Pregenerated sensors for LINC01535 (Homo sapiens)
Ensembl gene IDs: ENSG00000226686Ensembl transcript IDs: ENST00000438770.6, ENST00000591116.5, ENST00000659928.1, ENST00000664190.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGGCGCTCCCATGTTAGGCAGGCGCTCAGCCGAACATCCCAAGGTTaGGGAACCACTATACCCGCCGTGCGCCTGGATGGCATCTGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: RRSHVRQALSRTSQG*GTTIPAVRLDGICR Trigger: TCTGCAGATGCCATCCAGGCGCACGGCGGGTATAGTGGTTCCGCAACCTTGGGATGTTCGGCTGAGCGCCTGCCTAACATGGGAGCGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659928.1 ENST00000664190.1 |
||
| CDS GCA 72 bp | CATGTTAGGCAGGCGCTCAGCCGAACATCCCAAGGTTaGGGAACCACTATACCCGCCGTGCGCCTGGATGGC | + |
|
Preference number: 6 (lower is better) Translates to: HVRQALSRTSQG*GTTIPAVRLDG Trigger: GCCATCCAGGCGCACGGCGGGTATAGTGGTTCCGCAACCTTGGGATGTTCGGCTGAGCGCCTGCCTAACATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000438770.6 ENST00000659928.1 ENST00000664190.1 |
||
| CDS CAA 72 bp | GAGGATCCAGGGGCCTGGGGACTTGTTAAACACAGATaGTTGGGTCTCACTCCTAGAGTTTCTTCTTCAGTA | + |
|
Preference number: 6 (lower is better) Translates to: EDPGAWGLVKHR*LGLTPRVSSSV Trigger: TACTGAAGAAGAAACTCTAGGAGTGAGACCCAACAATCTGTGTTTAACAAGTCCCCAGGCCCCTGGATCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000591116.5 |
||
| CDS CAA 72 bp | GATCCAGGGGCCTGGGGACTTGTTAAACACAGATTGTaGGGTCTCACTCCTAGAGTTTCTTCTTCAGTATTC | + |
|
Preference number: 6 (lower is better) Translates to: DPGAWGLVKHRL*GLTPRVSSSVF Trigger: GAATACTGAAGAAGAAACTCTAGGAGTGAGACCCAACAATCTGTGTTTAACAAGTCCCCAGGCCCCTGGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000591116.5 |
||