Pregenerated sensors for LINC01553 (Homo sapiens)
Ensembl gene IDs: ENSG00000235931Ensembl transcript IDs: ENST00000430888.1, ENST00000444900.1, ENST00000521074.1
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTCCTGATAGTTCCAGAGGAAAATTTCTGGAGCAAAGGTTCTGACTaGGGCCAGGGGGATGGAATACTGTGGTTGGCTAACCCTGTAGTG | + |
|
Preference number: 5 (lower is better) Translates to: FLIVPEENFWSKGSD*GQGDGILWLANPVV Trigger: CACTACAGGGTTAGCCAACCACAGTATTCCATCCCCCTGGCCTCAGTCAGAACCTTTGCTCCAGAAATTTTCCTCTGGAACTATCAGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS GCA 90 bp | CTTCCTCCTTTGTTTCCATCTGTGTGGTGGCTTCACTCCTGTAGGTaGTGTTCCTCCGAGATAGATAATTTGGCCATGACAGTACTAGGT | + |
|
Preference number: 5 (lower is better) Translates to: LPPLFPSVWWLHSCR*CSSEIDNLAMTVLG Trigger: ACCTAGTACTGTCATGGCCAAATTATCTATCTCGGAGGAACAGCACCTACAGGAGTGAAGCCACCACACAGATGGAAACAAAGGAGGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS TCA 90 bp | TCATTATCAGCATGTGCTTGCCTTGAGAGCTATGGCAGTTTCTGGTaGCTTTATTGCAGACAGCAGTCAATCCACAACTCCTCGCAAAGG | + |
|
Preference number: 5 (lower is better) Translates to: SLSACACLESYGSFW*LYCRQQSIHNSSQR Trigger: CCTTTGCGAGGAGTTGTGGATTGACTGCTGTCTGCAATAAAGTCACCAGAAACTGCCATAGCTCTCAAGGCAAGCACATGCTGATAATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS TCA 90 bp | AGCTTTGAGTCTCAGCAGCTTGTCATTATCAGCATGTGCTTGCCTTaGGAGCTATGGCAGTTTCTGGTGACTTTATTGCAGACAGCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: SFESQQLVIISMCLP*ELWQFLVTLLQTAV Trigger: GACTGCTGTCTGCAATAAAGTCACCAGAAACTGCCATAGCTCTCAAGGCAAGCACATGCTGATAATGACAAGCTGCTGAGACTCAAAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS TCA 90 bp | TATCAGAAGTGTGGTGGGCGATCGTCCCTAGTCAAAAGGCCACATTaGATTCATCTGTTTCTCCAGAGCTCTGTTGAGTTATTGGCAAAC | + |
|
Preference number: 5 (lower is better) Translates to: YQKCGGRSSLVKRPH*IHLFLQSSVELLAN Trigger: GTTTGCCAATAACTCAACAGAGCTCTGGAGAAACAGATGAATTCAATGTGGCCTTTTGACTAGGGACGATCGCCCACCACACTTCTGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS CCA 90 bp | CTCCAGAGCTCTGTTGAGTTATTGGCAAACAGTAGGAGCTTCCTTTaGGGTTTCATCTTCACTATAGGTCTGTTAGGTCAAGGGTTTAGT | + |
|
Preference number: 5 (lower is better) Translates to: LQSSVELLANSRSFL*GFIFTIGLLGQGFS Trigger: ACTAAACCCTTGACCTAACAGACCTATAGTGAAGATGAAACCCCAAAGGAAGCTCCTACTGTTTGCCAATAACTCAACAGAGCTCTGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521074.1 |
||
| CDS TCA 90 bp | TTGCAGACAGCAGTCAATCCACAACTCCTCGCAAAGGCTGGTGATTaGGCAATAAGCTTTTTGAAAACTCTTCCTGAGATCTTTCATTCA | + |
|
Preference number: 5 (lower is better) Translates to: LQTAVNPQLLAKAGD*AISFLKTLPEIFHS Trigger: TGAATGAAAGATCTCAGGAAGAGTTTTCAAAAAGCTTATTGCTCAATCACCAGCCTTTGCGAGGAGTTGTGGATTGACTGCTGTCTGCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS GCA 90 bp | GTCACTAAATGTCAGTGTATTTTCAAGGGGAGAGGAATTAGGCCATaGCTCTTACTAGGATGGGCAGCAAAGAATTTGTGGATGTATCTA | + |
|
Preference number: 5 (lower is better) Translates to: VTKCQCIFKGRGIRP*LLLGWAAKNLWMYL Trigger: TAGATACATCCACAAATTCTTTGCTGCCCATCCTAGTAAGAGGCATGGCCTAATTCCTCTCCCCTTGAAAATACACTGACATTTAGTGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS CCA 90 bp | GGAATTAGGCCATGCCTCTTACTAGGATGGGCAGCAAAGAATTTGTaGATGTATCTAATCCACCATACCAAATATACCACATCTGTTGGA | + |
|
Preference number: 5 (lower is better) Translates to: GIRPCLLLGWAAKNL*MYLIHHTKYTTSVG Trigger: TCCAACAGATGTGGTATATTTGGTATGGTGGATTAGATACATCCACAAATTCTTTGCTGCCCATCCTAGTAAGAGGCATGGCCTAATTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS CCA 90 bp | TGTATTTTCAAGGGGAGAGGAATTAGGCCATGCCTCTTACTAGGATaGGCAGCAAAGAATTTGTGGATGTATCTAATCCACCATACCAAA | + |
|
Preference number: 5 (lower is better) Translates to: CIFKGRGIRPCLLLG*AAKNLWMYLIHHTK Trigger: TTTGGTATGGTGGATTAGATACATCCACAAATTCTTTGCTGCCCATCCTAGTAAGAGGCATGGCCTAATTCCTCTCCCCTTGAAAATACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS TCA 90 bp | CCTCTGTGTGAGCTTACCTTAAAGGTACTAAGGCATGAAAGAACATaGCTAAAATACCAAATCCCTTGGCTACCTTTGGGGTTTCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: PLCELTLKVLRHERT*LKYQIPWLPLGFHL Trigger: AAGATGAAACCCCAAAGGTAGCCAAGGGATTTGGTATTTTAGTCATGTTCTTTCATGCCTTAGTACCTTTAAGGTAAGCTCACACAGAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000444900.1 |
||
| CDS CCA 90 bp | TTTGTGGATGTATCTAATCCACCATACCAAATATACCACATCTGTTaGACCATAGTTCTGTTTTTATCTATTTGCATCTTTCCCAATTCC | + |
|
Preference number: 5 (lower is better) Translates to: FVDVSNPPYQIYHIC*TIVLFLSICIFPNS Trigger: GGAATTGGGAAAGATGCAAATAGATAAAAACAGAACTATGGTCCAACAGATGTGGTATATTTGGTATGGTGGATTAGATACATCCACAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000430888.1 ENST00000444900.1 ENST00000521074.1 |
||
| CDS CCA 72 bp | AAAAAGGGTGGTGGTGGTATTGGCTTGTGGCAGGACTaGATCCAGGCAAACAATGCCGAGTGGTATCCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: KKGGGGIGLWQD*IQANNAEWYPS Trigger: AGAAGGATACCACTCGGCATTGTTTGCCTGGATCCAGTCCTGCCACAAGCCAATACCACCACCACCCTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS TCA 72 bp | GTTCCAGAGGAAAATTTCTGGAGCAAAGGTTCTGACTaGGGCCAGGGGGATGGAATACTGTGGTTGGCTAAC | + |
|
Preference number: 6 (lower is better) Translates to: VPEENFWSKGSD*GQGDGILWLAN Trigger: GTTAGCCAACCACAGTATTCCATCCCCCTGGCCTCAGTCAGAACCTTTGCTCCAGAAATTTTCCTCTGGAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS TCA 72 bp | GATAGTTCCAGAGGAAAATTTCTGGAGCAAAGGTTCTaGCTGAGGCCAGGGGGATGGAATACTGTGGTTGGC | + |
|
Preference number: 6 (lower is better) Translates to: DSSRGKFLEQRF*LRPGGWNTVVG Trigger: GCCAACCACAGTATTCCATCCCCCTGGCCTCAGTCAGAACCTTTGCTCCAGAAATTTTCCTCTGGAACTATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS TCA 72 bp | GCATGTGCTTGCCTTGAGAGCTATGGCAGTTTCTGGTaGCTTTATTGCAGACAGCAGTCAATCCACAACTCC | + |
|
Preference number: 6 (lower is better) Translates to: ACACLESYGSFW*LYCRQQSIHNS Trigger: GGAGTTGTGGATTGACTGCTGTCTGCAATAAAGTCACCAGAAACTGCCATAGCTCTCAAGGCAAGCACATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS GCA 72 bp | TATTGGCTTGTGGCAGGACTGGATCCAGGCAAACAATaGCGAGTGGTATCCTTCTTATCTTCCTTTCCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: YWLVAGLDPGKQ*RVVSFLSSFPF Trigger: GAAGGGAAAGGAAGATAAGAAGGATACCACTCGGCATTGTTTGCCTGGATCCAGTCCTGCCACAAGCCAATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS TCA 72 bp | TGTGGTGGGCGATCGTCCCTAGTCAAAAGGCCACATTaGATTCATCTGTTTCTCCAGAGCTCTGTTGAGTTA | + |
|
Preference number: 6 (lower is better) Translates to: CGGRSSLVKRPH*IHLFLQSSVEL Trigger: TAACTCAACAGAGCTCTGGAGAAACAGATGAATTCAATGTGGCCTTTTGACTAGGGACGATCGCCCACCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS GCA 72 bp | TTGTTTCCATCTGTGTGGTGGCTTCACTCCTGTAGGTaGTGTTCCTCCGAGATAGATAATTTGGCCATGACA | + |
|
Preference number: 6 (lower is better) Translates to: LFPSVWWLHSCR*CSSEIDNLAMT Trigger: TGTCATGGCCAAATTATCTATCTCGGAGGAACAGCACCTACAGGAGTGAAGCCACCACACAGATGGAAACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS CAA 72 bp | CACTCCTGTAGGTGCTGTTCCTCCGAGATAGATAATTaGGCCATGACAGTACTAGGTTTCCAAAATGGCGTC | + |
|
Preference number: 6 (lower is better) Translates to: HSCRCCSSEIDN*AMTVLGFQNGV Trigger: GACGCCATTTTGGAAACCTAGTACTGTCATGGCCAAATTATCTATCTCGGAGGAACAGCACCTACAGGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS TCA 72 bp | TCTCAGCAGCTTGTCATTATCAGCATGTGCTTGCCTTaGGAGCTATGGCAGTTTCTGGTGACTTTATTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: SQQLVIISMCLP*ELWQFLVTLLQ Trigger: CTGCAATAAAGTCACCAGAAACTGCCATAGCTCTCAAGGCAAGCACATGCTGATAATGACAAGCTGCTGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS CCA 72 bp | AAGGGGAGAGGAATTAGGCCATGCCTCTTACTAGGATaGGCAGCAAAGAATTTGTGGATGTATCTAATCCAC | + |
|
Preference number: 6 (lower is better) Translates to: KGRGIRPCLLLG*AAKNLWMYLIH Trigger: GTGGATTAGATACATCCACAAATTCTTTGCTGCCCATCCTAGTAAGAGGCATGGCCTAATTCCTCTCCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS CCA 72 bp | GCAGACTTTCCCATTACCTTGCCCTTGGTACACCACTaGATGATGGCAAATATCTTCTCTCAGTTAGTGGTT | + |
|
Preference number: 6 (lower is better) Translates to: ADFPITLPLVHH*MMANIFSQLVV Trigger: AACCACTAACTGAGAGAAGATATTTGCCATCATCCAGTGGTGTACCAAGGGCAAGGTAATGGGAAAGTCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521074.1 |
||
| CDS CAA 72 bp | GGCCACATTGAATTCATCTGTTTCTCCAGAGCTCTGTaGAGTTATTGGCAAACAGTAGGAGCTTCCTTTGGG | + |
|
Preference number: 6 (lower is better) Translates to: GHIEFICFSRAL*SYWQTVGASFG Trigger: CCCAAAGGAAGCTCCTACTGTTTGCCAATAACTCAACAGAGCTCTGGAGAAACAGATGAATTCAATGTGGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521074.1 |
||
| CDS CAA 72 bp | TCTGCATACAAGGCAGACTTTCCCATTACCTTGCCCTaGGTACACCACTGGATGATGGCAAATATCTTCTCT | + |
|
Preference number: 6 (lower is better) Translates to: SAYKADFPITLP*VHHWMMANIFS Trigger: AGAGAAGATATTTGCCATCATCCAGTGGTGTACCAAGGGCAAGGTAATGGGAAAGTCTGCCTTGTATGCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521074.1 |
||
| CDS CCA 72 bp | GAATTCATCTGTTTCTCCAGAGCTCTGTTGAGTTATTaGCAAACAGTAGGAGCTTCCTTTGGGGTTTCATCT | + |
|
Preference number: 6 (lower is better) Translates to: EFICFSRALLSY*QTVGASFGVSS Trigger: AGATGAAACCCCAAAGGAAGCTCCTACTGTTTGCCAATAACTCAACAGAGCTCTGGAGAAACAGATGAATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000521074.1 |
||
| CDS CCA 72 bp | TCTGTTGAGTTATTGGCAAACAGTAGGAGCTTCCTTTaGGGTTTCATCTTCACTATAGGTCTGTTAGGTCAA | + |
|
Preference number: 6 (lower is better) Translates to: SVELLANSRSFL*GFIFTIGLLGQ Trigger: TTGACCTAACAGACCTATAGTGAAGATGAAACCCCAAAGGAAGCTCCTACTGTTTGCCAATAACTCAACAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521074.1 |
||
| CDS CAA 90 bp | AGAGGAATTAGGCCATGCCTCTTACTAGGATGGGCAGCAAAGAATTaGTGGATGTATCTAATCCACCATACCAAATATACCACATCTGTT | + |
|
Preference number: 6 (lower is better) Translates to: RGIRPCLLLGWAAKN*WMYLIHHTKYTTSV Trigger: AACAGATGTGGTATATTTGGTATGGTGGATTAGATACATCCACAAATTCTTTGCTGCCCATCCTAGTAAGAGGCATGGCCTAATTCCTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000444900.1 ENST00000521074.1 |
||
| CDS CCA 72 bp | ATTGTCCTTTTTATGCTGATCCCAAGATTGCATTCCTaGCATAAATCCCACTTGGTCATATTATCCCTTTTA | + |
|
Preference number: 6 (lower is better) Translates to: IVLFMLIPRLHS*HKSHLVILSLL Trigger: TAAAAGGGATAATATGACCAAGTGGGATTTATGCCAGGAATGCAATCTTGGGATCAGCATAAAAAGGACAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000521074.1 |
||
| CDS CCA 72 bp | AAATATTCTGACTCCATGGACTCTCTGAAAAGATCTTaGATTACTCCAGATCTGTGGATCATACTTTCATTT | + |
|
Preference number: 6 (lower is better) Translates to: KYSDSMDSLKRS*ITPDLWIILSF Trigger: AAATGAAAGTATGATCCACAGATCTGGAGTAATCCAAGATCTTTTCAGAGAGTCCATGGAGTCAGAATATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000521074.1 |
||
| CDS CAA 72 bp | CTGATCCCAAGATTGCATTCCTGGCATAAATCCCACTaGGTCATATTATCCCTTTTATATAAAGGAGAAAAT | + |
|
Preference number: 6 (lower is better) Translates to: LIPRLHSWHKSH*VILSLLYKGEN Trigger: ATTTTCTCCTTTATATAAAAGGGATAATATGACCAAGTGGGATTTATGCCAGGAATGCAATCTTGGGATCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000521074.1 |
||