Pregenerated sensors for LINC01518 (Homo sapiens)
Ensembl gene IDs: ENSG00000233515Ensembl transcript IDs: ENST00000411439.2, ENST00000662977.1, ENST00000668437.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCACTCCAGCAGCCGTGCAGTCCCTGTCACAGCCACCAGCTTCAGTaGGGCAAGCCAGGGTGCCACAGGCTCCGGCCTCCAGCTTGTGTC | + |
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Preference number: 5 (lower is better) Translates to: PLQQPCSPCHSHQLQ*GKPGCHRLRPPACV Trigger: GACACAAGCTGGAGGCCGGAGCCTGTGGCACCCTGGCTTGCCTCACTGAAGCTGGTGGCTGTGACAGGGACTGCACGGCTGCTGGAGTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000411439.2 ENST00000662977.1 ENST00000668437.1 |
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| CDS TCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTACACTCTGCCATATaGTGGCACCCTATTCCAGATCCAGGGCTGGTTCTGCCTAGCGCC | + |
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Preference number: 5 (lower is better) Translates to: VCVCVCVCVYVHSAI*WHPIPDPGLVLPSA Trigger: GGCGCTAGGCAGAACCAGCCCTGGATCTGGAATAGGGTGCCATCATATGGCAGAGTGTACATACACACACACACACACACACACACACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS CCA 90 bp | TTGGGGATCTTATCTCCTGGTATGTGGTCAGGGGTGGAGAAGCCCTaGTGCTGGTGGGCCAACTGGTTTCTTTATGCAGCTATGCCTACA | + |
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Preference number: 5 (lower is better) Translates to: LGILSPGMWSGVEKP*CWWANWFLYAAMPT Trigger: TGTAGGCATAGCTGCATAAAGAAACCAGTTGGCCCACCAGCACCAGGGCTTCTCCACCCCTGACCACATACCAGGAGATAAGATCCCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS GCA 90 bp | GGGATCTTATCTCCTGGTATGTGGTCAGGGGTGGAGAAGCCCTGGTaGTGGTGGGCCAACTGGTTTCTTTATGCAGCTATGCCTACAAAT | + |
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Preference number: 5 (lower is better) Translates to: GILSPGMWSGVEKPW*WWANWFLYAAMPTN Trigger: ATTTGTAGGCATAGCTGCATAAAGAAACCAGTTGGCCCACCAGCACCAGGGCTTCTCCACCCCTGACCACATACCAGGAGATAAGATCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS GCA 90 bp | CTAGAATTAGACAAGACAGCGGAGGCAGGGGCAGTGCCAGGATCATaGTGGTACCTCAGGTATTCAGAGAAGAGCTTTGCAGAACTGGAA | + |
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Preference number: 5 (lower is better) Translates to: LELDKTAEAGAVPGS*WYLRYSEKSFAELE Trigger: TTCCAGTTCTGCAAAGCTCTTCTCTGAATACCTGAGGTACCAGCATGATCCTGGCACTGCCCCTGCCTCCGCTGTCTTGTCTAATTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS GCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTACACTCTaGCATATGATGGCACCCTATTCCAGATCCAGGGCTGGTTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: CVCVCVCVCVCVCTL*HMMAPYSRSRAGSA Trigger: GGCAGAACCAGCCCTGGATCTGGAATAGGGTGCCATCATATGGCAGAGTGTACATACACACACACACACACACACACACACACACACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS CCA 90 bp | TTATCTCCTGGTATGTGGTCAGGGGTGGAGAAGCCCTGGTGCTGGTaGGCCAACTGGTTTCTTTATGCAGCTATGCCTACAAATAAAGAA | + |
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Preference number: 5 (lower is better) Translates to: LSPGMWSGVEKPWCW*ANWFLYAAMPTNKE Trigger: TTCTTTATTTGTAGGCATAGCTGCATAAAGAAACCAGTTGGCCCACCAGCACCAGGGCTTCTCCACCCCTGACCACATACCAGGAGATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS CCA 90 bp | TGTGTGTCCTTTACACATTCTCCCCAGGTCCACATGGGTTTTCACTaGGTACTCCCAGTTTCCTCCCACATCTCAAAGATGTGCCCATTA | + |
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Preference number: 5 (lower is better) Translates to: CVSFTHSPQVHMGFH*VLPVSSHISKMCPL Trigger: TAATGGGCACATCTTTGAGATGTGGGAGGAAACTGGGAGTACCCAGTGAAAACCCATGTGGACCTGGGGAGAATGTGTAAAGGACACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS CCA 90 bp | GATCATGCTGGTACCTCAGGTATTCAGAGAAGAGCTTTGCAGAACTaGAATTCAGATGCTGTCCAGTTGCTAACTGAACTTTCAGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: DHAGTSGIQRRALQN*NSDAVQLLTELSGR Trigger: CCTTCCTGAAAGTTCAGTTAGCAACTGGACAGCATCTGAATTCCAGTTCTGCAAAGCTCTTCTCTGAATACCTGAGGTACCAGCATGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS TCA 90 bp | TGGCAAATGTTTGGTAGCACAGAAGTATACAGCGCCTTTGGTAAATaGTGTGTAGTACAGTGGCTAGAATGTAGGTGTAGGATGGAAGTC | + |
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Preference number: 5 (lower is better) Translates to: WQMFGSTEVYSAFGK*CVVQWLECRCRMEV Trigger: GACTTCCATCCTACACCTACATTCTAGCCACTGTACTACACATCATTTACCAAAGGCGCTGTATACTTCTGTGCTACCAAACATTTGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS GCA 90 bp | GGTTTTCACTGGGTACTCCCAGTTTCCTCCCACATCTCAAAGATGTaGCCATTATGTGAACTATCATTTCTAAATAGTCCCCATTTGAGC | + |
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Preference number: 5 (lower is better) Translates to: GFHWVLPVSSHISKM*PLCELSFLNSPHLS Trigger: GCTCAAATGGGGACTATTTAGAAATGATAGTTCACATAATGGGCACATCTTTGAGATGTGGGAGGAAACTGGGAGTACCCAGTGAAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS GCA 72 bp | CGTTGGGCCCACTGGGGCTGCGGCTCCTACCTGGGCTaGCTTTCTACCACTCCAGCAGCCGTGCAGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: RWAHWGCGSYLG*LSTTPAAVQSL Trigger: CAGGGACTGCACGGCTGCTGGAGTGGTAGAAAGGCAGCCCAGGTAGGAGCCGCAGCCCCAGTGGGCCCAACG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000411439.2 ENST00000662977.1 |
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| CDS CCA 72 bp | GGTTGGGGATCTTATCTCCTGGTATGTGGTCAGGGGTaGAGAAGCCCTGGTGCTGGTGGGCCAACTGGTTTC | + |
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Preference number: 6 (lower is better) Translates to: GWGSYLLVCGQG*RSPGAGGPTGF Trigger: GAAACCAGTTGGCCCACCAGCACCAGGGCTTCTCCACCCCTGACCACATACCAGGAGATAAGATCCCCAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS CCA 72 bp | AGTTTGTGCTGGTTGGGGATCTTATCTCCTGGTATGTaGTCAGGGGTGGAGAAGCCCTGGTGCTGGTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: SLCWLGILSPGM*SGVEKPWCWWA Trigger: GGCCCACCAGCACCAGGGCTTCTCCACCCCTGACCACATACCAGGAGATAAGATCCCCAACCAGCACAAACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS CCA 72 bp | CCTGGTATGTGGTCAGGGGTGGAGAAGCCCTGGTGCTaGTGGGCCAACTGGTTTCTTTATGCAGCTATGCCT | + |
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Preference number: 6 (lower is better) Translates to: PGMWSGVEKPWC*WANWFLYAAMP Trigger: AGGCATAGCTGCATAAAGAAACCAGTTGGCCCACCAGCACCAGGGCTTCTCCACCCCTGACCACATACCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS CCA 72 bp | GGTATGTGGTCAGGGGTGGAGAAGCCCTGGTGCTGGTaGGCCAACTGGTTTCTTTATGCAGCTATGCCTACA | + |
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Preference number: 6 (lower is better) Translates to: GMWSGVEKPWCW*ANWFLYAAMPT Trigger: TGTAGGCATAGCTGCATAAAGAAACCAGTTGGCCCACCAGCACCAGGGCTTCTCCACCCCTGACCACATACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS CCA 72 bp | CCTGTGTGTCCTTTACACATTCTCCCCAGGTCCACATaGGTTTTCACTGGGTACTCCCAGTTTCCTCCCACA | + |
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Preference number: 6 (lower is better) Translates to: PVCPLHILPRST*VFTGYSQFPPT Trigger: TGTGGGAGGAAACTGGGAGTACCCAGTGAAAACCCATGTGGACCTGGGGAGAATGTGTAAAGGACACACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS CCA 72 bp | TCAGGGGTGGAGAAGCCCTGGTGCTGGTGGGCCAACTaGTTTCTTTATGCAGCTATGCCTACAAATAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: SGVEKPWCWWAN*FLYAAMPTNKE Trigger: TTCTTTATTTGTAGGCATAGCTGCATAAAGAAACCAGTTGGCCCACCAGCACCAGGGCTTCTCCACCCCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS CAA 72 bp | GTTCTGGGAGAGCTAAAAGAAGCGGTTTCATATTCCTaGAAGCTCAGCGAGTTCCTGCTTCACCTCACCAGC | + |
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Preference number: 6 (lower is better) Translates to: VLGELKEAVSYS*KLSEFLLHLTS Trigger: GCTGGTGAGGTGAAGCAGGAACTCGCTGAGCTTCAAGGAATATGAAACCGCTTCTTTTAGCTCTCCCAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS CCA 72 bp | TTTACACATTCTCCCCAGGTCCACATGGGTTTTCACTaGGTACTCCCAGTTTCCTCCCACATCTCAAAGATG | + |
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Preference number: 6 (lower is better) Translates to: FTHSPQVHMGFH*VLPVSSHISKM Trigger: CATCTTTGAGATGTGGGAGGAAACTGGGAGTACCCAGTGAAAACCCATGTGGACCTGGGGAGAATGTGTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS CCA 72 bp | GGGGTGTGTAATCTTGAAATGCAGAGGGAACCAGACTaGCAAATGTTTGGTAGCACAGAAGTATACAGCGCC | + |
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Preference number: 6 (lower is better) Translates to: GVCNLEMQREPD*QMFGSTEVYSA Trigger: GGCGCTGTATACTTCTGTGCTACCAAACATTTGCCAGTCTGGTTCCCTCTGCATTTCAAGATTACACACCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS CAA 90 bp | CAGTGCCAGGATCATGCTGGTACCTCAGGTATTCAGAGAAGAGCTTaGCAGAACTGGAATTCAGATGCTGTCCAGTTGCTAACTGAACTT | + |
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Preference number: 6 (lower is better) Translates to: QCQDHAGTSGIQRRA*QNWNSDAVQLLTEL Trigger: AAGTTCAGTTAGCAACTGGACAGCATCTGAATTCCAGTTCTGCAAAGCTCTTCTCTGAATACCTGAGGTACCAGCATGATCCTGGCACTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS CCA 72 bp | TCAGGTAGCAGCTACCTGTCTAGGGCTGGGAAACAATaGAAAAGATTAAGGTTCTCGGAACCTAGAAACTCA | + |
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Preference number: 6 (lower is better) Translates to: SGSSYLSRAGKQ*KRLRFSEPRNS Trigger: TGAGTTTCTAGGTTCCGAGAACCTTAATCTTTTCCATTGTTTCCCAGCCCTAGACAGGTAGCTGCTACCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662977.1 |
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| CDS TCA 72 bp | TTTGGTAGCACAGAAGTATACAGCGCCTTTGGTAAATaGTGTGTAGTACAGTGGCTAGAATGTAGGTGTAGG | + |
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Preference number: 6 (lower is better) Translates to: FGSTEVYSAFGK*CVVQWLECRCR Trigger: CCTACACCTACATTCTAGCCACTGTACTACACATCATTTACCAAAGGCGCTGTATACTTCTGTGCTACCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS CAA 72 bp | ATCTTGAAATGCAGAGGGAACCAGACTGGCAAATGTTaGGTAGCACAGAAGTATACAGCGCCTTTGGTAAAT | + |
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Preference number: 6 (lower is better) Translates to: ILKCRGNQTGKC*VAQKYTAPLVN Trigger: ATTTACCAAAGGCGCTGTATACTTCTGTGCTACCAAACATTTGCCAGTCTGGTTCCCTCTGCATTTCAAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS CAA 90 bp | AAGATGTGCCCATTATGTGAACTATCATTTCTAAATAGTCCCCATTaGAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT | + |
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Preference number: 6 (lower is better) Translates to: KMCPLCELSFLNSPH*SSVCVCVCVCVCVC Trigger: ACACACACACACACACACACACACACACACACACACAGAGCTCAAATGGGGACTATTTAGAAATGATAGTTCACATAATGGGCACATCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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| CDS CAA 72 bp | CCATTATGTGAACTATCATTTCTAAATAGTCCCCATTaGAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: PLCELSFLNSPH*SSVCVCVCVCV Trigger: CACACACACACACACACACACACACACAGAGCTCAAATGGGGACTATTTAGAAATGATAGTTCACATAATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668437.1 |
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