Pregenerated sensors for LINC01534 (Homo sapiens)
Ensembl gene IDs: ENSG00000225975Ensembl transcript IDs: ENST00000425254.3, ENST00000433232.5, ENST00000590952.1, ENST00000665321.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACAGGTGCATACACAGGCCCGAGCTACGGCCCTGCACACCCTGTCTaGGTCCCGGGAGCTCGGGGCTTCCTCACCGTGAGCGCCGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: TGAYTGPSYGPAHPV*VPGARGFLTVSAAL Trigger: GAGGGCGGCGCTCACGGTGAGGAAGCCCCGAGCTCCCGGGACGCAGACAGGGTGTGCAGGGCCGTAGCTCGGGCCTGTGTATGCACCTGT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000590952.1 ENST00000665321.1 |
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| CDS TCA 90 bp | CTGCACACCCTGTCTGCGTCCCGGGAGCTCGGGGCTTCCTCACCGTaGGCGCCGCCCTCATCCCAGCCACGCACTATGAGAATTTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: LHTLSASRELGASSP*APPSSQPRTMRIWK Trigger: CTTCCAAATTCTCATAGTGCGTGGCTGGGATGAGGGCGGCGCTCACGGTGAGGAAGCCCCGAGCTCCCGGGACGCAGACAGGGTGTGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433232.5 |
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| CDS GCA 90 bp | GCGCACACCGCCGCCTTGTCCTGGCATCAAACACACACGCACAGGTaGATACACAGGCCCGAGCTACGGCCCTGCACACCCTGTCTGCGT | + |
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Preference number: 5 (lower is better) Translates to: AHTAALSWHQTHTHR*IHRPELRPCTPCLR Trigger: ACGCAGACAGGGTGTGCAGGGCCGTAGCTCGGGCCTGTGTATGCACCTGTGCGTGTGTGTTTGATGCCAGGACAAGGCGGCGGTGTGCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000590952.1 ENST00000665321.1 |
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| CDS TCA 90 bp | GGGGCTTGGCAATTTGGGCTTGGCTTGCCTGAGTGGTTCTTCTGCTaGTCATATTCATGTGACAGCTGTCAGCTGTTGGCCTGGTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: GAWQFGLGLPEWFFC*SYSCDSCQLLAWWR Trigger: CCTCCACCAGGCCAACAGCTGACAGCTGTCACATGAATATGATCAGCAGAAGAACCACTCAGGCAAGCCAAGCCCAAATTGCCAAGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000425254.3 ENST00000665321.1 |
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| CDS CCA 90 bp | GATCATATTCATGTGACAGCTGTCAGCTGTTGGCCTGGTGGAGGCTaGATGGTTCAAGATGGTCTCCCTGAAATTTCTGGCCGTTGTTGC | + |
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Preference number: 5 (lower is better) Translates to: DHIHVTAVSCWPGGG*MVQDGLPEISGRCC Trigger: GCAACAACGGCCAGAAATTTCAGGGAGACCATCTTGAACCATCCAGCCTCCACCAGGCCAACAGCTGACAGCTGTCACATGAATATGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000665321.1 |
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| CDS CCA 90 bp | AAAATTCACGTTAAGTCTCCTGCGGAGACAGCTCTGGGAATGATGTaGATCACATGGAACCTGACCTCTGAGAGTTCCCAAGGGAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: KIHVKSPAETALGMM*ITWNLTSESSQGRA Trigger: GGCTCTCCCTTGGGAACTCTCAGAGGTCAGGTTCCATGTGATCCACATCATTCCCAGAGCTGTCTCCGCAGGAGACTTAACGTGAATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000590952.1 |
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| CDS TCA 90 bp | GAATGCAAAGTTGGTCAAGACATGGGAGCTGAGTGGTTCTTCTGCTaGTCATATTCATGTGACAGCTGTCAGCTGTTGGCCTGGTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: ECKVGQDMGAEWFFC*SYSCDSCQLLAWWR Trigger: CCTCCACCAGGCCAACAGCTGACAGCTGTCACATGAATATGATCAGCAGAAGAACCACTCAGCTCCCATGTCTTGACCAACTTTGCATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433232.5 |
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| CDS TCA 90 bp | ACTCCACCCAGAAGTCAATGCCACATTCCTGAGTCTACATACCCGTaGAATGATAGGAACCCATGTGCCCATAAGGTCCTGGAGGGGAAT | + |
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Preference number: 5 (lower is better) Translates to: TPPRSQCHIPESTYP*NDRNPCAHKVLEGN Trigger: ATTCCCCTCCAGGACCTTATGGGCACATGGGTTCCTATCATTTCACGGGTATGTAGACTCAGGAATGTGGCATTGACTTCTGGGTGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000425254.3 ENST00000665321.1 |
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| CDS TCA 90 bp | CTGAAATTTCTGGCCGTTGTTGCTCACTGGACCTCTCTCTCCAAGTaGTCTTTAATGCGCAAGCAAGTTGCTCTTAGCCTTCAGTCATGG | + |
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Preference number: 5 (lower is better) Translates to: LKFLAVVAHWTSLSK*SLMRKQVALSLQSW Trigger: CCATGACTGAAGGCTAAGAGCAACTTGCTTGCGCATTAAAGATCACTTGGAGAGAGAGGTCCAGTGAGCAACAACGGCCAGAAATTTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000665321.1 |
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| CDS TCA 90 bp | GTACTGCTAACCCTTCTTAGTATTCAAGGGAAAGGCCAGGGTCACTaGTATCCAGGACTGGGGACTTTCTCAAAATTCACGTTAAGTCTC | + |
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Preference number: 5 (lower is better) Translates to: VLLTLLSIQGKGQGH*YPGLGTFSKFTLSL Trigger: GAGACTTAACGTGAATTTTGAGAAAGTCCCCAGTCCTGGATATCAGTGACCCTGGCCTTTCCCTTGAATACTAAGAAGGGTTAGCAGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000590952.1 |
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| CDS TCA 90 bp | ATAGGCAAAGAAATGGAATTTTGGTCTGATGTGGCTATGGAGAATTaGGACCATTCCTTAATCATCAAGCAGAAAGAAGTCAAGAAAGTA | + |
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Preference number: 5 (lower is better) Translates to: IGKEMEFWSDVAMEN*DHSLIIKQKEVKKV Trigger: TACTTTCTTGACTTCTTTCTGCTTGATGATTAAGGAATGGTCTCAATTCTCCATAGCCACATCAGACCAAAATTCCATTTCTTTGCCTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665321.1 |
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| CDS TCA 90 bp | TTAATAATAAACCCTTCACATAGGCAAAGAAATGGAATTTTGGTCTaGTGTGGCTATGGAGAATTGAGACCATTCCTTAATCATCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: LIINPSHRQRNGILV*CGYGELRPFLNHQA Trigger: TGCTTGATGATTAAGGAATGGTCTCAATTCTCCATAGCCACATCAGACCAAAATTCCATTTCTTTGCCTATGTGAAGGGTTTATTATTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665321.1 |
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| CDS GCA 72 bp | TACACAGGCCCGAGCTACGGCCCTGCACACCCTGTCTaGGTCCCGGGAGCTCGGGGCTTCCTCACCGTGAGC | + |
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Preference number: 6 (lower is better) Translates to: YTGPSYGPAHPV*VPGARGFLTVS Trigger: GCTCACGGTGAGGAAGCCCCGAGCTCCCGGGACGCAGACAGGGTGTGCAGGGCCGTAGCTCGGGCCTGTGTA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000590952.1 ENST00000665321.1 |
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| CDS TCA 72 bp | CTGTCTGCGTCCCGGGAGCTCGGGGCTTCCTCACCGTaGGCGCCGCCCTCATCCCAGCCACGCACTATGAGA | + |
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Preference number: 6 (lower is better) Translates to: LSASRELGASSP*APPSSQPRTMR Trigger: TCTCATAGTGCGTGGCTGGGATGAGGGCGGCGCTCACGGTGAGGAAGCCCCGAGCTCCCGGGACGCAGACAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433232.5 |
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| CDS GCA 72 bp | ACGCACAGGTGCATACACAGGCCCGAGCTACGGCCCTaGACACCCTGTCTGCGTCCCGGGAGCTCGGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: THRCIHRPELRP*TPCLRPGSSGL Trigger: AAGCCCCGAGCTCCCGGGACGCAGACAGGGTGTGCAGGGCCGTAGCTCGGGCCTGTGTATGCACCTGTGCGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000590952.1 ENST00000665321.1 |
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| CDS GCA 72 bp | GCCGCCTTGTCCTGGCATCAAACACACACGCACAGGTaGATACACAGGCCCGAGCTACGGCCCTGCACACCC | + |
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Preference number: 6 (lower is better) Translates to: AALSWHQTHTHR*IHRPELRPCTP Trigger: GGGTGTGCAGGGCCGTAGCTCGGGCCTGTGTATGCACCTGTGCGTGTGTGTTTGATGCCAGGACAAGGCGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000590952.1 ENST00000665321.1 |
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| CDS CAA 72 bp | AGCTGTCGCAGCCTCCTCGCCGCGCACACCGCCGCCTaGTCCTGGCATCAAACACACACGCACAGGTGCATA | + |
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Preference number: 6 (lower is better) Translates to: SCRSLLAAHTAA*SWHQTHTHRCI Trigger: TATGCACCTGTGCGTGTGTGTTTGATGCCAGGACAAGGCGGCGGTGTGCGCGGCGAGGAGGCTGCGACAGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000590952.1 ENST00000665321.1 |
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| CDS TCA 72 bp | GGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTaGCCTCGTGATCCGCCCATGTCAGCCTCCCAAAGT | + |
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Preference number: 6 (lower is better) Translates to: GFTMLARMVSIS*PRDPPMSASQS Trigger: ACTTTGGGAGGCTGACATGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665321.1 |
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| CDS CCA 72 bp | CATGTGACAGCTGTCAGCTGTTGGCCTGGTGGAGGCTaGATGGTTCAAGATGGTCTCCCTGAAATTTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: HVTAVSCWPGGG*MVQDGLPEISG Trigger: GCCAGAAATTTCAGGGAGACCATCTTGAACCATCCAGCCTCCACCAGGCCAACAGCTGACAGCTGTCACATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000665321.1 |
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| CDS GCA 72 bp | CTCCTAGGTTCTCCCCACGACGTCTTCCCAGAACTCTaGTTAAGGGACACTTACAACTCGAAAAGCCTCGTT | + |
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Preference number: 6 (lower is better) Translates to: LLGSPHDVFPEL*LRDTYNSKSLV Trigger: AACGAGGCTTTTCGAGTTGTAAGTGTCCCTTAAGCAGAGTTCTGGGAAGACGTCGTGGGGAGAACCTAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000590952.1 |
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| CDS CCA 72 bp | CGTGAAATGATAGGAACCCATGTGCCCATAAGGTCCTaGAGGGGAATGCAAAGTTGGTCAAGACATGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: REMIGTHVPIRS*RGMQSWSRHGS Trigger: GCTCCCATGTCTTGACCAACTTTGCATTCCCCTCCAGGACCTTATGGGCACATGGGTTCCTATCATTTCACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000665321.1 |
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| CDS TCA 72 bp | CTGGCCGTTGTTGCTCACTGGACCTCTCTCTCCAAGTaGTCTTTAATGCGCAAGCAAGTTGCTCTTAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: LAVVAHWTSLSK*SLMRKQVALSL Trigger: AAGGCTAAGAGCAACTTGCTTGCGCATTAAAGATCACTTGGAGAGAGAGGTCCAGTGAGCAACAACGGCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000665321.1 |
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| CDS CAA 90 bp | GATAGGAACCCATGTGCCCATAAGGTCCTGGAGGGGAATGCAAAGTaGGTCAAGACATGGGAGCTGAGTGGTTCTTCTGCTGATCATATT | + |
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Preference number: 6 (lower is better) Translates to: DRNPCAHKVLEGNAK*VKTWELSGSSADHI Trigger: AATATGATCAGCAGAAGAACCACTCAGCTCCCATGTCTTGACCAACTTTGCATTCCCCTCCAGGACCTTATGGGCACATGGGTTCCTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433232.5 |
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| CDS TCA 72 bp | AGAAGTCAATGCCACATTCCTGAGTCTACATACCCGTaGAATGATAGGAACCCATGTGCCCATAAGGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: RSQCHIPESTYP*NDRNPCAHKVL Trigger: CAGGACCTTATGGGCACATGGGTTCCTATCATTTCACGGGTATGTAGACTCAGGAATGTGGCATTGACTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000425254.3 ENST00000665321.1 |
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| CDS GCA 72 bp | GTTCAAGATGGTCTCCCTGAAATTTCTGGCCGTTGTTaGTCACTGGACCTCTCTCTCCAAGTGATCTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: VQDGLPEISGRC*SLDLSLQVIFN Trigger: ATTAAAGATCACTTGGAGAGAGAGGTCCAGTGAGCAACAACGGCCAGAAATTTCAGGGAGACCATCTTGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000425254.3 ENST00000433232.5 ENST00000665321.1 |
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| CDS CAA 90 bp | AGCTTTGTCTCAGAAGTCTCACAATATCACTTCCACCACATTCTATaGGTCAAAGCACCTCACAAGGCCCTGCCTAATAGTAACCTAACC | + |
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Preference number: 6 (lower is better) Translates to: SFVSEVSQYHFHHIL*VKAPHKALPNSNLT Trigger: GGTTAGGTTACTATTAGGCAGGGCCTTGTGAGGTGCTTTGACCAATAGAATGTGGTGGAAGTGATATTGTGAGACTTCTGAGACAAAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425254.3 |
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| CDS CAA 72 bp | TCAGAAGTCTCACAATATCACTTCCACCACATTCTATaGGTCAAAGCACCTCACAAGGCCCTGCCTAATAGT | + |
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Preference number: 6 (lower is better) Translates to: SEVSQYHFHHIL*VKAPHKALPNS Trigger: ACTATTAGGCAGGGCCTTGTGAGGTGCTTTGACCAATAGAATGTGGTGGAAGTGATATTGTGAGACTTCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425254.3 |
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| CDS CAA 72 bp | CCTAAGATTTTATACACAACGAGTTCCTCTTATCAGTaGCCTCTCATTTACCTGGGCACAGAACTGCTGTTA | + |
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Preference number: 6 (lower is better) Translates to: PKILYTTSSSYQ*PLIYLGTELLL Trigger: TAACAGCAGTTCTGTGCCCAGGTAAATGAGAGGCAACTGATAAGAGGAACTCGTTGTGTATAAAATCTTAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665321.1 |
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| CDS CCA 72 bp | AGATATGTGTATGATACATGGAATGCAATGTTGAAATaGTCTGAATTCTGGCTGAAGAGACCCAAACTTTCT | + |
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Preference number: 6 (lower is better) Translates to: RYVYDTWNAMLK*SEFWLKRPKLS Trigger: AGAAAGTTTGGGTCTCTTCAGCCAGAATTCAGACCATTTCAACATTGCATTCCATGTATCATACACATATCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665321.1 |
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