RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01516 (Homo sapiens)

Ensembl gene IDs: ENSG00000231422

Ensembl transcript IDs: ENST00000436140.2

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GTGCCAAACATTTGCTGCGCCAGGGGCCACCTTGGCTCACTTCTCTaGCAGACGCTATGGTGGGAGGTGAGATGCTTGCTGGGCAGAGAC +
Preference number: 5 (lower is better)
Translates to: VPNICCARGHLGSLL*QTLWWEVRCLLGRD
Trigger: GTCTCTGCCCAGCAAGCATCTCACCTCCCACCATAGCGTCTGGCAGAGAAGTGAGCCAAGGTGGCCCCTGGCGCAGCAAATGTTTGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS GCA 90 bp ATGCGCCTTCTTCCCCCTCCTGTGCAAATGGATGTGCCAAACATTTaGTGCGCCAGGGGCCACCTTGGCTCACTTCTCTGCCAGACGCTA +
Preference number: 5 (lower is better)
Translates to: MRLLPPPVQMDVPNI*CARGHLGSLLCQTL
Trigger: TAGCGTCTGGCAGAGAAGTGAGCCAAGGTGGCCCCTGGCGCAGCAAATGTTTGGCACATCCATTTGCACAGGAGGGGGAAGAAGGCGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 90 bp GGGTCTAGGGAAACAAGAACAGACTTGAAAGGCGGCATTGGGGCTTaGCTGGTGAGAAACCTGCCTGGTCCGTGCCACTGTACTCCCAGC +
Preference number: 5 (lower is better)
Translates to: GSRETRTDLKGGIGA*LVRNLPGPCHCTPS
Trigger: GCTGGGAGTACAGTGGCACGGACCAGGCAGGTTTCTCACCAGCCAAGCCCCAATGCCGCCTTTCAAGTCTGTTCTTGTTTCCCTAGACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS GCA 90 bp CATGGCCAGCCCTTCTTACTGTCCTTAGCCAGTGGTCCAGCAATTTaGCTGTGGAAAGTTCTGTGCTCTGGCAGGCCTCTGGGGGTAGCA +
Preference number: 5 (lower is better)
Translates to: HGQPFLLSLASGPAI*LWKVLCSGRPLGVA
Trigger: TGCTACCCCCAGAGGCCTGCCAGAGCACAGAACTTTCCACAGGCAAATTGCTGGACCACTGGCTAAGGACAGTAAGAAGGGCTGGCCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS GCA 90 bp CTGTCCTTAGCCAGTGGTCCAGCAATTTGCCTGTGGAAAGTTCTGTaGTCTGGCAGGCCTCTGGGGGTAGCATTTGAGATCAGGACGGGT +
Preference number: 5 (lower is better)
Translates to: LSLASGPAICLWKVL*SGRPLGVAFEIRTG
Trigger: ACCCGTCCTGATCTCAAATGCTACCCCCAGAGGCCTGCCAGAGCACAGAACTTTCCACAGGCAAATTGCTGGACCACTGGCTAAGGACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 90 bp TGTGCAAATGGATGTGCCAAACATTTGCTGCGCCAGGGGCCACCTTaGCTCACTTCTCTGCCAGACGCTATGGTGGGAGGTGAGATGCTT +
Preference number: 5 (lower is better)
Translates to: CANGCAKHLLRQGPP*LTSLPDAMVGGEML
Trigger: AAGCATCTCACCTCCCACCATAGCGTCTGGCAGAGAAGTGAGCCAAGGTGGCCCCTGGCGCAGCAAATGTTTGGCACATCCATTTGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 90 bp CAGCCCTTCTTACTGTCCTTAGCCAGTGGTCCAGCAATTTGCCTGTaGAAAGTTCTGTGCTCTGGCAGGCCTCTGGGGGTAGCATTTGAG +
Preference number: 5 (lower is better)
Translates to: QPFLLSLASGPAICL*KVLCSGRPLGVAFE
Trigger: CTCAAATGCTACCCCCAGAGGCCTGCCAGAGCACAGAACTTTCCACAGGCAAATTGCTGGACCACTGGCTAAGGACAGTAAGAAGGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 90 bp AGCCAAACATTCCGTAAAACTACAGTCAATGTGGGAGCCCAAGAGTaGTGCCCACTTTCAAACACCGCTGCCCCCACCAGTGACTCAGTC +
Preference number: 5 (lower is better)
Translates to: SQTFRKTTVNVGAQE*CPLSNTAAPTSDSV
Trigger: GACTGAGTCACTGGTGGGGGCAGCGGTGTTTGAAAGTGGGCATCACTCTTGGGCTCCCACATTGACTGTAGTTTTACGGAATGTTTGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 90 bp ACAGCACTATTCCTAGGCCTCCAAGGTGTCTCCTCAAAGACTGGCTaGCCCACTTTCCAGATGGAGCCAACATCATCCTCTGTCTCATCC +
Preference number: 5 (lower is better)
Translates to: TALFLGLQGVSSKTG*PTFQMEPTSSSVSS
Trigger: GGATGAGACAGAGGATGATGTTGGCTCCATCTGGAAAGTGGGTCAGCCAGTCTTTGAGGAGACACCTTGGAGGCCTAGGAATAGTGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 90 bp ATCCACAGCACTATTCCTAGGCCTCCAAGGTGTCTCCTCAAAGACTaGCTGACCCACTTTCCAGATGGAGCCAACATCATCCTCTGTCTC +
Preference number: 5 (lower is better)
Translates to: IHSTIPRPPRCLLKD*LTHFPDGANIILCL
Trigger: GAGACAGAGGATGATGTTGGCTCCATCTGGAAAGTGGGTCAGCCAGTCTTTGAGGAGACACCTTGGAGGCCTAGGAATAGTGCTGTGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 90 bp CCTGTGGAAAGTTCTGTGCTCTGGCAGGCCTCTGGGGGTAGCATTTaGGATCAGGACGGGTTTTTCTTCAGGATATTTCTTCACCTGGAT +
Preference number: 5 (lower is better)
Translates to: PVESSVLWQASGGSI*DQDGFFFRIFLHLD
Trigger: ATCCAGGTGAAGAAATATCCTGAAGAAAAACCCGTCCTGATCTCAAATGCTACCCCCAGAGGCCTGCCAGAGCACAGAACTTTCCACAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 90 bp CCTCACCCTTTGCAAGTCACTGGGCTGACACATCTGATAAGCCAATaGTACAAACGTCTCCATAGGTGCCAACACACTTTGCCTCCTGAA +
Preference number: 5 (lower is better)
Translates to: PHPLQVTGLTHLISQ*YKRLHRCQHTLPPE
Trigger: TTCAGGAGGCAAAGTGTGTTGGCACCTATGGAGACGTTTGTACCATTGGCTTATCAGATGTGTCAGCCCAGTGACTTGCAAAGGGTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 90 bp AACGAGATCACAGAAGCACAGCAGAATTCTCCAGAAAGCCAGTTGTaGTCAATGGCAGCACAGCCTGGTCCCACAGGAAATGTTCCTGAA +
Preference number: 5 (lower is better)
Translates to: NEITEAQQNSPESQL*SMAAQPGPTGNVPE
Trigger: TTCAGGAACATTTCCTGTGGGACCAGGCTGTGCTGCCATTGATCACAACTGGCTTTCTGGAGAATTCTGCTGTGCTTCTGTGATCTCGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 90 bp TCACAGAAGCACAGCAGAATTCTCCAGAAAGCCAGTTGTGATCAATaGCAGCACAGCCTGGTCCCACAGGAAATGTTCCTGAATTCCTTT +
Preference number: 5 (lower is better)
Translates to: SQKHSRILQKASCDQ*QHSLVPQEMFLNSF
Trigger: AAAGGAATTCAGGAACATTTCCTGTGGGACCAGGCTGTGCTGCCATTGATCACAACTGGCTTTCTGGAGAATTCTGCTGTGCTTCTGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 72 bp AGGGGCCACCTTGGCTCACTTCTCTGCCAGACGCTATaGTGGGAGGTGAGATGCTTGCTGGGCAGAGACCAG +
Preference number: 6 (lower is better)
Translates to: RGHLGSLLCQTL*WEVRCLLGRDQ
Trigger: CTGGTCTCTGCCCAGCAAGCATCTCACCTCCCACCATAGCGTCTGGCAGAGAAGTGAGCCAAGGTGGCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 72 bp GGATGTGCCAAACATTTGCTGCGCCAGGGGCCACCTTaGCTCACTTCTCTGCCAGACGCTATGGTGGGAGGT +
Preference number: 6 (lower is better)
Translates to: GCAKHLLRQGPP*LTSLPDAMVGG
Trigger: ACCTCCCACCATAGCGTCTGGCAGAGAAGTGAGCCAAGGTGGCCCCTGGCGCAGCAAATGTTTGGCACATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CAA 90 bp AATGCGCCTTCTTCCCCCTCCTGTGCAAATGGATGTGCCAAACATTaGCTGCGCCAGGGGCCACCTTGGCTCACTTCTCTGCCAGACGCT +
Preference number: 6 (lower is better)
Translates to: NAPSSPSCANGCAKH*LRQGPPWLTSLPDA
Trigger: AGCGTCTGGCAGAGAAGTGAGCCAAGGTGGCCCCTGGCGCAGCAAATGTTTGGCACATCCATTTGCACAGGAGGGGGAAGAAGGCGCATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS GCA 72 bp CTTCCCCCTCCTGTGCAAATGGATGTGCCAAACATTTaGTGCGCCAGGGGCCACCTTGGCTCACTTCTCTGC +
Preference number: 6 (lower is better)
Translates to: LPPPVQMDVPNI*CARGHLGSLLC
Trigger: GCAGAGAAGTGAGCCAAGGTGGCCCCTGGCGCAGCAAATGTTTGGCACATCCATTTGCACAGGAGGGGGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 72 bp GGCCACCTTGGCTCACTTCTCTGCCAGACGCTATGGTaGGAGGTGAGATGCTTGCTGGGCAGAGACCAGATT +
Preference number: 6 (lower is better)
Translates to: GHLGSLLCQTLW*EVRCLLGRDQI
Trigger: AATCTGGTCTCTGCCCAGCAAGCATCTCACCTCCCACCATAGCGTCTGGCAGAGAAGTGAGCCAAGGTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CAA 90 bp ACATGGCCAGCCCTTCTTACTGTCCTTAGCCAGTGGTCCAGCAATTaGCCTGTGGAAAGTTCTGTGCTCTGGCAGGCCTCTGGGGGTAGC +
Preference number: 6 (lower is better)
Translates to: TWPALLTVLSQWSSN*PVESSVLWQASGGS
Trigger: GCTACCCCCAGAGGCCTGCCAGAGCACAGAACTTTCCACAGGCAAATTGCTGGACCACTGGCTAAGGACAGTAAGAAGGGCTGGCCATGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS GCA 72 bp GCCAGTGGTCCAGCAATTTGCCTGTGGAAAGTTCTGTaGTCTGGCAGGCCTCTGGGGGTAGCATTTGAGATC +
Preference number: 6 (lower is better)
Translates to: ASGPAICLWKVL*SGRPLGVAFEI
Trigger: GATCTCAAATGCTACCCCCAGAGGCCTGCCAGAGCACAGAACTTTCCACAGGCAAATTGCTGGACCACTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS GCA 72 bp CCCTTCTTACTGTCCTTAGCCAGTGGTCCAGCAATTTaGCTGTGGAAAGTTCTGTGCTCTGGCAGGCCTCTG +
Preference number: 6 (lower is better)
Translates to: PFLLSLASGPAI*LWKVLCSGRPL
Trigger: CAGAGGCCTGCCAGAGCACAGAACTTTCCACAGGCAAATTGCTGGACCACTGGCTAAGGACAGTAAGAAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 72 bp TTACTGTCCTTAGCCAGTGGTCCAGCAATTTGCCTGTaGAAAGTTCTGTGCTCTGGCAGGCCTCTGGGGGTA +
Preference number: 6 (lower is better)
Translates to: LLSLASGPAICL*KVLCSGRPLGV
Trigger: TACCCCCAGAGGCCTGCCAGAGCACAGAACTTTCCACAGGCAAATTGCTGGACCACTGGCTAAGGACAGTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 72 bp GCACCTAAGATCCTGAAAGGTGATGGGAAGGGTGTTTaGGAATGCGCCTTCTTCCCCCTCCTGTGCAAATGG +
Preference number: 6 (lower is better)
Translates to: APKILKGDGKGV*ECAFFPLLCKW
Trigger: CCATTTGCACAGGAGGGGGAAGAAGGCGCATTCTCAAACACCCTTCCCATCACCTTTCAGGATCTTAGGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 72 bp AGGAATCCATTCTTTCACAGAGCACTGCTCCTGTCCTaGGCTGGCCGCTTGCCTGGTAGCCAATCGAAATGT +
Preference number: 6 (lower is better)
Translates to: RNPFFHRALLLS*AGRLPGSQSKC
Trigger: ACATTTCGATTGGCTACCAGGCAAGCGGCCAGCTCAGGACAGGAGCAGTGCTCTGTGAAAGAATGGATTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 72 bp TTCCGTAAAACTACAGTCAATGTGGGAGCCCAAGAGTaGTGCCCACTTTCAAACACCGCTGCCCCCACCAGT +
Preference number: 6 (lower is better)
Translates to: FRKTTVNVGAQE*CPLSNTAAPTS
Trigger: ACTGGTGGGGGCAGCGGTGTTTGAAAGTGGGCATCACTCTTGGGCTCCCACATTGACTGTAGTTTTACGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 72 bp TTCCTAGGCCTCCAAGGTGTCTCCTCAAAGACTGGCTaGCCCACTTTCCAGATGGAGCCAACATCATCCTCT +
Preference number: 6 (lower is better)
Translates to: FLGLQGVSSKTG*PTFQMEPTSSS
Trigger: AGAGGATGATGTTGGCTCCATCTGGAAAGTGGGTCAGCCAGTCTTTGAGGAGACACCTTGGAGGCCTAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 72 bp GGGCTACATGACCACCCCTCACCCTTTGCAAGTCACTaGGCTGACACATCTGATAAGCCAATGGTACAAACG +
Preference number: 6 (lower is better)
Translates to: GLHDHPSPFASH*ADTSDKPMVQT
Trigger: CGTTTGTACCATTGGCTTATCAGATGTGTCAGCCCAGTGACTTGCAAAGGGTGAGGGGTGGTCATGTAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 72 bp CACAGCAGAATTCTCCAGAAAGCCAGTTGTGATCAATaGCAGCACAGCCTGGTCCCACAGGAAATGTTCCTG +
Preference number: 6 (lower is better)
Translates to: HSRILQKASCDQ*QHSLVPQEMFL
Trigger: CAGGAACATTTCCTGTGGGACCAGGCTGTGCTGCCATTGATCACAACTGGCTTTCTGGAGAATTCTGCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 72 bp ACTATTCCTAGGCCTCCAAGGTGTCTCCTCAAAGACTaGCTGACCCACTTTCCAGATGGAGCCAACATCATC +
Preference number: 6 (lower is better)
Translates to: TIPRPPRCLLKD*LTHFPDGANII
Trigger: GATGATGTTGGCTCCATCTGGAAAGTGGGTCAGCCAGTCTTTGAGGAGACACCTTGGAGGCCTAGGAATAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CAA 72 bp ATGAGTCTCATGGGCTACATGACCACCCCTCACCCTTaGCAAGTCACTGGGCTGACACATCTGATAAGCCAA +
Preference number: 6 (lower is better)
Translates to: MSLMGYMTTPHP*QVTGLTHLISQ
Trigger: TTGGCTTATCAGATGTGTCAGCCCAGTGACTTGCAAAGGGTGAGGGGTGGTCATGTAGCCCATGAGACTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 72 bp ACAGAAGCACAGCAGAATTCTCCAGAAAGCCAGTTGTaGTCAATGGCAGCACAGCCTGGTCCCACAGGAAAT +
Preference number: 6 (lower is better)
Translates to: TEAQQNSPESQL*SMAAQPGPTGN
Trigger: ATTTCCTGTGGGACCAGGCTGTGCTGCCATTGATCACAACTGGCTTTCTGGAGAATTCTGCTGTGCTTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 72 bp ATAACATGGCCAGCCCTTCTTACTGTCCTTAGCCAGTaGTCCAGCAATTTGCCTGTGGAAAGTTCTGTGCTC +
Preference number: 6 (lower is better)
Translates to: ITWPALLTVLSQ*SSNLPVESSVL
Trigger: GAGCACAGAACTTTCCACAGGCAAATTGCTGGACCACTGGCTAAGGACAGTAAGAAGGGCTGGCCATGTTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CAA 90 bp GCAGGGCTTCCTCTCCTAAAACTAGTCTTGGGCAGGAAGAAAGACTaGATCACAGTGATCTCAAGGATTAAGAGAGGTGACACCAGCAGA +
Preference number: 6 (lower is better)
Translates to: AGLPLLKLVLGRKKD*ITVISRIKRGDTSR
Trigger: TCTGCTGGTGTCACCTCTCTTAATCCTTGAGATCACTGTGATCAAGTCTTTCTTCCTGCCCAAGACTAGTTTTAGGAGAGGAAGCCCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS GCA 72 bp AATGGTACAAACGTCTCCATAGGTGCCAACACACTTTaGCTCCTGAATAACATGGCCAGCCCTTCTTACTGT +
Preference number: 6 (lower is better)
Translates to: NGTNVSIGANTL*LLNNMASPSYC
Trigger: ACAGTAAGAAGGGCTGGCCATGTTATTCAGGAGGCAAAGTGTGTTGGCACCTATGGAGACGTTTGTACCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CCA 72 bp TTGCAAGTCACTGGGCTGACACATCTGATAAGCCAATaGTACAAACGTCTCCATAGGTGCCAACACACTTTG +
Preference number: 6 (lower is better)
Translates to: LQVTGLTHLISQ*YKRLHRCQHTL
Trigger: CAAAGTGTGTTGGCACCTATGGAGACGTTTGTACCATTGGCTTATCAGATGTGTCAGCCCAGTGACTTGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CAA 90 bp ACCAGCCCAAGTGATATAGCAGGGCTTCCTCTCCTAAAACTAGTCTaGGGCAGGAAGAAAGACTTGATCACAGTGATCTCAAGGATTAAG +
Preference number: 6 (lower is better)
Translates to: TSPSDIAGLPLLKLV*GRKKDLITVISRIK
Trigger: CTTAATCCTTGAGATCACTGTGATCAAGTCTTTCTTCCTGCCCAAGACTAGTTTTAGGAGAGGAAGCCCTGCTATATCACTTGGGCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 72 bp ATCAATTACCATTTCTTCTGTGGTCTTGACCCCAAATaGATGAGTCTCATGGGCTACATGACCACCCCTCAC +
Preference number: 6 (lower is better)
Translates to: INYHFFCGLDPK*MSLMGYMTTPH
Trigger: GTGAGGGGTGGTCATGTAGCCCATGAGACTCATTCATTTGGGGTCAAGACCACAGAAGAAATGGTAATTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CAA 72 bp AGTGATATAGCAGGGCTTCCTCTCCTAAAACTAGTCTaGGGCAGGAAGAAAGACTTGATCACAGTGATCTCA +
Preference number: 6 (lower is better)
Translates to: SDIAGLPLLKLV*GRKKDLITVIS
Trigger: TGAGATCACTGTGATCAAGTCTTTCTTCCTGCCCAAGACTAGTTTTAGGAGAGGAAGCCCTGCTATATCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 72 bp GAATCATTTACAGTACATTTTGCAGAGCCTTTATCTTaGGCAGTGTTCCACTTCAGGCTGAAGTTGAATTTC +
Preference number: 6 (lower is better)
Translates to: ESFTVHFAEPLS*AVFHFRLKLNF
Trigger: GAAATTCAACTTCAGCCTGAAGTGGAACACTGCTCAAGATAAAGGCTCTGCAAAATGTACTGTAAATGATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS CAA 72 bp TTTGCATTAACGGTTGTGAATCATTTACAGTACATTTaGCAGAGCCTTTATCTTGAGCAGTGTTCCACTTCA +
Preference number: 6 (lower is better)
Translates to: FALTVVNHLQYI*QSLYLEQCSTS
Trigger: TGAAGTGGAACACTGCTCAAGATAAAGGCTCTGCAAAATGTACTGTAAATGATTCACAACCGTTAATGCAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000436140.2
CDS TCA 72 bp GCATTATCTTGTGATGTCAAGTATTCACCTACTCTATaGGCAATTTCCATCTCGATATATACGCAAAAGAAA +
Preference number: 6 (lower is better)
Translates to: ALSCDVKYSPTL*AISISIYTQKK
Trigger: TTTCTTTTGCGTATATATCGAGATGGAAATTGCTCATAGAGTAGGTGAATACTTGACATCACAAGATAATGC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000436140.2