Pregenerated sensors for LINC01538 (Homo sapiens)
Ensembl gene IDs: ENSG00000266952Ensembl transcript IDs: ENST00000588074.1, ENST00000649058.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGATGGTGCTGGTGTCTCAGGAGCTTGGAGGGGCTCCCACAATGCTaGACTCAGGTCTCTGAGGAGGGTGCTGATGGGCCATGCCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: RWCWCLRSLEGLPQC*TQVSEEGADGPCLV Trigger: CACCAGGCATGGCCCATCAGCACCCTCCTCAGAGACCTGAGTTCAGCATTGTGGGAGCCCCTCCAAGCTCCTGAGACACCAGCACCATCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS CCA 90 bp | TCTGAAACGGAGTGTTTGCCAGATGGTGCTGGTGTCTCAGGAGCTTaGAGGGGCTCCCACAATGCTGAACTCAGGTCTCTGAGGAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: SETECLPDGAGVSGA*RGSHNAELRSLRRV Trigger: CACCCTCCTCAGAGACCTGAGTTCAGCATTGTGGGAGCCCCTCCAAGCTCCTGAGACACCAGCACCATCTGGCAAACACTCCGTTTCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS CCA 90 bp | GTATTTACTGAATGTCCGACGTGCCCCAGGAATTGCGCTCTGCAGTaGCACTGTGACACTGAGCAGGAGAAATGCTCCTGGAGGCCTGAT | + |
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Preference number: 5 (lower is better) Translates to: VFTECPTCPRNCALQ*HCDTEQEKCSWRPD Trigger: ATCAGGCCTCCAGGAGCATTTCTCCTGCTCAGTGTCACAGTGCCACTGCAGAGCGCAATTCCTGGGGCACGTCGGACATTCAGTAAATAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588074.1 |
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| CDS TCA 90 bp | AGGAGAAATGCTCCTGGAGGCCTGATCAGTGTTGTCTTGGGAAGCTaGAGGTTTTCGACATCAGCCCCACCGAAGCAATGCATCACCTGC | + |
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Preference number: 5 (lower is better) Translates to: RRNAPGGLISVVLGS*RFSTSAPPKQCITC Trigger: GCAGGTGATGCATTGCTTCGGTGGGGCTGATGTCGAAAACCTTCAGCTTCCCAAGACAACACTGATCAGGCCTCCAGGAGCATTTCTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000588074.1 ENST00000649058.1 |
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| CDS GCA 90 bp | AGGAATTGCGCTCTGCAGTGGCACTGTGACACTGAGCAGGAGAAATaGTCCTGGAGGCCTGATCAGTGTTGTCTTGGGAAGCTGAAGGTT | + |
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Preference number: 5 (lower is better) Translates to: RNCALQWHCDTEQEK*SWRPDQCCLGKLKV Trigger: AACCTTCAGCTTCCCAAGACAACACTGATCAGGCCTCCAGGAGCATTTCTCCTGCTCAGTGTCACAGTGCCACTGCAGAGCGCAATTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588074.1 |
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| CDS CCA 90 bp | TTGATTGCCAGCTCTCAGATACCTAGGGAATGTCTTCATTTCTCGTaGTCCCTTGCCCTGAGGTCGCTCTGTTTCCTGAGAGGTAAGACC | + |
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Preference number: 5 (lower is better) Translates to: LIASSQIPRECLHFS*SLALRSLCFLRGKT Trigger: GGTCTTACCTCTCAGGAAACAGAGCGACCTCAGGGCAAGGGACCACGAGAAATGAAGACATTCCCTAGGTATCTGAGAGCTGGCAATCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS GCA 90 bp | CATTCAATAAACGTATTTACTGAATGTCCGACGTGCCCCAGGAATTaGGCTCTGCAGTGGCACTGTGACACTGAGCAGGAGAAATGCTCC | + |
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Preference number: 5 (lower is better) Translates to: HSINVFTECPTCPRN*ALQWHCDTEQEKCS Trigger: GGAGCATTTCTCCTGCTCAGTGTCACAGTGCCACTGCAGAGCGCAATTCCTGGGGCACGTCGGACATTCAGTAAATACGTTTATTGAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588074.1 |
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| CDS TCA 90 bp | TGGGACTGCAGAAGTTCCACTTTTGTCTCTTATATTGTTTCTGCGTaGTCCACGGATTCTCTTCTTTGTCCATGCAGTTTTATGTTCCTA | + |
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Preference number: 5 (lower is better) Translates to: WDCRSSTFVSYIVSA*STDSLLCPCSFMFL Trigger: TAGGAACATAAAACTGCATGGACAAAGAAGAGAATCCGTGGATCACGCAGAAACAATATAAGAGACAAAAGTGGAACTTCTGCAGTCCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS CCA 90 bp | AAATTCCATGTGCAGAAGCTATGGAGTACATCTACAATGGTGTGTTaGCCAATTCAGCACTCAATTAACAGAAAATTTGCAATCTGGTCT | + |
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Preference number: 5 (lower is better) Translates to: KFHVQKLWSTSTMVC*PIQHSINRKFAIWS Trigger: AGACCAGATTGCAAATTTTCTGTTAATTGAGTGCTGAATTGGCCAACACACCATTGTAGATGTACTCCATAGCTTCTGCACATGGAATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588074.1 |
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| CDS CCA 90 bp | TCTGGTGAATTGACCAAAATCAGACTTCAATTCGGTCATTTATTCTaGTCAATTCACAAGCATATAATGAATGCCTCTGACATGCACAGT | + |
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Preference number: 5 (lower is better) Translates to: SGELTKIRLQFGHLF*SIHKHIMNASDMHS Trigger: ACTGTGCATGTCAGAGGCATTCATTATATGCTTGTGAATTGACCAGAATAAATGACCGAATTGAAGTCTGATTTTGGTCAATTCACCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588074.1 |
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| CDS CCA 90 bp | TCTGTAATAAATTCCATGTGCAGAAGCTATGGAGTACATCTACAATaGTGTGTTGGCCAATTCAGCACTCAATTAACAGAAAATTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: SVINSMCRSYGVHLQ*CVGQFSTQLTENLQ Trigger: TTGCAAATTTTCTGTTAATTGAGTGCTGAATTGGCCAACACACCATTGTAGATGTACTCCATAGCTTCTGCACATGGAATTTATTACAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588074.1 |
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| CDS CAA 90 bp | CTCTGTTTCCTGAGAGGTAAGACCCAGACATCTGAAACGGAGTGTTaGCCAGATGGTGCTGGTGTCTCAGGAGCTTGGAGGGGCTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: LCFLRGKTQTSETEC*PDGAGVSGAWRGSH Trigger: GTGGGAGCCCCTCCAAGCTCCTGAGACACCAGCACCATCTGGCAAACACTCCGTTTCAGATGTCTGGGTCTTACCTCTCAGGAAACAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS TCA 72 bp | GCTCCTGGAGGCCTGATCAGTGTTGTCTTGGGAAGCTaGAGGTTTTCGACATCAGCCCCACCGAAGCAATGC | + |
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Preference number: 6 (lower is better) Translates to: APGGLISVVLGS*RFSTSAPPKQC Trigger: GCATTGCTTCGGTGGGGCTGATGTCGAAAACCTTCAGCTTCCCAAGACAACACTGATCAGGCCTCCAGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000588074.1 ENST00000649058.1 |
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| CDS GCA 72 bp | CGTCTTTGTGCCACCTGTGACACTGAGCAGGAGAAATaGTCCTGGAGGCCTGATCAGTGTTGTCTTGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RLCATCDTEQEK*SWRPDQCCLGK Trigger: CTTCCCAAGACAACACTGATCAGGCCTCCAGGAGCATTTCTCCTGCTCAGTGTCACAGGTGGCACAAAGACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS CAA 72 bp | CTGAGAGGTAAGACCCAGACATCTGAAACGGAGTGTTaGCCAGATGGTGCTGGTGTCTCAGGAGCTTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: LRGKTQTSETEC*PDGAGVSGAWR Trigger: CCTCCAAGCTCCTGAGACACCAGCACCATCTGGCAAACACTCCGTTTCAGATGTCTGGGTCTTACCTCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS GCA 72 bp | TCATTCCTTGGCAGACTGGGATGGTGGTCATCATACTaGACCATAGCATCCTCAAGGCTCTGTTCCAGGGAA | + |
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Preference number: 6 (lower is better) Translates to: SFLGRLGWWSSY*TIASSRLCSRE Trigger: TTCCCTGGAACAGAGCCTTGAGGATGCTATGGTGCAGTATGATGACCACCATCCCAGTCTGCCAAGGAATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000588074.1 ENST00000649058.1 |
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| CDS CCA 72 bp | GCAGGAAGTTACTCATTCCTTGGCAGACTGGGATGGTaGTCATCATACTGCACCATAGCATCCTCAAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: AGSYSFLGRLGW*SSYCTIASSRL Trigger: GAGCCTTGAGGATGCTATGGTGCAGTATGATGACCACCATCCCAGTCTGCCAAGGAATGAGTAACTTCCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000588074.1 ENST00000649058.1 |
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| CDS CCA 72 bp | AGCTCTCAGATACCTAGGGAATGTCTTCATTTCTCGTaGTCCCTTGCCCTGAGGTCGCTCTGTTTCCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: SSQIPRECLHFS*SLALRSLCFLR Trigger: TCTCAGGAAACAGAGCGACCTCAGGGCAAGGGACCACGAGAAATGAAGACATTCCCTAGGTATCTGAGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS CCA 72 bp | ATTGCAGGAAGTTACTCATTCCTTGGCAGACTGGGATaGTGGTCATCATACTGCACCATAGCATCCTCAAGG | + |
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Preference number: 6 (lower is better) Translates to: IAGSYSFLGRLG*WSSYCTIASSR Trigger: CCTTGAGGATGCTATGGTGCAGTATGATGACCACCATCCCAGTCTGCCAAGGAATGAGTAACTTCCTGCAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000588074.1 ENST00000649058.1 |
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| CDS CAA 72 bp | CAGGACTGTACTGGTTTTAGGGCCGAAAGTCCTAAATaGCAGGAAGTTACTCATTCCTTGGCAGACTGGGAT | + |
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Preference number: 6 (lower is better) Translates to: QDCTGFRAESPK*QEVTHSLADWD Trigger: ATCCCAGTCTGCCAAGGAATGAGTAACTTCCTGCAATTTAGGACTTTCGGCCCTAAAACCAGTACAGTCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000588074.1 ENST00000649058.1 |
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| CDS TCA 72 bp | GGATGCAATGCTTCTGTGGCCCTTTGTCTGGTGAATTaGCCAAAATCAGACTTCAATTCGGTCATTTATTCT | + |
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Preference number: 6 (lower is better) Translates to: GCNASVALCLVN*PKSDFNSVIYS Trigger: AGAATAAATGACCGAATTGAAGTCTGATTTTGGTCAATTCACCAGACAAAGGGCCACAGAAGCATTGCATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588074.1 |
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| CDS CAA 90 bp | TCTGCAGTTGCTCCAAGTTGCACTTTATGGCGTCTTGATCAGTTCTaGCATATAGTTGAAATACTGAAGCATCCTCCATCAGCTTTTGAT | + |
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Preference number: 6 (lower is better) Translates to: SAVAPSCTLWRLDQF*HIVEILKHPPSAFD Trigger: ATCAAAAGCTGATGGAGGATGCTTCAGTATTTCAACTATATGCAAGAACTGATCAAGACGCCATAAAGTGCAACTTGGAGCAACTGCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS CCA 72 bp | GTGCAGAAGCTATGGAGTACATCTACAATGGTGTGTTaGCCAATTCAGCACTCAATTAACAGAAAATTTGCA | + |
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Preference number: 6 (lower is better) Translates to: VQKLWSTSTMVC*PIQHSINRKFA Trigger: TGCAAATTTTCTGTTAATTGAGTGCTGAATTGGCCAACACACCATTGTAGATGTACTCCATAGCTTCTGCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000588074.1 |
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| CDS CCA 72 bp | AATTCCATGTGCAGAAGCTATGGAGTACATCTACAATaGTGTGTTGGCCAATTCAGCACTCAATTAACAGAA | + |
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Preference number: 6 (lower is better) Translates to: NSMCRSYGVHLQ*CVGQFSTQLTE Trigger: TTCTGTTAATTGAGTGCTGAATTGGCCAACACACCATTGTAGATGTACTCCATAGCTTCTGCACATGGAATT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000588074.1 |
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| CDS TCA 72 bp | AGAAGTTCCACTTTTGTCTCTTATATTGTTTCTGCGTaGTCCACGGATTCTCTTCTTTGTCCATGCAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: RSSTFVSYIVSA*STDSLLCPCSF Trigger: AAAACTGCATGGACAAAGAAGAGAATCCGTGGATCACGCAGAAACAATATAAGAGACAAAAGTGGAACTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS CAA 72 bp | TTATTTGTAGAAAATATTCGATTTCATGGTCTGCAGTaGCTCCAAGTTGCACTTTATGGCGTCTTGATCAGT | + |
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Preference number: 6 (lower is better) Translates to: LFVENIRFHGLQ*LQVALYGVLIS Trigger: ACTGATCAAGACGCCATAAAGTGCAACTTGGAGCAACTGCAGACCATGAAATCGAATATTTTCTACAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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| CDS CAA 90 bp | TCTTTATTGTTATTTGTAGAAAATATTCGATTTCATGGTCTGCAGTaGCTCCAAGTTGCACTTTATGGCGTCTTGATCAGTTCTTGCATA | + |
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Preference number: 6 (lower is better) Translates to: SLLLFVENIRFHGLQ*LQVALYGVLISSCI Trigger: TATGCAAGAACTGATCAAGACGCCATAAAGTGCAACTTGGAGCAACTGCAGACCATGAAATCGAATATTTTCTACAAATAACAATAAAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649058.1 |
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