Pregenerated sensors for LINC01509 (Homo sapiens)
Ensembl gene IDs: ENSG00000226825Ensembl transcript IDs: ENST00000415302.2, ENST00000423523.1, ENST00000654319.1, ENST00000655513.1, ENST00000659615.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTTCAGAGGGCGATGAGCAAATCCGTGAGGCTCCAGCATGTGGGCTaGCAGGTGCCAGATGATGGAGGGTTCATGTGCCAAGCCCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: VQRAMSKSVRLQHVG*QVPDDGGFMCQAQE Trigger: CTCCTGGGCTTGGCACATGAACCCTCCATCATCTGGCACCTGGCAGCCCACATGCTGGAGCCTCACGGATTTGCTCATCGCCCTCTGAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415302.2 ENST00000655513.1 ENST00000659615.1 |
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| CDS TCA 90 bp | GAGCAAATCCGTGAGGCTCCAGCATGTGGGCTGCCAGGTGCCAGATaGTGGAGGGTTCATGTGCCAAGCCCAGGAGTTTGGACTGGATCC | + |
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Preference number: 5 (lower is better) Translates to: EQIREAPACGLPGAR*WRVHVPSPGVWTGS Trigger: GGATCCAGTCCAAACTCCTGGGCTTGGCACATGAACCCTCCATCATCTGGCACCTGGCAGCCCACATGCTGGAGCCTCACGGATTTGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415302.2 ENST00000655513.1 ENST00000659615.1 |
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| CDS GCA 90 bp | CTCCAGCATGTGGGCTGCCAGGTGCCAGATGATGGAGGGTTCATGTaGCAAGCCCAGGAGTTTGGACTGGATCCTGGAAGTGAAGGACGT | + |
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Preference number: 5 (lower is better) Translates to: LQHVGCQVPDDGGFM*QAQEFGLDPGSEGR Trigger: ACGTCCTTCACTTCCAGGATCCAGTCCAAACTCCTGGGCTTGGCACATGAACCCTCCATCATCTGGCACCTGGCAGCCCACATGCTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415302.2 ENST00000655513.1 ENST00000659615.1 |
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| CDS TCA 90 bp | CAGTTTCAAATAAGGGACTGTGATGCCACGAAGCAGAACGAAGACTaGGCCTGGATCACAATGCAATGGCCTGGCATGAGGTTGGGGAAA | + |
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Preference number: 5 (lower is better) Translates to: QFQIRDCDATKQNED*AWITMQWPGMRLGK Trigger: TTTCCCCAACCTCATGCCAGGCCATTGCATTGTGATCCAGGCTCAGTCTTCGTTCTGCTTCGTGGCATCACAGTCCCTTATTTGAAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000415302.2 ENST00000423523.1 ENST00000655513.1 ENST00000659615.1 |
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| CDS TCA 90 bp | AAAGTCGAAGACTGCAGTCCTGGTTCAGTTTCAAATAAGGGACTGTaGTGCCACGAAGCAGAACGAAGACTGAGCCTGGATCACAATGCA | + |
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Preference number: 5 (lower is better) Translates to: KVEDCSPGSVSNKGL*CHEAERRLSLDHNA Trigger: TGCATTGTGATCCAGGCTCAGTCTTCGTTCTGCTTCGTGGCATCACAGTCCCTTATTTGAAACTGAACCAGGACTGCAGTCTTCGACTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000415302.2 ENST00000423523.1 ENST00000654319.1 ENST00000655513.1 ENST00000659615.1 |
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| CDS TCA 90 bp | CAGTTTCAAATAAGGGACTGTGATGCCACGAAGCAGAACGAAGACTaGGCCTGGATCACAATGCAATGGCCTGGCTTTTGTGTTGTTGTC | + |
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Preference number: 5 (lower is better) Translates to: QFQIRDCDATKQNED*AWITMQWPGFCVVV Trigger: GACAACAACACAAAAGCCAGGCCATTGCATTGTGATCCAGGCTCAGTCTTCGTTCTGCTTCGTGGCATCACAGTCCCTTATTTGAAACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654319.1 |
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| CDS GCA 72 bp | GTGGGCTGCCAGGTGCCAGATGATGGAGGGTTCATGTaGCAAGCCCAGGAGTTTGGACTGGATCCTGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: VGCQVPDDGGFM*QAQEFGLDPGS Trigger: ACTTCCAGGATCCAGTCCAAACTCCTGGGCTTGGCACATGAACCCTCCATCATCTGGCACCTGGCAGCCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000415302.2 ENST00000655513.1 ENST00000659615.1 |
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| CDS TCA 72 bp | ATAAGGGACTGTGATGCCACGAAGCAGAACGAAGACTaGGCCTGGATCACAATGCAATGGCCTGGCATGAGG | + |
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Preference number: 6 (lower is better) Translates to: IRDCDATKQNED*AWITMQWPGMR Trigger: CCTCATGCCAGGCCATTGCATTGTGATCCAGGCTCAGTCTTCGTTCTGCTTCGTGGCATCACAGTCCCTTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000415302.2 ENST00000423523.1 ENST00000655513.1 ENST00000659615.1 |
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| CDS TCA 72 bp | GACTGCAGTCCTGGTTCAGTTTCAAATAAGGGACTGTaGTGCCACGAAGCAGAACGAAGACTGAGCCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: DCSPGSVSNKGL*CHEAERRLSLD Trigger: ATCCAGGCTCAGTCTTCGTTCTGCTTCGTGGCATCACAGTCCCTTATTTGAAACTGAACCAGGACTGCAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000415302.2 ENST00000423523.1 ENST00000654319.1 ENST00000655513.1 ENST00000659615.1 |
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| CDS CAA 72 bp | AAGTTTCTGAAAGCTTGGGCCACTGAGGTGTCAAATTaGATGTCAAAGTCGAAGACTGCAGTCCTGGTTCAG | + |
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Preference number: 6 (lower is better) Translates to: KFLKAWATEVSN*MSKSKTAVLVQ Trigger: CTGAACCAGGACTGCAGTCTTCGACTTTGACATCAAATTTGACACCTCAGTGGCCCAAGCTTTCAGAAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000415302.2 ENST00000423523.1 ENST00000654319.1 ENST00000655513.1 |
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| CDS TCA 72 bp | TGTCTGCAATTCCAAGTTTCTGAAAGCTTGGGCCACTaGGGTGTCAAATTTGATGTCAAAGTCGAAGACTGC | + |
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Preference number: 6 (lower is better) Translates to: CLQFQVSESLGH*GVKFDVKVEDC Trigger: GCAGTCTTCGACTTTGACATCAAATTTGACACCTCAGTGGCCCAAGCTTTCAGAAACTTGGAATTGCAGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000415302.2 ENST00000423523.1 ENST00000654319.1 ENST00000655513.1 |
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| CDS CAA 90 bp | TGCAATTCCAAGTTTCTGAAAGCTTGGGCCACTGAGGTGTCAAATTaGATGTCAAAGTCGAAGACTGCAGTCCTGGTTCAGTTTCAAATA | + |
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Preference number: 6 (lower is better) Translates to: CNSKFLKAWATEVSN*MSKSKTAVLVQFQI Trigger: TATTTGAAACTGAACCAGGACTGCAGTCTTCGACTTTGACATCAAATTTGACACCTCAGTGGCCCAAGCTTTCAGAAACTTGGAATTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000415302.2 ENST00000423523.1 ENST00000654319.1 ENST00000655513.1 |
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| CDS CAA 90 bp | TCATCACTTGTCAAGAGGAGGTCTGAAATCCTAGGAAGGGGGAACTaGGAATCAATCATTCAGTCAACGCTTGTACAGATCATTCTGAAA | + |
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Preference number: 6 (lower is better) Translates to: SSLVKRRSEILGRGN*ESIIQSTLVQIILK Trigger: TTTCAGAATGATCTGTACAAGCGTTGACTGAATGATTGATTCCAAGTTCCCCCTTCCTAGGATTTCAGACCTCCTCTTGACAAGTGATGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000654319.1 ENST00000655513.1 ENST00000659615.1 |
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| CDS TCA 72 bp | AATCAATCATTCAGTCAACGCTTGTACAGATCATTCTaGAAATGCCCAGTGAGGTTGCAGGAAACCTTGATC | + |
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Preference number: 6 (lower is better) Translates to: NQSFSQRLYRSF*KCPVRLQETLI Trigger: GATCAAGGTTTCCTGCAACCTCACTGGGCATTTTCAGAATGATCTGTACAAGCGTTGACTGAATGATTGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000654319.1 ENST00000655513.1 ENST00000659615.1 |
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| CDS CCA 72 bp | ATCCATAATGTCTGCAATTCCAAGTTTCTGAAAGCTTaGGCCACTGAGGTGTCAAATTTGATGTCAAAGTCG | + |
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Preference number: 6 (lower is better) Translates to: IHNVCNSKFLKA*ATEVSNLMSKS Trigger: CGACTTTGACATCAAATTTGACACCTCAGTGGCCCAAGCTTTCAGAAACTTGGAATTGCAGACATTATGGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000415302.2 ENST00000423523.1 ENST00000654319.1 ENST00000655513.1 |
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