Pregenerated sensors for LINC01546 (Homo sapiens)
Ensembl gene IDs: ENSG00000228459Ensembl transcript IDs: ENST00000457435.2, ENST00000656741.1, ENST00000668004.1, ENST00000668035.1
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTCAGGGCAGCTACAGAGGTACCACTGGACGGTGGAAAGCCACCGTaGAACGAAAGTCTCTGCGGGAATCAGCTGAGTGGCCTTGAATTA | + |
|
Preference number: 5 (lower is better) Translates to: VRAATEVPLDGGKPP*NESLCGNQLSGLEL Trigger: TAATTCAAGGCCACTCAGCTGATTCCCGCAGAGACTTTCGTTCCACGGTGGCTTTCCACCGTCCAGTGGTACCTCTGTAGCTGCCCTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CCA 90 bp | TGGAGGCTGGAAGTCCAAGATCTGGGTGCCAGCAGATCCAGGGTCTaGAAAGGACTCTCCTTTTGGTTTGCAGGTGGCTACCTTCTTGTG | + |
|
Preference number: 5 (lower is better) Translates to: WRLEVQDLGASRSRV*KGLSFWFAGGYLLV Trigger: CACAAGAAGGTAGCCACCTGCAAACCAAAAGGAGAGTCCTTTCCAGACCCTGGATCTGCTGGCACCCAGATCTTGGACTTCCAGCCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS GCA 90 bp | CTTCAATTTCTCATGGTTCTGGAGGCTGGAAGTCCAAGATCTGGGTaGCAGCAGATCCAGGGTCTGGAAAGGACTCTCCTTTTGGTTTGC | + |
|
Preference number: 5 (lower is better) Translates to: LQFLMVLEAGSPRSG*QQIQGLERTLLLVC Trigger: GCAAACCAAAAGGAGAGTCCTTTCCAGACCCTGGATCTGCTGGCACCCAGATCTTGGACTTCCAGCCTCCAGAACCATGAGAAATTGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS TCA 90 bp | GGCTTCAACATGCAGGACCTTGTCGAGTGCATTCAGAGGCTGGTTTaGTTGAAGGAGATTTTTGATGGCACAGTGAGTCAGGGCAGCTAC | + |
|
Preference number: 5 (lower is better) Translates to: GFNMQDLVECIQRLV*LKEIFDGTVSQGSY Trigger: GTAGCTGCCCTGACTCACTGTGCCATCAAAAATCTCCTTCAATCAAACCAGCCTCTGAATGCACTCGACAAGGTCCTGCATGTTGAAGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000457435.2 ENST00000656741.1 ENST00000668004.1 ENST00000668035.1 |
||
| CDS GCA 90 bp | GGGTGCCAGCAGATCCAGGGTCTGGAAAGGACTCTCCTTTTGGTTTaGAGGTGGCTACCTTCTTGTGTCTTATTCTTAAGTATCCATTGC | + |
|
Preference number: 5 (lower is better) Translates to: GCQQIQGLERTLLLV*RWLPSCVLFLSIHC Trigger: GCAATGGATACTTAAGAATAAGACACAAGAAGGTAGCCACCTGCAAACCAAAAGGAGAGTCCTTTCCAGACCCTGGATCTGCTGGCACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS GCA 90 bp | ATCCTCCTCTCAAAATGTAAGCAGCAGGCAGCTTTAGAAAGATGGTaGAGATTTGCAGATTGCAGGCTTCAACATGCAGGACCTTGTCGA | + |
|
Preference number: 5 (lower is better) Translates to: ILLSKCKQQAALERW*RFADCRLQHAGPCR Trigger: TCGACAAGGTCCTGCATGTTGAAGCCTGCAATCTGCAAATCTGCACCATCTTTCTAAAGCTGCCTGCTGCTTACATTTTGAGAGGAGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000457435.2 ENST00000656741.1 ENST00000668004.1 ENST00000668035.1 |
||
| CDS CCA 90 bp | CAGCAGATCCAGGGTCTGGAAAGGACTCTCCTTTTGGTTTGCAGGTaGCTACCTTCTTGTGTCTTATTCTTAAGTATCCATTGCTGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: QQIQGLERTLLLVCR*LPSCVLFLSIHCCV Trigger: CACACAGCAATGGATACTTAAGAATAAGACACAAGAAGGTAGCCACCTGCAAACCAAAAGGAGAGTCCTTTCCAGACCCTGGATCTGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS TCA 90 bp | CCTTGTTATGCAATAGATCACCAGAACTTATCCTTCCTGTCTAACTaGAACTTTGTACCCTTTGACCAACATACACTGCATGCCCCCATC | + |
|
Preference number: 5 (lower is better) Translates to: PCYAIDHQNLSFLSN*NFVPFDQHTLHAPI Trigger: GATGGGGGCATGCAGTGTATGTTGGTCAAAGGGTACAAAGTTTCAGTTAGACAGGAAGGATAAGTTCTGGTGATCTATTGCATAACAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS GCA 90 bp | GCAAATCTAGAATTAGAGCCGAGGTCTTGGCAGCTGCAGATATTCTaGTCTTTTTATTACTCCTTGATCCTCCTGCAGAGAGTCTTATTC | + |
|
Preference number: 5 (lower is better) Translates to: ANLELEPRSWQLQIF*SFYYSLILLQRVLF Trigger: GAATAAGACTCTCTGCAGGAGGATCAAGGAGTAATAAAAAGAGCAGAATATCTGCAGCTGCCAAGACCTCGGCTCTAATTCTAGATTTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS TCA 90 bp | AAACAAAATACCACAAGTTCTCACTTATCAGTGGGAGCTAAGCATTaGGTACACATGGACACAAAGGTGAGAACAATATACACCAACGCC | + |
|
Preference number: 5 (lower is better) Translates to: KQNTTSSHLSVGAKH*VHMDTKVRTIYTNA Trigger: GGCGTTGGTGTATATTGTTCTCACCTTTGTGTCCATGTGTACTCAATGCTTAGCTCCCACTGATAAGTGAGAACTTGTGGTATTTTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS TCA 90 bp | GTTCTTTGCGGCTACATGGATGGAGCTGGAAGCCATTATTCTAAGTaGATTAACAGAGGAACGGAACAGAAAACAAAATACCACAAGTTC | + |
|
Preference number: 5 (lower is better) Translates to: VLCGYMDGAGSHYSK*INRGTEQKTKYHKF Trigger: GAACTTGTGGTATTTTGTTTTCTGTTCCGTTCCTCTGTTAATTCACTTAGAATAATGGCTTCCAGCTCCATCCATGTAGCCGCAAAGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS TCA 90 bp | TTGGGATTCTATAATAAAACAGCATACACTGAGTGGCTAAAGCAATaGTCTTCAATTTCTCATGGTTCTGGAGGCTGGAAGTCCAAGATC | + |
|
Preference number: 5 (lower is better) Translates to: LGFYNKTAYTEWLKQ*SSISHGSGGWKSKI Trigger: GATCTTGGACTTCCAGCCTCCAGAACCATGAGAAATTGAAGATCATTGCTTTAGCCACTCAGTGTATGCTGTTTTATTATAGAATCCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS GCA 90 bp | AAAACAGAACTACCATTCGACCCATCAATCCCATTACTCAGTATATaGTCGAAGGAATATACATTGTTCTACCATAAAGACACATGCACG | + |
|
Preference number: 5 (lower is better) Translates to: KTELPFDPSIPLLSI*SKEYTLFYHKDTCT Trigger: CGTGCATGTGTCTTTATGGTAGAACAATGTATATTCCTTCGAGCATATACTGAGTAATGGGATTGATGGGTCGAATGGTAGTTCTGTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS GCA 90 bp | AGTATATGCTCGAAGGAATATACATTGTTCTACCATAAAGACACATaGACGTGTATGTTCATGGCAGCACTATTCACAATAGCAAAGGTA | + |
|
Preference number: 5 (lower is better) Translates to: SICSKEYTLFYHKDT*TCMFMAALFTIAKV Trigger: TACCTTTGCTATTGTGAATAGTGCTGCCATGAACATACACGTGCATGTGTCTTTATGGTAGAACAATGTATATTCCTTCGAGCATATACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS GCA 72 bp | GCTGTCAATAGCTGGTCCCTTGGAGTCAGACGTGGGTaGAGCTCAGCTGTGCCACTTTCCTTGGTGGTGACG | + |
|
Preference number: 6 (lower is better) Translates to: AVNSWSLGVRRG*SSAVPLSLVVT Trigger: CGTCACCACCAAGGAAAGTGGCACAGCTGAGCTGCACCCACGTCTGACTCCAAGGGACCAGCTATTGACAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CCA 72 bp | GCTACAGAGGTACCACTGGACGGTGGAAAGCCACCGTaGAACGAAAGTCTCTGCGGGAATCAGCTGAGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: ATEVPLDGGKPP*NESLCGNQLSG Trigger: GCCACTCAGCTGATTCCCGCAGAGACTTTCGTTCCACGGTGGCTTTCCACCGTCCAGTGGTACCTCTGTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CCA 72 bp | GTGAGTCAGGGCAGCTACAGAGGTACCACTGGACGGTaGAAAGCCACCGTGGAACGAAAGTCTCTGCGGGAA | + |
|
Preference number: 6 (lower is better) Translates to: VSQGSYRGTTGR*KATVERKSLRE Trigger: TTCCCGCAGAGACTTTCGTTCCACGGTGGCTTTCCACCGTCCAGTGGTACCTCTGTAGCTGCCCTGACTCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS GCA 72 bp | CTCATGGTTCTGGAGGCTGGAAGTCCAAGATCTGGGTaGCAGCAGATCCAGGGTCTGGAAAGGACTCTCCTT | + |
|
Preference number: 6 (lower is better) Translates to: LMVLEAGSPRSG*QQIQGLERTLL Trigger: AAGGAGAGTCCTTTCCAGACCCTGGATCTGCTGGCACCCAGATCTTGGACTTCCAGCCTCCAGAACCATGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS GCA 72 bp | CTGGACGGTGGAAAGCCACCGTGGAACGAAAGTCTCTaGGGGAATCAGCTGAGTGGCCTTGAATTAGAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: LDGGKPPWNESL*GNQLSGLELER Trigger: CCTTTCTAATTCAAGGCCACTCAGCTGATTCCCGCAGAGACTTTCGTTCCACGGTGGCTTTCCACCGTCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CCA 72 bp | GAAGTCCAAGATCTGGGTGCCAGCAGATCCAGGGTCTaGAAAGGACTCTCCTTTTGGTTTGCAGGTGGCTAC | + |
|
Preference number: 6 (lower is better) Translates to: EVQDLGASRSRV*KGLSFWFAGGY Trigger: GTAGCCACCTGCAAACCAAAAGGAGAGTCCTTTCCAGACCCTGGATCTGCTGGCACCCAGATCTTGGACTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS CAA 72 bp | GATCCTCCTGCAGAGAGTCTTATTCTTAAGTATCCATaGCTGTGTGGCTCTGGGGTGGCTGTGCCTCCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: DPPAESLILKYP*LCGSGVAVPPG Trigger: CCCAGGAGGCACAGCCACCCCAGAGCCACACAGCAATGGATACTTAAGAATAAGACTCTCTGCAGGAGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CAA 72 bp | TGCAGCTCAGCTGTGCCACTTTCCTTGGTGGTGACGTaGGTTCATTCTTGTGCCTATTGTGCAGCCATGGGC | + |
|
Preference number: 6 (lower is better) Translates to: CSSAVPLSLVVT*VHSCAYCAAMG Trigger: GCCCATGGCTGCACAATAGGCACAAGAATGAACCAACGTCACCACCAAGGAAAGTGGCACAGCTGAGCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CAA 90 bp | AGACGTGGGTGCAGCTCAGCTGTGCCACTTTCCTTGGTGGTGACGTaGGTTCATTCTTGTGCCTATTGTGCAGCCATGGGCTGCAAATCT | + |
|
Preference number: 6 (lower is better) Translates to: RRGCSSAVPLSLVVT*VHSCAYCAAMGCKS Trigger: AGATTTGCAGCCCATGGCTGCACAATAGGCACAAGAATGAACCAACGTCACCACCAAGGAAAGTGGCACAGCTGAGCTGCACCCACGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CCA 72 bp | ATTTCTCATGGTTCTGGAGGCTGGAAGTCCAAGATCTaGGTGCCAGCAGATCCAGGGTCTGGAAAGGACTCT | + |
|
Preference number: 6 (lower is better) Translates to: ISHGSGGWKSKI*VPADPGSGKDS Trigger: AGAGTCCTTTCCAGACCCTGGATCTGCTGGCACCCAGATCTTGGACTTCCAGCCTCCAGAACCATGAGAAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS CAA 72 bp | GTCAGACGTGGGTGCAGCTCAGCTGTGCCACTTTCCTaGGTGGTGACGTTGGTTCATTCTTGTGCCTATTGT | + |
|
Preference number: 6 (lower is better) Translates to: VRRGCSSAVPLS*VVTLVHSCAYC Trigger: ACAATAGGCACAAGAATGAACCAACGTCACCACCAAGGAAAGTGGCACAGCTGAGCTGCACCCACGTCTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CAA 72 bp | GTGGCTACCTTCTTGTGTCTTATTCTTAAGTATCCATaGCTGTGTGGCTCTGGGGTGGCTGTGCCTCCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: VATFLCLILKYP*LCGSGVAVPPG Trigger: CCCAGGAGGCACAGCCACCCCAGAGCCACACAGCAATGGATACTTAAGAATAAGACACAAGAAGGTAGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS CCA 72 bp | GCCAGCAGATCCAGGGTCTGGAAAGGACTCTCCTTTTaGTTTGCAGGTGGCTACCTTCTTGTGTCTTATTCT | + |
|
Preference number: 6 (lower is better) Translates to: ASRSRVWKGLSF*FAGGYLLVSYS Trigger: AGAATAAGACACAAGAAGGTAGCCACCTGCAAACCAAAAGGAGAGTCCTTTCCAGACCCTGGATCTGCTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS CAA 72 bp | GCAGGCAGCTTTAGAAAGATGGTGCAGATTTGCAGATaGCAGGCTTCAACATGCAGGACCTTGTCGAGTGCA | + |
|
Preference number: 6 (lower is better) Translates to: AGSFRKMVQICR*QASTCRTLSSA Trigger: TGCACTCGACAAGGTCCTGCATGTTGAAGCCTGCAATCTGCAAATCTGCACCATCTTTCTAAAGCTGCCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000457435.2 ENST00000656741.1 ENST00000668004.1 ENST00000668035.1 |
||
| CDS CAA 90 bp | GGGTCTGGAAAGGACTCTCCTTTTGGTTTGCAGGTGGCTACCTTCTaGTGTCTTATTCTTAAGTATCCATTGCTGTGTGGCTCTGGGGTG | + |
|
Preference number: 6 (lower is better) Translates to: GSGKDSPFGLQVATF*CLILKYPLLCGSGV Trigger: CACCCCAGAGCCACACAGCAATGGATACTTAAGAATAAGACACAAGAAGGTAGCCACCTGCAAACCAAAAGGAGAGTCCTTTCCAGACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS GCA 72 bp | AAGATGGTGCAGATTTGCAGATTGCAGGCTTCAACATaGAGGACCTTGTCGAGTGCATTCAGAGGCTGGTTT | + |
|
Preference number: 6 (lower is better) Translates to: KMVQICRLQAST*RTLSSAFRGWF Trigger: AAACCAGCCTCTGAATGCACTCGACAAGGTCCTGCATGTTGAAGCCTGCAATCTGCAAATCTGCACCATCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000457435.2 ENST00000656741.1 ENST00000668004.1 ENST00000668035.1 |
||
| CDS CCA 72 bp | GTGGCTAAAGCAATGATCTTCAATTTCTCATGGTTCTaGAGGCTGGAAGTCCAAGATCTGGGTGCCAGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: VAKAMIFNFSWF*RLEVQDLGASR Trigger: TCTGCTGGCACCCAGATCTTGGACTTCCAGCCTCCAGAACCATGAGAAATTGAAGATCATTGCTTTAGCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS CAA 90 bp | TGGGTGCCAGCAGATCCAGGGTCTGGAAAGGACTCTCCTTTTGGTTaGCAGGTGGCTACCTTCTTGTGTCTTATTCTTAAGTATCCATTG | + |
|
Preference number: 6 (lower is better) Translates to: WVPADPGSGKDSPFG*QVATFLCLILKYPL Trigger: CAATGGATACTTAAGAATAAGACACAAGAAGGTAGCCACCTGCAAACCAAAAGGAGAGTCCTTTCCAGACCCTGGATCTGCTGGCACCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS GCA 72 bp | TCAAAATGTAAGCAGCAGGCAGCTTTAGAAAGATGGTaGAGATTTGCAGATTGCAGGCTTCAACATGCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: SKCKQQAALERW*RFADCRLQHAG Trigger: TCCTGCATGTTGAAGCCTGCAATCTGCAAATCTGCACCATCTTTCTAAAGCTGCCTGCTGCTTACATTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000457435.2 ENST00000656741.1 ENST00000668004.1 ENST00000668035.1 |
||
| CDS CAA 72 bp | AAGGACTCTCCTTTTGGTTTGCAGGTGGCTACCTTCTaGTGTCTTATTCTTAAGTATCCATTGCTGTGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: KDSPFGLQVATF*CLILKYPLLCG Trigger: GCCACACAGCAATGGATACTTAAGAATAAGACACAAGAAGGTAGCCACCTGCAAACCAAAAGGAGAGTCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS CAA 72 bp | ATCACCAGAACTTATCCTTCCTGTCTAACTGAAACTTaGTACCCTTTGACCAACATACACTGCATGCCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: ITRTYPSCLTET*YPLTNIHCMPP Trigger: TGGGGGCATGCAGTGTATGTTGGTCAAAGGGTACAAAGTTTCAGTTAGACAGGAAGGATAAGTTCTGGTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS TCA 72 bp | ACCACAAGTTCTCACTTATCAGTGGGAGCTAAGCATTaGGTACACATGGACACAAAGGTGAGAACAATATAC | + |
|
Preference number: 6 (lower is better) Translates to: TTSSHLSVGAKH*VHMDTKVRTIY Trigger: GTATATTGTTCTCACCTTTGTGTCCATGTGTACTCAATGCTTAGCTCCCACTGATAAGTGAGAACTTGTGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS TCA 72 bp | TCAAACATAGATGAAACTGGAGGTCATGATGTTAAGTaGAGTAAGCCAGCCACTGGAAGACAGTGCATATTC | + |
|
Preference number: 6 (lower is better) Translates to: SNIDETGGHDVK*SKPATGRQCIF Trigger: GAATATGCACTGTCTTCCAGTGGCTGGCTTACTTCACTTAACATCATGACCTCCAGTTTCATCTATGTTTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000656741.1 ENST00000668004.1 ENST00000668035.1 |
||
| CDS TCA 72 bp | CAGGAGGATTTCCATAGATGGTGTTTTCCAAAGTGGTaGCTAGTTCTTGATCAGGTTCTGATCAAGGCAATT | + |
|
Preference number: 6 (lower is better) Translates to: QEDFHRWCFPKW*LVLDQVLIKAI Trigger: AATTGCCTTGATCAGAACCTGATCAAGAACTAGTCACCACTTTGGAAAACACCATCTATGGAAATCCTCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656741.1 ENST00000668004.1 ENST00000668035.1 |
||
| CDS GCA 72 bp | CTAGTTCTTGATCAGGTTCTGATCAAGGCAATTGACTaGAGTCCTGTTTCCACTCTTTTGCTTTCTTGTGAA | + |
|
Preference number: 6 (lower is better) Translates to: LVLDQVLIKAID*SPVSTLLLSCE Trigger: TTCACAAGAAAGCAAAAGAGTGGAAACAGGACTGCAGTCAATTGCCTTGATCAGAACCTGATCAAGAACTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656741.1 ENST00000668004.1 ENST00000668035.1 |
||
| CDS CAA 72 bp | AGAAACAGGATAATATTCCTCCCTGCCTCTGTCCACTaGGGATTCTATAATAAAACAGCATACACTGAGTGG | + |
|
Preference number: 6 (lower is better) Translates to: RNRIIFLPASVH*GFYNKTAYTEW Trigger: CCACTCAGTGTATGCTGTTTTATTATAGAATCCCAAGTGGACAGAGGCAGGGAGGAATATTATCCTGTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656741.1 ENST00000668004.1 |
||
| CDS CAA 90 bp | GACCCATCAATCCCATTACTCAGTATATGCTCGAAGGAATATACATaGTTCTACCATAAAGACACATGCACGTGTATGTTCATGGCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: DPSIPLLSICSKEYT*FYHKDTCTCMFMAA Trigger: TGCTGCCATGAACATACACGTGCATGTGTCTTTATGGTAGAACAATGTATATTCCTTCGAGCATATACTGAGTAATGGGATTGATGGGTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CCA 72 bp | ACAGAAAACAAAATACCACAAGTTCTCACTTATCAGTaGGAGCTAAGCATTGAGTACACATGGACACAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: TENKIPQVLTYQ*ELSIEYTWTQR Trigger: CCTTTGTGTCCATGTGTACTCAATGCTTAGCTCCCACTGATAAGTGAGAACTTGTGGTATTTTGTTTTCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CAA 72 bp | GGTGATGAAATAATCTGTACACCAAACCCCCGTGACTaGCAATTTATCTATTTAACAAACCTGTACATGAAC | + |
|
Preference number: 6 (lower is better) Translates to: GDEIICTPNPRD*QFIYLTNLYMN Trigger: GTTCATGTACAGGTTTGTTAAATAGATAAATTGCAAGTCACGGGGGTTTGGTGTACAGATTATTTCATCACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS CAA 90 bp | TATTATCTGGGTGATGAAATAATCTGTACACCAAACCCCCGTGACTaGCAATTTATCTATTTAACAAACCTGTACATGAACTCTCTGAAC | + |
|
Preference number: 6 (lower is better) Translates to: YYLGDEIICTPNPRD*QFIYLTNLYMNSLN Trigger: GTTCAGAGAGTTCATGTACAGGTTTGTTAAATAGATAAATTGCAAGTCACGGGGGTTTGGTGTACAGATTATTTCATCACCCAGATAATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||
| CDS TCA 72 bp | GTAAGGAATCAACTTAGATGCCTATTAAGAGCAGACTaGATAAAGAAAATGTGGTGCATATACACCATGGAA | + |
|
Preference number: 6 (lower is better) Translates to: VRNQLRCLLRAD*IKKMWCIYTME Trigger: TTCCATGGTGTATATGCACCACATTTTCTTTATTCAGTCTGCTCTTAATAGGCATCTAAGTTGATTCCTTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457435.2 |
||