Pregenerated sensors for LINC01560 (Homo sapiens)
Ensembl gene IDs: ENSG00000196741Ensembl transcript IDs: ENST00000357412.2, ENST00000624822.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGGACGCGACGGACCAAGCTGGGTCAAACTGCCGACAGCTCCATTaGGCAGCATGTCCACCCCTGATGACCAAATCCCACCAAACGTGC | + |
|
Preference number: 5 (lower is better) Translates to: QDATDQAGSNCRQLH*AACPPLMTKSHQTC Trigger: GCACGTTTGGTGGGATTTGGTCATCAGGGGTGGACATGCTGCCCAATGGAGCTGTCGGCAGTTTGACCCAGCTTGGTCCGTCGCGTCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS GCA 90 bp | AATCGATTCCTAGAACAGGACGCGACGGACCAAGCTGGGTCAAACTaGCGACAGCTCCATTGGGCAGCATGTCCACCCCTGATGACCAAA | + |
|
Preference number: 5 (lower is better) Translates to: NRFLEQDATDQAGSN*RQLHWAACPPLMTK Trigger: TTTGGTCATCAGGGGTGGACATGCTGCCCAATGGAGCTGTCGGCAGTTTGACCCAGCTTGGTCCGTCGCGTCCTGTTCTAGGAATCGATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS CCA 90 bp | TTGAGCCTTAAGGCAAGTTTCATCAAATTTCAAACTCAACGTTCTTaGGCCACAAGGCAAATGGGCTTAGAAATCACTAACACAGGGATT | + |
|
Preference number: 5 (lower is better) Translates to: LSLKASFIKFQTQRS*ATRQMGLEITNTGI Trigger: AATCCCTGTGTTAGTGATTTCTAAGCCCATTTGCCTTGTGGCCCAAGAACGTTGAGTTTGAAATTTGATGAAACTTGCCTTAAGGCTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS TCA 90 bp | TTTCAATCAAGGCACAAAACCATTTTTGAAAGCTGGCCTCGTACTTaGGCCTTAAGGCAAGTTTCATCAAATTTCAAACTCAACGTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: FQSRHKTIFESWPRT*ALRQVSSNFKLNVL Trigger: AAGAACGTTGAGTTTGAAATTTGATGAAACTTGCCTTAAGGCTCAAGTACGAGGCCAGCTTTCAAAAATGGTTTTGTGCCTTGATTGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS GCA 72 bp | CTAGAACAGGACGCGACGGACCAAGCTGGGTCAAACTaGCGACAGCTCCATTGGGCAGCATGTCCACCCCTG | + |
|
Preference number: 6 (lower is better) Translates to: LEQDATDQAGSN*RQLHWAACPPL Trigger: CAGGGGTGGACATGCTGCCCAATGGAGCTGTCGGCAGTTTGACCCAGCTTGGTCCGTCGCGTCCTGTTCTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS GCA 72 bp | GCATGTCCACCCCTGATGACCAAATCCCACCAAACGTaGAGCTGGCACTCGGCCGCCTTTGTTTCCTTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: ACPPLMTKSHQT*SWHSAAFVSFP Trigger: GGGGAAGGAAACAAAGGCGGCCGAGTGCCAGCTGCACGTTTGGTGGGATTTGGTCATCAGGGGTGGACATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS CAA 90 bp | ACAGGACGCGACGGACCAAGCTGGGTCAAACTGCCGACAGCTCCATaGGGCAGCATGTCCACCCCTGATGACCAAATCCCACCAAACGTG | + |
|
Preference number: 6 (lower is better) Translates to: TGRDGPSWVKLPTAP*GSMSTPDDQIPPNV Trigger: CACGTTTGGTGGGATTTGGTCATCAGGGGTGGACATGCTGCCCAATGGAGCTGTCGGCAGTTTGACCCAGCTTGGTCCGTCGCGTCCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS CCA 72 bp | ACGGACCAAGCTGGGTCAAACTGCCGACAGCTCCATTaGGCAGCATGTCCACCCCTGATGACCAAATCCCAC | + |
|
Preference number: 6 (lower is better) Translates to: TDQAGSNCRQLH*AACPPLMTKSH Trigger: GTGGGATTTGGTCATCAGGGGTGGACATGCTGCCCAATGGAGCTGTCGGCAGTTTGACCCAGCTTGGTCCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS CAA 72 bp | GACGGACCAAGCTGGGTCAAACTGCCGACAGCTCCATaGGGCAGCATGTCCACCCCTGATGACCAAATCCCA | + |
|
Preference number: 6 (lower is better) Translates to: DGPSWVKLPTAP*GSMSTPDDQIP Trigger: TGGGATTTGGTCATCAGGGGTGGACATGCTGCCCAATGGAGCTGTCGGCAGTTTGACCCAGCTTGGTCCGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS TCA 72 bp | GGAAACACACATTTTAAAAGGCCCAACGCACAAGCTTaGACCAATAGAGCCGCAGAGTACGATAAATCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: GNTHFKRPNAQA*TNRAAEYDKSN Trigger: GTTGGATTTATCGTACTCTGCGGCTCTATTGGTTCAAGCTTGTGCGTTGGGCCTTTTAAAATGTGTGTTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS TCA 72 bp | AGGCACAAAACCATTTTTGAAAGCTGGCCTCGTACTTaGGCCTTAAGGCAAGTTTCATCAAATTTCAAACTC | + |
|
Preference number: 6 (lower is better) Translates to: RHKTIFESWPRT*ALRQVSSNFKL Trigger: GAGTTTGAAATTTGATGAAACTTGCCTTAAGGCTCAAGTACGAGGCCAGCTTTCAAAAATGGTTTTGTGCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||
| CDS CCA 72 bp | AAGGCAAGTTTCATCAAATTTCAAACTCAACGTTCTTaGGCCACAAGGCAAATGGGCTTAGAAATCACTAAC | + |
|
Preference number: 6 (lower is better) Translates to: KASFIKFQTQRS*ATRQMGLEITN Trigger: GTTAGTGATTTCTAAGCCCATTTGCCTTGTGGCCCAAGAACGTTGAGTTTGAAATTTGATGAAACTTGCCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000357412.2 ENST00000624822.1 |
||