Pregenerated sensors for LINC01548 (Homo sapiens)
Ensembl gene IDs: ENSG00000229086Ensembl transcript IDs: ENST00000451980.4, ENST00000637328.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCAGAAGGAGATTGTCCGTCCTTCCAGCAGAATGGAGCCCAGCAGTaGTCACCCCTTACCCATGGTCCGGCCACCACGTGTGGCTCACTC | + |
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Preference number: 5 (lower is better) Translates to: AEGDCPSFQQNGAQQ*SPLTHGPATTCGSL Trigger: GAGTGAGCCACACGTGGTGGCCGGACCATGGGTAAGGGGTGAGCACTGCTGGGCTCCATTCTGCTGGAAGGACGGACAATCTCCTTCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS CCA 90 bp | GTCCTTCCAGCAGAATGGAGCCCAGCAGTGCTCACCCCTTACCCATaGTCCGGCCACCACGTGTGGCTCACTCTGTCCTTTTCAGGGTTC | + |
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Preference number: 5 (lower is better) Translates to: VLPAEWSPAVLTPYP*SGHHVWLTLSFSGF Trigger: GAACCCTGAAAAGGACAGAGTGAGCCACACGTGGTGGCCGGACCATGGGTAAGGGGTGAGCACTGCTGGGCTCCATTCTGCTGGAAGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS TCA 90 bp | TTCCAAGGGTGTCCGCGCTTGAGCTCCCCACAGAAGCAGGACCTGTaGCAAGGGCTCATCGAATGGACTGCGACCCTCAAGGGAAGATGT | + |
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Preference number: 5 (lower is better) Translates to: FQGCPRLSSPQKQDL*QGLIEWTATLKGRC Trigger: ACATCTTCCCTTGAGGGTCGCAGTCCATTCGATGAGCCCTTGTCACAGGTCCTGCTTCTGTGGGGAGCTCAAGCGCGGACACCCTTGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451980.4 ENST00000637328.1 |
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| CDS GCA 90 bp | CTCCCCACAGAAGCAGGACCTGTGACAAGGGCTCATCGAATGGACTaGGACCCTCAAGGGAAGATGTTCCATAAGCTCGGCGCGAGTCAG | + |
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Preference number: 5 (lower is better) Translates to: LPTEAGPVTRAHRMD*DPQGKMFHKLGASQ Trigger: CTGACTCGCGCCGAGCTTATGGAACATCTTCCCTTGAGGGTCGCAGTCCATTCGATGAGCCCTTGTCACAGGTCCTGCTTCTGTGGGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451980.4 ENST00000637328.1 |
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| CDS TCA 90 bp | ATGGGAAGGAAGAGACTTGGGGAGTGTTCCAAGGGTGTCCGCGCTTaGGCTCCCCACAGAAGCAGGACCTGTGACAAGGGCTCATCGAAT | + |
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Preference number: 5 (lower is better) Translates to: MGRKRLGECSKGVRA*APHRSRTCDKGSSN Trigger: ATTCGATGAGCCCTTGTCACAGGTCCTGCTTCTGTGGGGAGCTCAAGCGCGGACACCCTTGGAACACTCCCCAAGTCTCTTCCTTCCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000451980.4 ENST00000637328.1 |
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| CDS GCA 90 bp | TTCAGGGTTCATCCCAGAACTGGAGCTCACATTCCCAGAAGGCTTTaGTTTTCAGGCTTTTCAGGTTATCGCCAATTGAGGCTAAATGCT | + |
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Preference number: 5 (lower is better) Translates to: FRVHPRTGAHIPRRL*FSGFSGYRQLRLNA Trigger: AGCATTTAGCCTCAATTGGCGATAACCTGAAAAGCCTGAAAAGCAAAGCCTTCTGGGAATGTGAGCTCCAGTTCTGGGATGAACCCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS GCA 90 bp | GCTTTGCTTTTCAGGCTTTTCAGGTTATCGCCAATTGAGGCTAAATaGTCTGACGTTGTGTCTTTGACGTGCCAAACTGTTCACTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: ALLFRLFRLSPIEAK*SDVVSLTCQTVHLF Trigger: GAACAAGTGAACAGTTTGGCACGTCAAAGACACAACGTCAGAGCATTTAGCCTCAATTGGCGATAACCTGAAAAGCCTGAAAAGCAAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS GCA 90 bp | GAAAATCAAAGCAGCCCAGGTCTTGCTCAAGTTCTGATTCTGAGCTaGTCCGGTCATCATCACATATTTGTTTCCTGTATACGGATTCTT | + |
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Preference number: 5 (lower is better) Translates to: ENQSSPGLAQVLILS*SGHHHIFVSCIRIL Trigger: AAGAATCCGTATACAGGAAACAAATATGTGATGATGACCGGAGCAGCTCAGAATCAGAACTTGAGCAAGACCTGGGCTGCTTTGATTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS TCA 90 bp | TCAGGTTATCGCCAATTGAGGCTAAATGCTCTGACGTTGTGTCTTTaGCGTGCCAAACTGTTCACTTGTTCACTGGAAACATGTAATATA | + |
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Preference number: 5 (lower is better) Translates to: SGYRQLRLNALTLCL*RAKLFTCSLETCNI Trigger: TATATTACATGTTTCCAGTGAACAAGTGAACAGTTTGGCACGTCAAAGACACAACGTCAGAGCATTTAGCCTCAATTGGCGATAACCTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS GCA 72 bp | GATTGTCCGTCCTTCCAGCAGAATGGAGCCCAGCAGTaGTCACCCCTTACCCATGGTCCGGCCACCACGTGT | + |
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Preference number: 6 (lower is better) Translates to: DCPSFQQNGAQQ*SPLTHGPATTC Trigger: ACACGTGGTGGCCGGACCATGGGTAAGGGGTGAGCACTGCTGGGCTCCATTCTGCTGGAAGGACGGACAATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS CCA 72 bp | GCAGAATGGAGCCCAGCAGTGCTCACCCCTTACCCATaGTCCGGCCACCACGTGTGGCTCACTCTGTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: AEWSPAVLTPYP*SGHHVWLTLSF Trigger: AAAGGACAGAGTGAGCCACACGTGGTGGCCGGACCATGGGTAAGGGGTGAGCACTGCTGGGCTCCATTCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS TCA 72 bp | TGTCCGCGCTTGAGCTCCCCACAGAAGCAGGACCTGTaGCAAGGGCTCATCGAATGGACTGCGACCCTCAAG | + |
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Preference number: 6 (lower is better) Translates to: CPRLSSPQKQDL*QGLIEWTATLK Trigger: CTTGAGGGTCGCAGTCCATTCGATGAGCCCTTGTCACAGGTCCTGCTTCTGTGGGGAGCTCAAGCGCGGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000451980.4 ENST00000637328.1 |
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| CDS TCA 72 bp | AAGAGACTTGGGGAGTGTTCCAAGGGTGTCCGCGCTTaGGCTCCCCACAGAAGCAGGACCTGTGACAAGGGC | + |
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Preference number: 6 (lower is better) Translates to: KRLGECSKGVRA*APHRSRTCDKG Trigger: GCCCTTGTCACAGGTCCTGCTTCTGTGGGGAGCTCAAGCGCGGACACCCTTGGAACACTCCCCAAGTCTCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000451980.4 ENST00000637328.1 |
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| CDS CAA 90 bp | TCACAGCGTCCGGCCCCCTCACACCAGTTATTGTGCAGAAGGAGATaGTCCGTCCTTCCAGCAGAATGGAGCCCAGCAGTGCTCACCCCT | + |
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Preference number: 6 (lower is better) Translates to: SQRPAPSHQLLCRRR*SVLPAEWSPAVLTP Trigger: AGGGGTGAGCACTGCTGGGCTCCATTCTGCTGGAAGGACGGACAATCTCCTTCTGCACAATAACTGGTGTGAGGGGGCCGGACGCTGTGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS GCA 72 bp | CCCTCACAGCGTCCGGCCCCCTCACACCAGTTATTGTaGAGAAGGAGATTGTCCGTCCTTCCAGCAGAATGG | + |
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Preference number: 6 (lower is better) Translates to: PSQRPAPSHQLL*RRRLSVLPAEW Trigger: CCATTCTGCTGGAAGGACGGACAATCTCCTTCTGCACAATAACTGGTGTGAGGGGGCCGGACGCTGTGAGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS CCA 72 bp | GTGCTCACCCCTTACCCATGGTCCGGCCACCACGTGTaGCTCACTCTGTCCTTTTCAGGGTTCATCCCAGAA | + |
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Preference number: 6 (lower is better) Translates to: VLTPYPWSGHHV*LTLSFSGFIPE Trigger: TTCTGGGATGAACCCTGAAAAGGACAGAGTGAGCCACACGTGGTGGCCGGACCATGGGTAAGGGGTGAGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS CCA 72 bp | GGAAATGGGGTCACCAACTGCTCCATTAGCCTACTTTaGGTGGACCCTCCCCTTCCTGACCCTCACAGCGTC | + |
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Preference number: 6 (lower is better) Translates to: GNGVTNCSISLL*VDPPLPDPHSV Trigger: GACGCTGTGAGGGTCAGGAAGGGGAGGGTCCACCCAAAGTAGGCTAATGGAGCAGTTGGTGACCCCATTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS CAA 72 bp | CCGGCCCCCTCACACCAGTTATTGTGCAGAAGGAGATaGTCCGTCCTTCCAGCAGAATGGAGCCCAGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: PAPSHQLLCRRR*SVLPAEWSPAV Trigger: CACTGCTGGGCTCCATTCTGCTGGAAGGACGGACAATCTCCTTCTGCACAATAACTGGTGTGAGGGGGCCGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS CCA 72 bp | CTGACTCCACCTGCTGTGAGCAGTCCAGATGAGAGGTaGTGCAGCTGTGACTTAGGGAAGTGGTGCTGGATG | + |
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Preference number: 6 (lower is better) Translates to: LTPPAVSSPDER*CSCDLGKWCWM Trigger: CATCCAGCACCACTTCCCTAAGTCACAGCTGCACCACCTCTCATCTGGACTGCTCACAGCAGGTGGAGTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451980.4 ENST00000637328.1 |
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| CDS CCA 72 bp | TTGTGCAGAAGGAGATTGTCCGTCCTTCCAGCAGAATaGAGCCCAGCAGTGCTCACCCCTTACCCATGGTCC | + |
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Preference number: 6 (lower is better) Translates to: LCRRRLSVLPAE*SPAVLTPYPWS Trigger: GGACCATGGGTAAGGGGTGAGCACTGCTGGGCTCCATTCTGCTGGAAGGACGGACAATCTCCTTCTGCACAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS GCA 72 bp | GAAGCAGGACCTGTGACAAGGGCTCATCGAATGGACTaGGACCCTCAAGGGAAGATGTTCCATAAGCTCGGC | + |
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Preference number: 6 (lower is better) Translates to: EAGPVTRAHRMD*DPQGKMFHKLG Trigger: GCCGAGCTTATGGAACATCTTCCCTTGAGGGTCGCAGTCCATTCGATGAGCCCTTGTCACAGGTCCTGCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451980.4 ENST00000637328.1 |
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| CDS CCA 72 bp | GGCTCACTCTGTCCTTTTCAGGGTTCATCCCAGAACTaGAGCTCACATTCCCAGAAGGCTTTGCTTTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: GSLCPFQGSSQN*SSHSQKALLFR Trigger: CCTGAAAAGCAAAGCCTTCTGGGAATGTGAGCTCCAGTTCTGGGATGAACCCTGAAAAGGACAGAGTGAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS CAA 90 bp | TTTCAGGGTTCATCCCAGAACTGGAGCTCACATTCCCAGAAGGCTTaGCTTTTCAGGCTTTTCAGGTTATCGCCAATTGAGGCTAAATGC | + |
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Preference number: 6 (lower is better) Translates to: FQGSSQNWSSHSQKA*LFRLFRLSPIEAKC Trigger: GCATTTAGCCTCAATTGGCGATAACCTGAAAAGCCTGAAAAGCAAAGCCTTCTGGGAATGTGAGCTCCAGTTCTGGGATGAACCCTGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS CAA 72 bp | TCATCCCAGAACTGGAGCTCACATTCCCAGAAGGCTTaGCTTTTCAGGCTTTTCAGGTTATCGCCAATTGAG | + |
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Preference number: 6 (lower is better) Translates to: SSQNWSSHSQKA*LFRLFRLSPIE Trigger: CTCAATTGGCGATAACCTGAAAAGCCTGAAAAGCAAAGCCTTCTGGGAATGTGAGCTCCAGTTCTGGGATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS TCA 72 bp | CGCCAATTGAGGCTAAATGCTCTGACGTTGTGTCTTTaGCGTGCCAAACTGTTCACTTGTTCACTGGAAACA | + |
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Preference number: 6 (lower is better) Translates to: RQLRLNALTLCL*RAKLFTCSLET Trigger: TGTTTCCAGTGAACAAGTGAACAGTTTGGCACGTCAAAGACACAACGTCAGAGCATTTAGCCTCAATTGGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS CAA 72 bp | TCGCCAATTGAGGCTAAATGCTCTGACGTTGTGTCTTaGACGTGCCAAACTGTTCACTTGTTCACTGGAAAC | + |
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Preference number: 6 (lower is better) Translates to: SPIEAKCSDVVS*TCQTVHLFTGN Trigger: GTTTCCAGTGAACAAGTGAACAGTTTGGCACGTCAAAGACACAACGTCAGAGCATTTAGCCTCAATTGGCGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451980.4 |
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| CDS CAA 72 bp | ATATTTGTTTCCTGTATACGGATTCTTACTTTTTCTTaGGCTATTTTGATCCTGACTCCACCTGCTGTGAGC | + |
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Preference number: 6 (lower is better) Translates to: IFVSCIRILTFS*AILILTPPAVS Trigger: GCTCACAGCAGGTGGAGTCAGGATCAAAATAGCCAAAGAAAAAGTAAGAATCCGTATACAGGAAACAAATAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000451980.4 ENST00000637328.1 |
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