Pregenerated sensors for LINC01541 (Homo sapiens)
Ensembl gene IDs: ENSG00000260676Ensembl transcript IDs: ENST00000566582.1, ENST00000568095.5
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAAATCAGGAACAGCCCTCCCTGGACTCTGAATCTGCTGGCTCCTTaGTCTTGGACTTACCCACATCAGACAATGGAGGACTCACCACCA | + |
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Preference number: 5 (lower is better) Translates to: QIRNSPPWTLNLLAP*SWTYPHQTMEDSPP Trigger: TGGTGGTGAGTCCTCCATTGTCTGATGTGGGTAAGTCCAAGACCAAGGAGCCAGCAGATTCAGAGTCCAGGGAGGGCTGTTCCTGATTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 90 bp | CCTCCCAGCCTACATCTATCTCCTGTGCTGGATGCTTCCTGCCCTTaGACATTGAACTCCAAGTTTGTCATCTTTGGGATTCAGACTGGC | + |
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Preference number: 5 (lower is better) Translates to: PPSLHLSPVLDASCP*TLNSKFVIFGIQTG Trigger: GCCAGTCTGAATCCCAAAGATGACAAACTTGGAGTTCAATGTTCAAGGGCAGGAAGCATCCAGCACAGGAGATAGATGTAGGCTGGGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 90 bp | GCCTACATCTATCTCCTGTGCTGGATGCTTCCTGCCCTTGAACATTaGACTCCAAGTTTGTCATCTTTGGGATTCAGACTGGCTTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: AYIYLLCWMLPALEH*TPSLSSLGFRLASL Trigger: CAAGGAAGCCAGTCTGAATCCCAAAGATGACAAACTTGGAGTTCAATGTTCAAGGGCAGGAAGCATCCAGCACAGGAGATAGATGTAGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 90 bp | TCACCTATGTCCTGTATCTTCCAAGCTACAGGCTTCACAATCTTGTaGAGACATAAAGAGAAGGCGCCATCTGCAAATCAGGAACAGCCC | + |
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Preference number: 5 (lower is better) Translates to: SPMSCIFQATGFTIL*RHKEKAPSANQEQP Trigger: GGGCTGTTCCTGATTTGCAGATGGCGCCTTCTCTTTATGTCTTCACAAGATTGTGAAGCCTGTAGCTTGGAAGATACAGGACATAGGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 90 bp | CTTGTTCCTCAGCTTACAGATGGCCCGGCCTGTTGTGGGACCTTGTaGTTGTGTGAGTTAATACTCCTTAATAAACTCCCTTTTATTTAT | + |
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Preference number: 5 (lower is better) Translates to: LVPQLTDGPACCGTL*LCELILLNKLPFIY Trigger: ATAAATAAAAGGGAGTTTATTAAGGAGTATTAACTCACACAATCACAAGGTCCCACAACAGGCCGGGCCATCTGTAAGCTGAGGAACAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 90 bp | TGCATGTATCACAAGATGGCCCCATTGGACATTTATGCCTTTAAATaGATGGTACAAACACTTTCACCTATGTCCTGTATCTTCCAAGCT | + |
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Preference number: 5 (lower is better) Translates to: CMYHKMAPLDIYAFK*MVQTLSPMSCIFQA Trigger: AGCTTGGAAGATACAGGACATAGGTGAAAGTGTTTGTACCATTCATTTAAAGGCATAAATGTCCAATGGGGCCATCTTGTGATACATGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566582.1 |
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| CDS TCA 90 bp | ATTAGCTTTGACCTTTATGACCCATTGGACATTTATGCCTTTAAATaGATGGTACAAACACTTTCACCTATGTCCTGTATCTTCCAAGCT | + |
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Preference number: 5 (lower is better) Translates to: ISFDLYDPLDIYAFK*MVQTLSPMSCIFQA Trigger: AGCTTGGAAGATACAGGACATAGGTGAAAGTGTTTGTACCATTCATTTAAAGGCATAAATGTCCAATGGGTCATAAAGGTCAAAGCTAAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568095.5 |
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| CDS GCA 90 bp | CTTCTGTCTGAAAATTGTGTATTTGTATTCACAGATACCCACAAATaGACATCTATCCACATGATTTTGTACACATACGCATTTCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: LLSENCVFVFTDTHK*TSIHMILYTYAFLP Trigger: AGGAAGAAATGCGTATGTGTACAAAATCATGTGGATAGATGTGCATTTGTGGGTATCTGTGAATACAAATACACAATTTTCAGACAGAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS CCA 72 bp | ATGGAGGACTCACCACCAGACCGGGAAGCAACAGCCTaGGCTCCAGAGTCGGCTGGACACTCTGTGTCCGGC | + |
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Preference number: 6 (lower is better) Translates to: MEDSPPDREATA*APESAGHSVSG Trigger: GCCGGACACAGAGTGTCCAGCCGACTCTGGAGCCCAGGCTGTTGCTTCCCGGTCTGGTGGTGAGTCCTCCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 72 bp | GGCTCCTCTTTCGTGCACAGACGAGGAGAGGTCTCATaGAGCTTCAGCACAGTCTGGGATCCTGGCTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: GSSFVHRRGEVS*SFSTVWDPGSF Trigger: GAAAGAGCCAGGATCCCAGACTGTGCTGAAGCTTCATGAGACCTCTCCTCGTCTGTGCACGAAAGAGGAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568095.5 |
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| CDS CAA 90 bp | GCAAATCAGGAACAGCCCTCCCTGGACTCTGAATCTGCTGGCTCCTaGGTCTTGGACTTACCCACATCAGACAATGGAGGACTCACCACC | + |
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Preference number: 6 (lower is better) Translates to: ANQEQPSLDSESAGS*VLDLPTSDNGGLTT Trigger: GGTGGTGAGTCCTCCATTGTCTGATGTGGGTAAGTCCAAGACCAAGGAGCCAGCAGATTCAGAGTCCAGGGAGGGCTGTTCCTGATTTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS CAA 90 bp | GCCTCCCAGCCTACATCTATCTCCTGTGCTGGATGCTTCCTGCCCTaGAACATTGAACTCCAAGTTTGTCATCTTTGGGATTCAGACTGG | + |
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Preference number: 6 (lower is better) Translates to: ASQPTSISCAGCFLP*NIELQVCHLWDSDW Trigger: CCAGTCTGAATCCCAAAGATGACAAACTTGGAGTTCAATGTTCAAGGGCAGGAAGCATCCAGCACAGGAGATAGATGTAGGCTGGGAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS CAA 72 bp | TGTGTCTGTGAGGGTGTTGCCAAAGGAGATAAACATTaGAGTCAGTGTGCTGGGAAAGGCAGACCCACCCTT | + |
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Preference number: 6 (lower is better) Translates to: CVCEGVAKGDKH*SQCAGKGRPTL Trigger: AAGGGTGGGTCTGCCTTTCCCAGCACACTGACTCAAATGTTTATCTCCTTTGGCAACACCCTCACAGACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS GCA 72 bp | TTAGCCTCCCAGCCTACATCTATCTCCTGTGCTGGATaGTTCCTGCCCTTGAACATTGAACTCCAAGTTTGT | + |
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Preference number: 6 (lower is better) Translates to: LASQPTSISCAG*FLPLNIELQVC Trigger: ACAAACTTGGAGTTCAATGTTCAAGGGCAGGAAGCATCCAGCACAGGAGATAGATGTAGGCTGGGAGGCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS CCA 72 bp | ATTGAACTCCAAGTTTGTCATCTTTGGGATTCAGACTaGCTTCCTTGTTCCTCAGCTTACAGATGGCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: IELQVCHLWDSD*LPCSSAYRWPG Trigger: GCCGGGCCATCTGTAAGCTGAGGAACAAGGAAGCCAGTCTGAATCCCAAAGATGACAAACTTGGAGTTCAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 72 bp | CAGCTTACAGATGGCCCGGCCTGTTGTGGGACCTTGTaGTTGTGTGAGTTAATACTCCTTAATAAACTCCCT | + |
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Preference number: 6 (lower is better) Translates to: QLTDGPACCGTL*LCELILLNKLP Trigger: AGGGAGTTTATTAAGGAGTATTAACTCACACAATCACAAGGTCCCACAACAGGCCGGGCCATCTGTAAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 72 bp | CCATTGCAGCTAGGATATGAAACAGGCAGAAAAACGTaGAAAGTCTTGACTGGCTTAGCCTCCCAGCCTACA | + |
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Preference number: 6 (lower is better) Translates to: PLQLGYETGRKT*KVLTGLASQPT Trigger: TGTAGGCTGGGAGGCTAAGCCAGTCAAGACTTTTCACGTTTTTCTGCCTGTTTCATATCCTAGCTGCAATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 72 bp | TATCTCCTGTGCTGGATGCTTCCTGCCCTTGAACATTaGACTCCAAGTTTGTCATCTTTGGGATTCAGACTG | + |
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Preference number: 6 (lower is better) Translates to: YLLCWMLPALEH*TPSLSSLGFRL Trigger: CAGTCTGAATCCCAAAGATGACAAACTTGGAGTTCAATGTTCAAGGGCAGGAAGCATCCAGCACAGGAGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS CCA 72 bp | CTGCCCTTGAACATTGAACTCCAAGTTTGTCATCTTTaGGATTCAGACTGGCTTCCTTGTTCCTCAGCTTAC | + |
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Preference number: 6 (lower is better) Translates to: LPLNIELQVCHL*DSDWLPCSSAY Trigger: GTAAGCTGAGGAACAAGGAAGCCAGTCTGAATCCCAAAGATGACAAACTTGGAGTTCAATGTTCAAGGGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 72 bp | TCCTGTATCTTCCAAGCTACAGGCTTCACAATCTTGTaGAGACATAAAGAGAAGGCGCCATCTGCAAATCAG | + |
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Preference number: 6 (lower is better) Translates to: SCIFQATGFTIL*RHKEKAPSANQ Trigger: CTGATTTGCAGATGGCGCCTTCTCTTTATGTCTTCACAAGATTGTGAAGCCTGTAGCTTGGAAGATACAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 72 bp | CTACATCTATCTCCTGTGCTGGATGCTTCCTGCCCTTaGACATTGAACTCCAAGTTTGTCATCTTTGGGATT | + |
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Preference number: 6 (lower is better) Translates to: LHLSPVLDASCP*TLNSKFVIFGI Trigger: AATCCCAAAGATGACAAACTTGGAGTTCAATGTTCAAGGGCAGGAAGCATCCAGCACAGGAGATAGATGTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 72 bp | ATCTTAGCAATCAGAAGCGTCCTCATAAACAGGAGATaGAACGTCAGAGTCACATTAGGAATCCTGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ILAIRSVLINRR*NVRVTLGILRL Trigger: CAGCCTCAGGATTCCTAATGTGACTCTGACGTTTCATCTCCTGTTTATGAGGACGCTTCTGATTGCTAAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000566582.1 ENST00000568095.5 |
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| CDS TCA 72 bp | GACCTTTATGACCCATTGGACATTTATGCCTTTAAATaGATGGTACAAACACTTTCACCTATGTCCTGTATC | + |
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Preference number: 6 (lower is better) Translates to: DLYDPLDIYAFK*MVQTLSPMSCI Trigger: GATACAGGACATAGGTGAAAGTGTTTGTACCATTCATTTAAAGGCATAAATGTCCAATGGGTCATAAAGGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568095.5 |
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