Pregenerated sensors for LINC01543 (Homo sapiens)
Ensembl gene IDs: ENSG00000263862Ensembl transcript IDs: ENST00000578367.1, ENST00000653430.1, ENST00000660990.1
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGGATTGCCCTGCCCCCGAATTTCCTGGTTCCCTTCACTGGACTCTaGCAGGAAGAGTTCCCTGTTAGAATCATCTCTGGGACATGTTGC | + |
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Preference number: 5 (lower is better) Translates to: GIALPPNFLVPFTGL*QEEFPVRIISGTCC Trigger: GCAACATGTCCCAGAGATGATTCTAACAGGGAACTCTTCCTGGCAGAGTCCAGTGAAGGGAACCAGGAAATTCGGGGGCAGGGCAATCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CCA 90 bp | TCTCACCTGACAGAGAGAGTGGGATTGCCCTGCCCCCGAATTTCCTaGTTCCCTTCACTGGACTCTGCCAGGAAGAGTTCCCTGTTAGAA | + |
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Preference number: 5 (lower is better) Translates to: SHLTERVGLPCPRIS*FPSLDSARKSSLLE Trigger: TTCTAACAGGGAACTCTTCCTGGCAGAGTCCAGTGAAGGGAACCAGGAAATTCGGGGGCAGGGCAATCCCACTCTCTCTGTCAGGTGAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS TCA 90 bp | AAAGTAAGATGCCTGAACTCAAACCACTGCGCAGGTGATCTCACCTaGCAGAGAGAGTGGGATTGCCCTGCCCCCGAATTTCCTGGTTCC | + |
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Preference number: 5 (lower is better) Translates to: KVRCLNSNHCAGDLT*QREWDCPAPEFPGS Trigger: GGAACCAGGAAATTCGGGGGCAGGGCAATCCCACTCTCTCTGTCAGGTGAGATCACCTGCGCAGTGGTTTGAGTTCAGGCATCTTACTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS TCA 90 bp | CTATGGGCAGCCTTCTGGACTATTCTCCATGGGCTGGTGCTCATCTaGGTTCAGGTTATGGTGGAAATAGCCTGGTTCACAGGTGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LWAAFWTILHGLVLI*VQVMVEIAWFTGVE Trigger: CTCCACACCTGTGAACCAGGCTATTTCCACCATAACCTGAACTCAGATGAGCACCAGCCCATGGAGAATAGTCCAGAAGGCTGCCCATAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS CCA 90 bp | CCCAGGTGGACCTACCTTGTCCATGCACACATTCCCGAAGTGACTTaGAGCAATTTTCTCAACCTGCCTGCATCTCACATTTCTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: PRWTYLVHAHIPEVT*SNFLNLPASHISLL Trigger: CAGAAGAGAAATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGTAGGTCCACCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS TCA 90 bp | ACAATCCCAGGTGGACCTACCTTGTCCATGCACACATTCCCGAAGTaGCTTGGAGCAATTTTCTCAACCTGCCTGCATCTCACATTTCTC | + |
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Preference number: 5 (lower is better) Translates to: TIPGGPTLSMHTFPK*LGAIFSTCLHLTFL Trigger: GAGAAATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGTAGGTCCACCTGGGATTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS GCA 90 bp | CTCTGCCAGGAAGAGTTCCCTGTTAGAATCATCTCTGGGACATGTTaGCCATCTCCTAGACAAGTGGTGGTTAAACACCCACTCTTTGGT | + |
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Preference number: 5 (lower is better) Translates to: LCQEEFPVRIISGTC*PSPRQVVVKHPLFG Trigger: ACCAAAGAGTGGGTGTTTAACCACCACTTGTCTAGGAGATGGGCAACATGTCCCAGAGATGATTCTAACAGGGAACTCTTCCTGGCAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS GCA 90 bp | AAACACCCACTCTTTGGTGAAATATCTCATGCTGTCATCTCTGCCTaGAACCGCTCATCCCTAACCACTCACTTTCAAGAAAGGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: KHPLFGEISHAVISA*NRSSLTTHFQEREE Trigger: CTCCTCCCTTTCTTGAAAGTGAGTGGTTAGGGATGAGCGGTTGCAGGCAGAGATGACAGCATGAGATATTTCACCAAAGAGTGGGTGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CCA 90 bp | GCTTTAAGCCTTGGTTTTCACACCTTGTACCATTCTTCCAGTCTCTaGGAGGAGCTTCTTTGTCTGTTCCCAGTACAGGGCCTTGGAATA | + |
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Preference number: 5 (lower is better) Translates to: ALSLGFHTLYHSSSL*EELLCLFPVQGLGI Trigger: TATTCCAAGGCCCTGTACTGGGAACAGACAAAGAAGCTCCTCCCAGAGACTGGAAGAATGGTACAAGGTGTGAAAACCAAGGCTTAAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS CCA 90 bp | GGATCTTCCTGCTTCCTTGTCCATGCACACATTCCCGAAGTGACTTaGAGCAATTTTCTCAACCTGCCTGCATCTCACATTTCTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: GSSCFLVHAHIPEVT*SNFLNLPASHISLL Trigger: CAGAAGAGAAATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGAAGCAGGAAGATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660990.1 |
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| CDS GCA 90 bp | GGAGAGAGTGAGTTATTAGGAAATAATCCTGAATACACCCAGGCCTaGTGTCTCTCCCATCTTTCCAATCCAAGTTCAGCCTTGGGCATA | + |
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Preference number: 5 (lower is better) Translates to: GESELLGNNPEYTQA*CLSHLSNPSSALGI Trigger: TATGCCCAAGGCTGAACTTGGATTGGAAAGATGGGAGAGACAGCAGGCCTGGGTGTATTCAGGATTATTTCCTAATAACTCACTCTCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS CCA 90 bp | TTTTCACAGAACCCAGGTTTGATGGGAAATCTGTGTTTTCTGACTTaGCCCTGTGTTGATCTTGCAGCTGAACAATCCCAGGTGGACCTA | + |
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Preference number: 5 (lower is better) Translates to: FSQNPGLMGNLCFLT*PCVDLAAEQSQVDL Trigger: TAGGTCCACCTGGGATTGTTCAGCTGCAAGATCAACACAGGGCCAAGTCAGAAAACACAGATTTCCCATCAAACCTGGGTTCTGTGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS CCA 90 bp | CTGTTAGAATCATCTCTGGGACATGTTGCCCATCTCCTAGACAAGTaGTGGTTAAACACCCACTCTTTGGTGAAATATCTCATGCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: LLESSLGHVAHLLDK*WLNTHSLVKYLMLS Trigger: TGACAGCATGAGATATTTCACCAAAGAGTGGGTGTTTAACCACCACTTGTCTAGGAGATGGGCAACATGTCCCAGAGATGATTCTAACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CCA 90 bp | TTAGAATCATCTCTGGGACATGTTGCCCATCTCCTAGACAAGTGGTaGTTAAACACCCACTCTTTGGTGAAATATCTCATGCTGTCATCT | + |
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Preference number: 5 (lower is better) Translates to: LESSLGHVAHLLDKW*LNTHSLVKYLMLSS Trigger: AGATGACAGCATGAGATATTTCACCAAAGAGTGGGTGTTTAACCACCACTTGTCTAGGAGATGGGCAACATGTCCCAGAGATGATTCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS GCA 90 bp | TGCACACATTCCCGAAGTGACTTGGAGCAATTTTCTCAACCTGCCTaGATCTCACATTTCTCTTCTGATAATCCAGAATATAACACTCAT | + |
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Preference number: 5 (lower is better) Translates to: CTHSRSDLEQFSQPA*ISHFSSDNPEYNTH Trigger: ATGAGTGTTATATTCTGGATTATCAGAAGAGAAATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS TCA 90 bp | CCAGCTCCACAAATATTTGATGGAAGAAAGAAATGGAAGAAAGCCTaGAGGAAGAAAATGAAGAAGCAAGGGAGAGGGAGAGAAAAACTA | + |
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Preference number: 5 (lower is better) Translates to: PAPQIFDGRKKWKKA*RKKMKKQGRGREKL Trigger: TAGTTTTTCTCTCCCTCTCCCTTGCTTCTTCATTTTCTTCCTTCAGGCTTTCTTCCATTTCTTTCTTCCATCAAATATTTGTGGAGCTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS CCA 72 bp | ACAGAGAGAGTGGGATTGCCCTGCCCCCGAATTTCCTaGTTCCCTTCACTGGACTCTGCCAGGAAGAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: TERVGLPCPRIS*FPSLDSARKSS Trigger: GGAACTCTTCCTGGCAGAGTCCAGTGAAGGGAACCAGGAAATTCGGGGGCAGGGCAATCCCACTCTCTCTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS TCA 72 bp | TGCCTGAACTCAAACCACTGCGCAGGTGATCTCACCTaGCAGAGAGAGTGGGATTGCCCTGCCCCCGAATTT | + |
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Preference number: 6 (lower is better) Translates to: CLNSNHCAGDLT*QREWDCPAPEF Trigger: AAATTCGGGGGCAGGGCAATCCCACTCTCTCTGTCAGGTGAGATCACCTGCGCAGTGGTTTGAGTTCAGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS GCA 72 bp | CTGCCCCCGAATTTCCTGGTTCCCTTCACTGGACTCTaGCAGGAAGAGTTCCCTGTTAGAATCATCTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: LPPNFLVPFTGL*QEEFPVRIISG Trigger: CCCAGAGATGATTCTAACAGGGAACTCTTCCTGGCAGAGTCCAGTGAAGGGAACCAGGAAATTCGGGGGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CCA 72 bp | GGCCCTGTGTTGATCTTGCAGCTGAACAATCCCAGGTaGACCTACCTTGTCCATGCACACATTCCCGAAGTG | + |
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Preference number: 6 (lower is better) Translates to: GPVLILQLNNPR*TYLVHAHIPEV Trigger: CACTTCGGGAATGTGTGCATGGACAAGGTAGGTCCACCTGGGATTGTTCAGCTGCAAGATCAACACAGGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS TCA 72 bp | GAAAGTAAGATGCCTGAACTCAAACCACTGCGCAGGTaGTCTCACCTGACAGAGAGAGTGGGATTGCCCTGC | + |
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Preference number: 6 (lower is better) Translates to: ESKMPELKPLRR*SHLTERVGLPC Trigger: GCAGGGCAATCCCACTCTCTCTGTCAGGTGAGATCACCTGCGCAGTGGTTTGAGTTCAGGCATCTTACTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CAA 72 bp | GGGAGGAGCTTCTTTGTCTGTTCCCAGTACAGGGCCTaGGAATATGATAGTGAAGCCCAGTTCCAGCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: GRSFFVCSQYRA*EYDSEAQFQLH Trigger: GTGGAGCTGGAACTGGGCTTCACTATCATATTCCAAGGCCCTGTACTGGGAACAGACAAAGAAGCTCCTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS TCA 72 bp | GGTGGACCTACCTTGTCCATGCACACATTCCCGAAGTaGCTTGGAGCAATTTTCTCAACCTGCCTGCATCTC | + |
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Preference number: 6 (lower is better) Translates to: GGPTLSMHTFPK*LGAIFSTCLHL Trigger: GAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGTAGGTCCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS CCA 72 bp | GGAGGAGCTTCTTTGTCTGTTCCCAGTACAGGGCCTTaGAATATGATAGTGAAGCCCAGTTCCAGCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: GGASLSVPSTGP*NMIVKPSSSST Trigger: TGTGGAGCTGGAACTGGGCTTCACTATCATATTCCAAGGCCCTGTACTGGGAACAGACAAAGAAGCTCCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS TCA 72 bp | GCCTTCTGGACTATTCTCCATGGGCTGGTGCTCATCTaGGTTCAGGTTATGGTGGAAATAGCCTGGTTCACA | + |
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Preference number: 6 (lower is better) Translates to: AFWTILHGLVLI*VQVMVEIAWFT Trigger: TGTGAACCAGGCTATTTCCACCATAACCTGAACTCAGATGAGCACCAGCCCATGGAGAATAGTCCAGAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS TCA 72 bp | CTTCCTGCTTCCTTGTCCATGCACACATTCCCGAAGTaGCTTGGAGCAATTTTCTCAACCTGCCTGCATCTC | + |
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Preference number: 6 (lower is better) Translates to: LPASLSMHTFPK*LGAIFSTCLHL Trigger: GAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGAAGCAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660990.1 |
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| CDS GCA 72 bp | GCAGCTGAACAATCCCAGGTGGACCTACCTTGTCCATaGACACATTCCCGAAGTGACTTGGAGCAATTTTCT | + |
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Preference number: 6 (lower is better) Translates to: AAEQSQVDLPCP*THSRSDLEQFS Trigger: AGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGTAGGTCCACCTGGGATTGTTCAGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS CAA 90 bp | CCAGTCTCTGGGAGGAGCTTCTTTGTCTGTTCCCAGTACAGGGCCTaGGAATATGATAGTGAAGCCCAGTTCCAGCTCCACAAATATTTG | + |
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Preference number: 6 (lower is better) Translates to: PVSGRSFFVCSQYRA*EYDSEAQFQLHKYL Trigger: CAAATATTTGTGGAGCTGGAACTGGGCTTCACTATCATATTCCAAGGCCCTGTACTGGGAACAGACAAAGAAGCTCCTCCCAGAGACTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS CAA 90 bp | TCCCAGGTGGACCTACCTTGTCCATGCACACATTCCCGAAGTGACTaGGAGCAATTTTCTCAACCTGCCTGCATCTCACATTTCTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SQVDLPCPCTHSRSD*EQFSQPACISHFSS Trigger: AGAAGAGAAATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGTAGGTCCACCTGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS CAA 72 bp | TGGTTCACAGGTGTGGAGCAGACCCAGCTTCTTCATTaGTGGCTGAAAAACCTCGGGCAAATAACTTGCATG | + |
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Preference number: 6 (lower is better) Translates to: WFTGVEQTQLLH*WLKNLGQITCM Trigger: CATGCAAGTTATTTGCCCGAGGTTTTTCAGCCACAAATGAAGAAGCTGGGTCTGCTCCACACCTGTGAACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS CAA 72 bp | GACCTACCTTGTCCATGCACACATTCCCGAAGTGACTaGGAGCAATTTTCTCAACCTGCCTGCATCTCACAT | + |
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Preference number: 6 (lower is better) Translates to: DLPCPCTHSRSD*EQFSQPACISH Trigger: ATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGTAGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS CAA 72 bp | CTGCTTCCTTGTCCATGCACACATTCCCGAAGTGACTaGGAGCAATTTTCTCAACCTGCCTGCATCTCACAT | + |
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Preference number: 6 (lower is better) Translates to: LLPCPCTHSRSD*EQFSQPACISH Trigger: ATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGAAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660990.1 |
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| CDS CAA 90 bp | CATGTTGCCCATCTCCTAGACAAGTGGTGGTTAAACACCCACTCTTaGGTGAAATATCTCATGCTGTCATCTCTGCCTGCAACCGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: HVAHLLDKWWLNTHS*VKYLMLSSLPATAH Trigger: ATGAGCGGTTGCAGGCAGAGATGACAGCATGAGATATTTCACCAAAGAGTGGGTGTTTAACCACCACTTGTCTAGGAGATGGGCAACATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CAA 90 bp | GGGATCTTCCTGCTTCCTTGTCCATGCACACATTCCCGAAGTGACTaGGAGCAATTTTCTCAACCTGCCTGCATCTCACATTTCTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: GIFLLPCPCTHSRSD*EQFSQPACISHFSS Trigger: AGAAGAGAAATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGAAGCAGGAAGATCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660990.1 |
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| CDS CAA 90 bp | CCTCGGGCAAATAACTTGCATGCTTTAAGCCTTGGTTTTCACACCTaGTACCATTCTTCCAGTCTCTGGGAGGAGCTTCTTTGTCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: PRANNLHALSLGFHT*YHSSSLWEELLCLF Trigger: GAACAGACAAAGAAGCTCCTCCCAGAGACTGGAAGAATGGTACAAGGTGTGAAAACCAAGGCTTAAAGCATGCAAGTTATTTGCCCGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS GCA 72 bp | GAAGAGTTCCCTGTTAGAATCATCTCTGGGACATGTTaGCCATCTCCTAGACAAGTGGTGGTTAAACACCCA | + |
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Preference number: 6 (lower is better) Translates to: EEFPVRIISGTC*PSPRQVVVKHP Trigger: TGGGTGTTTAACCACCACTTGTCTAGGAGATGGGCAACATGTCCCAGAGATGATTCTAACAGGGAACTCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CCA 72 bp | ACCTACCTTGTCCATGCACACATTCCCGAAGTGACTTaGAGCAATTTTCTCAACCTGCCTGCATCTCACATT | + |
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Preference number: 6 (lower is better) Translates to: TYLVHAHIPEVT*SNFLNLPASHI Trigger: AATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGTAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS CCA 72 bp | AACCCAGGTTTGATGGGAAATCTGTGTTTTCTGACTTaGCCCTGTGTTGATCTTGCAGCTGAACAATCCCAG | + |
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Preference number: 6 (lower is better) Translates to: NPGLMGNLCFLT*PCVDLAAEQSQ Trigger: CTGGGATTGTTCAGCTGCAAGATCAACACAGGGCCAAGTCAGAAAACACAGATTTCCCATCAAACCTGGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS CCA 72 bp | TGCTTCCTTGTCCATGCACACATTCCCGAAGTGACTTaGAGCAATTTTCTCAACCTGCCTGCATCTCACATT | + |
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Preference number: 6 (lower is better) Translates to: CFLVHAHIPEVT*SNFLNLPASHI Trigger: AATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGAATGTGTGCATGGACAAGGAAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660990.1 |
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| CDS GCA 72 bp | GAGTTATTAGGAAATAATCCTGAATACACCCAGGCCTaGTGTCTCTCCCATCTTTCCAATCCAAGTTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: ELLGNNPEYTQA*CLSHLSNPSSA Trigger: GGCTGAACTTGGATTGGAAAGATGGGAGAGACAGCAGGCCTGGGTGTATTCAGGATTATTTCCTAATAACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS GCA 72 bp | CTCTTTGGTGAAATATCTCATGCTGTCATCTCTGCCTaGAACCGCTCATCCCTAACCACTCACTTTCAAGAA | + |
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Preference number: 6 (lower is better) Translates to: LFGEISHAVISA*NRSSLTTHFQE Trigger: TTCTTGAAAGTGAGTGGTTAGGGATGAGCGGTTGCAGGCAGAGATGACAGCATGAGATATTTCACCAAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CCA 72 bp | TCTCTGGGACATGTTGCCCATCTCCTAGACAAGTGGTaGTTAAACACCCACTCTTTGGTGAAATATCTCATG | + |
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Preference number: 6 (lower is better) Translates to: SLGHVAHLLDKW*LNTHSLVKYLM Trigger: CATGAGATATTTCACCAAAGAGTGGGTGTTTAACCACCACTTGTCTAGGAGATGGGCAACATGTCCCAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CCA 72 bp | TCATCTCTGGGACATGTTGCCCATCTCCTAGACAAGTaGTGGTTAAACACCCACTCTTTGGTGAAATATCTC | + |
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Preference number: 6 (lower is better) Translates to: SSLGHVAHLLDK*WLNTHSLVKYL Trigger: GAGATATTTCACCAAAGAGTGGGTGTTTAACCACCACTTGTCTAGGAGATGGGCAACATGTCCCAGAGATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CAA 72 bp | TCCAAGTTCAGCCTTGGGCATAGATTTAAAACGACATaGTTCCGGAGGTGGTCTTCAAATGCAACAGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: SKFSLGHRFKTT*FRRWSSNATGC Trigger: ACAGCCTGTTGCATTTGAAGACCACCTCCGGAACAATGTCGTTTTAAATCTATGCCCAAGGCTGAACTTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS CAA 72 bp | CATCTCCTAGACAAGTGGTGGTTAAACACCCACTCTTaGGTGAAATATCTCATGCTGTCATCTCTGCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: HLLDKWWLNTHS*VKYLMLSSLPA Trigger: TGCAGGCAGAGATGACAGCATGAGATATTTCACCAAAGAGTGGGTGTTTAACCACCACTTGTCTAGGAGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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| CDS CAA 72 bp | AATAACTTGCATGCTTTAAGCCTTGGTTTTCACACCTaGTACCATTCTTCCAGTCTCTGGGAGGAGCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: NNLHALSLGFHT*YHSSSLWEELL Trigger: AAGAAGCTCCTCCCAGAGACTGGAAGAATGGTACAAGGTGTGAAAACCAAGGCTTAAAGCATGCAAGTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS GCA 72 bp | TCCCGAAGTGACTTGGAGCAATTTTCTCAACCTGCCTaGATCTCACATTTCTCTTCTGATAATCCAGAATAT | + |
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Preference number: 6 (lower is better) Translates to: SRSDLEQFSQPA*ISHFSSDNPEY Trigger: ATATTCTGGATTATCAGAAGAGAAATGTGAGATGCAGGCAGGTTGAGAAAATTGCTCCAAGTCACTTCGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000578367.1 ENST00000653430.1 ENST00000660990.1 |
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| CDS CAA 72 bp | GTTTCCATTAAGATCTTATTTTCACAGAACCCAGGTTaGATGGGAAATCTGTGTTTTCTGACTTGGCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: VSIKILFSQNPG*MGNLCFLTWPC Trigger: ACAGGGCCAAGTCAGAAAACACAGATTTCCCATCAAACCTGGGTTCTGTGAAAATAAGATCTTAATGGAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000578367.1 ENST00000653430.1 |
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| CDS GCA 72 bp | ATCCTGACTAAAACTAAAAGAACCCTCTTCTGTGTGTaGAAAGTTCGTAGAAACTTCTGTTGTAGTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: ILTKTKRTLFCV*KVRRNFCCSLL Trigger: AAGAAGACTACAACAGAAGTTTCTACGAACTTTGCACACACAGAAGAGGGTTCTTTTAGTTTTAGTCAGGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000660990.1 |
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| CDS TCA 72 bp | TCTCTTCTGATAATCCAGAATATAACACTCATTTTGTaGGGCTGCTGTAAGAATAAAAAGACGCATACACAG | + |
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Preference number: 6 (lower is better) Translates to: SLLIIQNITLIL*GCCKNKKTHTQ Trigger: CTGTGTATGCGTCTTTTTATTCTTACAGCAGCCTCACAAAATGAGTGTTATATTCTGGATTATCAGAAGAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000653430.1 |
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