGTTCCCTaGCTACTTCTATCATACCTGCAGTTACTTCCTCTAGTGAAGTCT +
Preference number: 6 (lower is better)
Translates to: AIQSHLQVPFLILVP*LLLSYLQLLPLVKS
Trigger: AGACTTCACTAGAGGAAGTAACTGCAGGTATGATAGAAGTAGCAAGGGAACTAGAATTAGAAATGGAACCTGAAGATGTGACTGAATTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS GCA 72 bp ATGGTGAATCCTTTCCAGAAGGTTTTCAATGTACTTTaGCCAAATCCATCAGCAGAATCACTATCTATGGCA +
Preference number: 6 (lower is better)
Translates to: MVNPFQKVFNVL*PNPSAESLSMA
Trigger: TGCCATAGATAGTGATTCTGCTGATGGATTTGGGCAAAGTACATTGAAAACCTTCTGGAAAGGATTCACCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS CCA 72 bp AATAAGACTTGCAGGTTTAAATTACTCCTTGATCCATaGGCTGCAGAAAGGATGTGTATTAGCAGGCATGAA +
Preference number: 6 (lower is better)
Translates to: NKTCRFKLLLDP*AAERMCISRHE
Trigger: TTCATGCCTGCTAATACACATCCTTTCTGCAGCCCATGGATCAAGGAGTAATTTAAACCTGCAAGTCTTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS CAA 72 bp AATGGTGAATCCTTTCCAGAAGGTTTTCAATGTACTTaGCCCAAATCCATCAGCAGAATCACTATCTATGGC +
Preference number: 6 (lower is better)
Translates to: NGESFPEGFQCT*PKSISRITIYG
Trigger: GCCATAGATAGTGATTCTGCTGATGGATTTGGGCAAAGTACATTGAAAACCTTCTGGAAAGGATTCACCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS CAA 72 bp AGTCACTTTCTTCCAAACTCCTGTAAATGTTGGTTTTaGGCTTCCTCCCTGGAACCACAAATATTCTTAATG +
Preference number: 6 (lower is better)
Translates to: SHFLPNSCKCWF*ASSLEPQIFLM
Trigger: CATTAAGAATATTTGTGGTTCCAGGGAGGAAGCCAAAAACCAACATTTACAGGAGTTTGGAAGAAAGTGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS CAA 72 bp TCACATCTTCAGGTTCCATTTCTAATTCTAGTTCCCTaGCTACTTCTATCATACCTGCAGTTACTTCCTCTA +
Preference number: 6 (lower is better)
Translates to: SHLQVPFLILVP*LLLSYLQLLPL
Trigger: TAGAGGAAGTAACTGCAGGTATGATAGAAGTAGCAAGGGAACTAGAATTAGAAATGGAACCTGAAGATGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000366181.2
CDS CAA 72 bp GATAGCATTTTACTCATAGTAGAATATCTTCCAAAATaGGACTCAGTCCTCTCAAACCCTGCTGCTGCTTTA +
Preference number: 6 (lower is better)
Translates to: DSILLIVEYLPK*DSVLSNPAAAL
Trigger: TAAAGCAGCAGCAGGGTTTGAGAGGACTGAGTCCAATTTTGGAAGATATTCTACTATGAGTAAAATGCTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000366181.2