Pregenerated sensors for LINC01497 (Homo sapiens)
Ensembl gene IDs: ENSG00000237560Ensembl transcript IDs: ENST00000420427.2, ENST00000455460.6, ENST00000649355.1, ENST00000654068.1, ENST00000654711.1
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAAAGCTCAGAGCCAGAAGCAGGGTGTCTTGCAGCTGTGCTGCTCTaGTTGGCAGAAGGAACTCACGCAGCAGCAGGTGTGCTATCTGCT | + |
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Preference number: 5 (lower is better) Translates to: QSSEPEAGCLAAVLL*LAEGTHAAAGVLSA Trigger: AGCAGATAGCACACCTGCTGCTGCGTGAGTTCCTTCTGCCAAGCAGAGCAGCACAGCTGCAAGACACCCTGCTTCTGGCTCTGAGCTTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000455460.6 ENST00000654711.1 |
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| CDS GCA 90 bp | AAGACAAGCAAAGCTCAGAGCCAGAAGCAGGGTGTCTTGCAGCTGTaGTGCTCTGCTTGGCAGAAGGAACTCACGCAGCAGCAGGTGTGC | + |
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Preference number: 5 (lower is better) Translates to: KTSKAQSQKQGVLQL*CSAWQKELTQQQVC Trigger: GCACACCTGCTGCTGCGTGAGTTCCTTCTGCCAAGCAGAGCAGCACAGCTGCAAGACACCCTGCTTCTGGCTCTGAGCTTTGCTTGTCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000455460.6 ENST00000654711.1 |
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| CDS GCA 90 bp | ATATTTTTCTCCACCGCTCCCTGCAGGGTCCGTGTAGACTTCGGCTaGCAAAGAACCCAGTTGAACTTGCCTTGGGAGGGGCTCCATCCC | + |
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Preference number: 5 (lower is better) Translates to: IFFSTAPCRVRVDFG*QRTQLNLPWEGLHP Trigger: GGGATGGAGCCCCTCCCAAGGCAAGTTCAACTGGGTTCTTTGGCAGCCGAAGTCTACACGGACCCTGCAGGGAGCGGTGGAGAAAAATAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000654068.1 ENST00000654711.1 |
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| CDS TCA 90 bp | CTGCTTGGCAGAAGGAACTCACGCAGCAGCAGGTGTGCTATCTGCTaGCTTCAACACACAGAGACGGGGAAGGCTCTGTCCTTGCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: LLGRRNSRSSRCAIC*LQHTETGKALSLLL Trigger: AAGCAGCAAGGACAGAGCCTTCCCCGTCTCTGTGTGTTGAAGTCAGCAGATAGCACACCTGCTGCTGCGTGAGTTCCTTCTGCCAAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455460.6 |
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| CDS TCA 90 bp | TGCCAAAGAACCCAGTTGAACTTGCCTTGGGAGGGGCTCCATCCCTaGAGACAAGCAAAGCTCAGAGCCAGAAGCAGGGTGTCTTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: CQRTQLNLPWEGLHP*RQAKLRARSRVSCS Trigger: GCTGCAAGACACCCTGCTTCTGGCTCTGAGCTTTGCTTGTCTTCAGGGATGGAGCCCCTCCCAAGGCAAGTTCAACTGGGTTCTTTGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000455460.6 ENST00000649355.1 ENST00000654068.1 ENST00000654711.1 |
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| CDS GCA 90 bp | ACAAGCAAAGCTCAGAGCCAGAAGCAGGGTGTCTTGCAGCTGTGCTaGTCTGCTTGGCAGAAGGAACTCACGCAGCAGCAGGTGTGCTAT | + |
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Preference number: 5 (lower is better) Translates to: TSKAQSQKQGVLQLC*SAWQKELTQQQVCY Trigger: ATAGCACACCTGCTGCTGCGTGAGTTCCTTCTGCCAAGCAGAGCAGCACAGCTGCAAGACACCCTGCTTCTGGCTCTGAGCTTTGCTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000455460.6 ENST00000654711.1 |
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| CDS GCA 90 bp | ATTTGCTCACAGTTCTGCAGGCTGTACAAGCATGGCATTGGCATCTaGTCAGCTTCTGGTGAGGCCTCTGGGAGCTTTTACTCAAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: ICSQFCRLYKHGIGI*SASGEASGSFYSRL Trigger: CAGCCTTGAGTAAAAGCTCCCAGAGGCCTCACCAGAAGCTGAGCAGATGCCAATGCCATGCTTGTACAGCCTGCAGAACTGTGAGCAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS TCA 90 bp | GAAGTCCAAGATCAGGGTGCCAGCAGGGCTGGTTTTTGGTTCCAGTaGGATCTTCCTTCCTGCTTTGCATATGGTCTCCTTCTCACTGTG | + |
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Preference number: 5 (lower is better) Translates to: EVQDQGASRAGFWFQ*DLPSCFAYGLLLTV Trigger: CACAGTGAGAAGGAGACCATATGCAAAGCAGGAAGGAAGATCTCACTGGAACCAAAAACCAGCCCTGCTGGCACCCTGATCTTGGACTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000420427.2 ENST00000455460.6 ENST00000649355.1 ENST00000654068.1 |
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| CDS TCA 90 bp | CATGGCTTTGTTTCCGCATATTGCTTCCCCAACTACTTCTCCGGGTaGGGGGTGAGCCCTCTCCTCATGATCAATATATTGTTGCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: HGFVSAYCFPNYFSG*GVSPLLMINILLLA Trigger: AGCCAGCAACAATATATTGATCATGAGGAGAGGGCTCACCCCTCACCCGGAGAAGTAGTTGGGGAAGCAATATGCGGAAACAAAGCCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000455460.6 |
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| CDS GCA 90 bp | CTATCTGCTGACTTCAACACACAGAGACGGGGAAGGCTCTGTCCTTaGTGCTTGCTCCCTAAGCTTGAATATCTGCCATTCCCTTTTACC | + |
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Preference number: 5 (lower is better) Translates to: LSADFNTQRRGRLCP*CLLPKLEYLPFPFT Trigger: GGTAAAAGGGAATGGCAGATATTCAAGCTTAGGGAGCAAGCAGCAAGGACAGAGCCTTCCCCGTCTCTGTGTGTTGAAGTCAGCAGATAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000455460.6 |
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| CDS CCA 90 bp | GTTCTGAGAAAGGCTAGAAGTCCAAGATCAGGGTGCCAGCAGGGCTaGTTTTTGGTTCCAGTGAGATCTTCCTTCCTGCTTTGCATATGG | + |
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Preference number: 5 (lower is better) Translates to: VLRKARSPRSGCQQG*FLVPVRSSFLLCIW Trigger: CCATATGCAAAGCAGGAAGGAAGATCTCACTGGAACCAAAAACCAGCCCTGCTGGCACCCTGATCTTGGACTTCTAGCCTTTCTCAGAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000420427.2 ENST00000455460.6 ENST00000649355.1 ENST00000654068.1 |
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| CDS GCA 90 bp | TCTGCTGACTTCAACACACAGAGACGGGGAAGGCTCTGTCCTTGCTaGTTGCTCCCTAAGCTTGAATATCTGCCATTCCCTTTTACCTAT | + |
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Preference number: 5 (lower is better) Translates to: SADFNTQRRGRLCPC*LLPKLEYLPFPFTY Trigger: ATAGGTAAAAGGGAATGGCAGATATTCAAGCTTAGGGAGCAAGCAGCAAGGACAGAGCCTTCCCCGTCTCTGTGTGTTGAAGTCAGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000455460.6 |
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| CDS TCA 90 bp | CATGGCTTTGTTTCCGCATATTGCTTCCCCAACTACTTCTCCGGGTaGGGGGTGAGCCCTCTCCTCATGATCAATATATCTATATCATGG | + |
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Preference number: 5 (lower is better) Translates to: HGFVSAYCFPNYFSG*GVSPLLMINISISW Trigger: CCATGATATAGATATATTGATCATGAGGAGAGGGCTCACCCCTCACCCGGAGAAGTAGTTGGGGAAGCAATATGCGGAAACAAAGCCATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000420427.2 ENST00000649355.1 |
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| CDS CCA 90 bp | TCCATGCAACGTTCACAGTGGACACTGCTCCATTTTGTAGTCTGTTaGTTACAATTCCCATTGTGGCTTAGGTTAGCTTCCTGCTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: SMQRSQWTLLHFVVC*LQFPLWLRLASCSG Trigger: CCCTGAGCAGGAAGCTAACCTAAGCCACAATGGGAATTGTAACCAACAGACTACAAAATGGAGCAGTGTCCACTGTGAACGTTGCATGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS CCA 90 bp | CAGAGCAGGAGCAAGAGAGACAGTCTCTTTGTGAATGGTCATTGGTaGAATTCTATCTGTGAGGTCTGTTGTTGGTTTGATCCAAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: QSRSKRDSLFVNGHW*NSICEVCCWFDPKA Trigger: GGCCTTTGGATCAAACCAACAACAGACCTCACAGATAGAATTCCACCAATGACCATTCACAAAGAGACTGTCTCTCTTGCTCCTGCTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS CCA 90 bp | GGCCAGAGCAGGAGCAAGAGAGACAGTCTCTTTGTGAATGGTCATTaGTGGAATTCTATCTGTGAGGTCTGTTGTTGGTTTGATCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: GQSRSKRDSLFVNGH*WNSICEVCCWFDPK Trigger: CTTTGGATCAAACCAACAACAGACCTCACAGATAGAATTCCACCAATGACCATTCACAAAGAGACTGTCTCTCTTGCTCCTGCTCTGGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS TCA 90 bp | ATTATGAAGAATGTAATTTGGCCCAGAGAAAGTGACTGCCTCAATTaGACGTTCTTTCTTAGACTGAAGCTGCGTCCGTGTTCCTCGGTA | + |
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Preference number: 5 (lower is better) Translates to: IMKNVIWPRESDCLN*TFFLRLKLRPCSSV Trigger: TACCGAGGAACACGGACGCAGCTTCAGTCTAAGAAAGAACGTTCAATTGAGGCAGTCACTTTCTCTGGGCCAAATTACATTCTTCATAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654711.1 |
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| CDS CCA 90 bp | TCTATCTGTGAGGTCTGTTGTTGGTTTGATCCAAAGGCCAGTGAATaGCAAATGGCATATATGACAATCTCTTTTGAAATGGAGCAGAGC | + |
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Preference number: 5 (lower is better) Translates to: SICEVCCWFDPKASE*QMAYMTISFEMEQS Trigger: GCTCTGCTCCATTTCAAAAGAGATTGTCATATATGCCATTTGCCATTCACTGGCCTTTGGATCAAACCAACAACAGACCTCACAGATAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS CCA 90 bp | TTTGTGAATGGTCATTGGTGGAATTCTATCTGTGAGGTCTGTTGTTaGTTTGATCCAAAGGCCAGTGAATGGCAAATGGCATATATGACA | + |
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Preference number: 5 (lower is better) Translates to: FVNGHWWNSICEVCC*FDPKASEWQMAYMT Trigger: TGTCATATATGCCATTTGCCATTCACTGGCCTTTGGATCAAACCAACAACAGACCTCACAGATAGAATTCCACCAATGACCATTCACAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS TCA 90 bp | GTTGTTGGTTTGATCCAAAGGCCAGTGAATGGCAAATGGCATATATaGCAATCTCTTTTGAAATGGAGCAGAGCATTTTCTATGATGGAG | + |
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Preference number: 5 (lower is better) Translates to: VVGLIQRPVNGKWHI*QSLLKWSRAFSMME Trigger: CTCCATCATAGAAAATGCTCTGCTCCATTTCAAAAGAGATTGTCATATATGCCATTTGCCATTCACTGGCCTTTGGATCAAACCAACAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS GCA 72 bp | TCCACCGCTCCCTGCAGGGTCCGTGTAGACTTCGGCTaGCAAAGAACCCAGTTGAACTTGCCTTGGGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: STAPCRVRVDFG*QRTQLNLPWEG Trigger: CCCCTCCCAAGGCAAGTTCAACTGGGTTCTTTGGCAGCCGAAGTCTACACGGACCCTGCAGGGAGCGGTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455460.6 ENST00000649355.1 ENST00000654068.1 ENST00000654711.1 |
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| CDS CAA 90 bp | CCATCCCTGAAGACAAGCAAAGCTCAGAGCCAGAAGCAGGGTGTCTaGCAGCTGTGCTGCTCTGCTTGGCAGAAGGAACTCACGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: PSLKTSKAQSQKQGV*QLCCSAWQKELTQQ Trigger: CTGCTGCGTGAGTTCCTTCTGCCAAGCAGAGCAGCACAGCTGCAAGACACCCTGCTTCTGGCTCTGAGCTTTGCTTGTCTTCAGGGATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000455460.6 ENST00000654711.1 |
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| CDS CAA 90 bp | GGTCCGTGTAGACTTCGGCTGCCAAAGAACCCAGTTGAACTTGCCTaGGGAGGGGCTCCATCCCTGAAGACAAGCAAAGCTCAGAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: GPCRLRLPKNPVELA*GGAPSLKTSKAQSQ Trigger: CTGGCTCTGAGCTTTGCTTGTCTTCAGGGATGGAGCCCCTCCCAAGGCAAGTTCAACTGGGTTCTTTGGCAGCCGAAGTCTACACGGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000455460.6 ENST00000649355.1 ENST00000654068.1 ENST00000654711.1 |
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| CDS GCA 72 bp | AAAGCTCAGAGCCAGAAGCAGGGTGTCTTGCAGCTGTaGTGCTCTGCTTGGCAGAAGGAACTCACGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: KAQSQKQGVLQL*CSAWQKELTQQ Trigger: CTGCTGCGTGAGTTCCTTCTGCCAAGCAGAGCAGCACAGCTGCAAGACACCCTGCTTCTGGCTCTGAGCTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000455460.6 ENST00000654711.1 |
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| CDS TCA 72 bp | AGAAGGAACTCACGCAGCAGCAGGTGTGCTATCTGCTaGCTTCAACACACAGAGACGGGGAAGGCTCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: RRNSRSSRCAIC*LQHTETGKALS Trigger: GGACAGAGCCTTCCCCGTCTCTGTGTGTTGAAGTCAGCAGATAGCACACCTGCTGCTGCGTGAGTTCCTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455460.6 |
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| CDS GCA 72 bp | CAGTTCTGCAGGCTGTACAAGCATGGCATTGGCATCTaGTCAGCTTCTGGTGAGGCCTCTGGGAGCTTTTAC | + |
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Preference number: 6 (lower is better) Translates to: QFCRLYKHGIGI*SASGEASGSFY Trigger: GTAAAAGCTCCCAGAGGCCTCACCAGAAGCTGAGCAGATGCCAATGCCATGCTTGTACAGCCTGCAGAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS CAA 72 bp | AGACTTCGGCTGCCAAAGAACCCAGTTGAACTTGCCTaGGGAGGGGCTCCATCCCTGAAGACAAGCAAAGCT | + |
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Preference number: 6 (lower is better) Translates to: RLRLPKNPVELA*GGAPSLKTSKA Trigger: AGCTTTGCTTGTCTTCAGGGATGGAGCCCCTCCCAAGGCAAGTTCAACTGGGTTCTTTGGCAGCCGAAGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000455460.6 ENST00000649355.1 ENST00000654068.1 ENST00000654711.1 |
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| CDS TCA 72 bp | GTACAAGCATGGCATTGGCATCTGCTCAGCTTCTGGTaGGGCCTCTGGGAGCTTTTACTCAAGGCTGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: VQAWHWHLLSFW*GLWELLLKAEG Trigger: ACCTTCAGCCTTGAGTAAAAGCTCCCAGAGGCCTCACCAGAAGCTGAGCAGATGCCAATGCCATGCTTGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS TCA 72 bp | GATCAGGGTGCCAGCAGGGCTGGTTTTTGGTTCCAGTaGGATCTTCCTTCCTGCTTTGCATATGGTCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: DQGASRAGFWFQ*DLPSCFAYGLL Trigger: AAGGAGACCATATGCAAAGCAGGAAGGAAGATCTCACTGGAACCAAAAACCAGCCCTGCTGGCACCCTGATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000420427.2 ENST00000455460.6 ENST00000649355.1 ENST00000654068.1 |
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| CDS TCA 72 bp | GCTGAGAAGCTGAGACCCCTAGAAAAGATGGAGTTCTaGGAAAGGCTAGAAGTCCAAGATCAGGGTGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: AEKLRPLEKMEF*ERLEVQDQGAS Trigger: GCTGGCACCCTGATCTTGGACTTCTAGCCTTTCTCAGAACTCCATCTTTTCTAGGGGTCTCAGCTTCTCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS GCA 72 bp | TTCAACACACAGAGACGGGGAAGGCTCTGTCCTTGCTaGTTGCTCCCTAAGCTTGAATATCTGCCATTCCCT | + |
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Preference number: 6 (lower is better) Translates to: FNTQRRGRLCPC*LLPKLEYLPFP Trigger: AGGGAATGGCAGATATTCAAGCTTAGGGAGCAAGCAGCAAGGACAGAGCCTTCCCCGTCTCTGTGTGTTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455460.6 |
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| CDS GCA 72 bp | GACTTCAACACACAGAGACGGGGAAGGCTCTGTCCTTaGTGCTTGCTCCCTAAGCTTGAATATCTGCCATTC | + |
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Preference number: 6 (lower is better) Translates to: DFNTQRRGRLCP*CLLPKLEYLPF Trigger: GAATGGCAGATATTCAAGCTTAGGGAGCAAGCAGCAAGGACAGAGCCTTCCCCGTCTCTGTGTGTTGAAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000455460.6 |
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| CDS GCA 72 bp | CTCCTCATGATCAATATATTTTTCTCCACCGCTCCCTaGAGGGTCCGTGTAGACTTCGGCTGCCAAAGAACC | + |
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Preference number: 6 (lower is better) Translates to: LLMINIFFSTAP*RVRVDFGCQRT Trigger: GGTTCTTTGGCAGCCGAAGTCTACACGGACCCTGCAGGGAGCGGTGGAGAAAAATATATTGATCATGAGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000654068.1 ENST00000654711.1 |
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| CDS GCA 72 bp | GGAGTTCTGAGAAAGGCTAGAAGTCCAAGATCAGGGTaGCAGCAGGGCTGGTTTTTGGTTCCAGTGAGATCT | + |
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Preference number: 6 (lower is better) Translates to: GVLRKARSPRSG*QQGWFLVPVRS Trigger: AGATCTCACTGGAACCAAAAACCAGCCCTGCTGGCACCCTGATCTTGGACTTCTAGCCTTTCTCAGAACTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS CAA 90 bp | AGAAAGGCTAGAAGTCCAAGATCAGGGTGCCAGCAGGGCTGGTTTTaGGTTCCAGTGAGATCTTCCTTCCTGCTTTGCATATGGTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: RKARSPRSGCQQGWF*VPVRSSFLLCIWSP Trigger: AGGAGACCATATGCAAAGCAGGAAGGAAGATCTCACTGGAACCAAAAACCAGCCCTGCTGGCACCCTGATCTTGGACTTCTAGCCTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000420427.2 ENST00000455460.6 ENST00000649355.1 ENST00000654068.1 |
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| CDS TCA 72 bp | GTTTCCGCATATTGCTTCCCCAACTACTTCTCCGGGTaGGGGGTGAGCCCTCTCCTCATGATCAATATATCT | + |
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Preference number: 6 (lower is better) Translates to: VSAYCFPNYFSG*GVSPLLMINIS Trigger: AGATATATTGATCATGAGGAGAGGGCTCACCCCTCACCCGGAGAAGTAGTTGGGGAAGCAATATGCGGAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000420427.2 ENST00000649355.1 |
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| CDS TCA 72 bp | GTTTCCGCATATTGCTTCCCCAACTACTTCTCCGGGTaGGGGGTGAGCCCTCTCCTCATGATCAATATATTG | + |
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Preference number: 6 (lower is better) Translates to: VSAYCFPNYFSG*GVSPLLMINIL Trigger: CAATATATTGATCATGAGGAGAGGGCTCACCCCTCACCCGGAGAAGTAGTTGGGGAAGCAATATGCGGAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000455460.6 |
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| CDS GCA 72 bp | ACAGTTCTGAGAAAGGCTAGAAGTCCAAGATCAGGGTaGCAGCAGGGCTGGTTTTTGGTTCCAGTGAGATCT | + |
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Preference number: 6 (lower is better) Translates to: TVLRKARSPRSG*QQGWFLVPVRS Trigger: AGATCTCACTGGAACCAAAAACCAGCCCTGCTGGCACCCTGATCTTGGACTTCTAGCCTTTCTCAGAACTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000420427.2 ENST00000455460.6 ENST00000654068.1 |
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| CDS CCA 72 bp | TACAACAAGTCATCAAAGTGGGCACACAGGCCACTTTaGATTCCATGCAACGTTCACAGTGGACACTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: YNKSSKWAHRPL*IPCNVHSGHCS Trigger: GGAGCAGTGTCCACTGTGAACGTTGCATGGAATCCAAAGTGGCCTGTGTGCCCACTTTGATGACTTGTTGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS CAA 72 bp | AGAAGTCCAAGATCAGGGTGCCAGCAGGGCTGGTTTTaGGTTCCAGTGAGATCTTCCTTCCTGCTTTGCATA | + |
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Preference number: 6 (lower is better) Translates to: RSPRSGCQQGWF*VPVRSSFLLCI Trigger: TATGCAAAGCAGGAAGGAAGATCTCACTGGAACCAAAAACCAGCCCTGCTGGCACCCTGATCTTGGACTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000420427.2 ENST00000455460.6 ENST00000649355.1 ENST00000654068.1 |
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| CDS CAA 72 bp | GTACAACAAGTCATCAAAGTGGGCACACAGGCCACTTaGGATTCCATGCAACGTTCACAGTGGACACTGCTC | + |
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Preference number: 6 (lower is better) Translates to: VQQVIKVGTQAT*DSMQRSQWTLL Trigger: GAGCAGTGTCCACTGTGAACGTTGCATGGAATCCAAAGTGGCCTGTGTGCCCACTTTGATGACTTGTTGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS TCA 72 bp | GTTTCCGCATATTGCTTCCCCAACTACTTCTCCGGGTaGGGGGTGAGCCCTCTCCTCATGATCAATATATTT | + |
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Preference number: 6 (lower is better) Translates to: VSAYCFPNYFSG*GVSPLLMINIF Trigger: AAATATATTGATCATGAGGAGAGGGCTCACCCCTCACCCGGAGAAGTAGTTGGGGAAGCAATATGCGGAAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000654068.1 ENST00000654711.1 |
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| CDS CAA 72 bp | CATTTCTTGTCAGATTCATGGCTTTGTTTCCGCATATaGCTTCCCCAACTACTTCTCCGGGTGAGGGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: HFLSDSWLCFRI*LPQLLLRVRGE Trigger: CTCACCCCTCACCCGGAGAAGTAGTTGGGGAAGCAATATGCGGAAACAAAGCCATGAATCTGACAAGAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000420427.2 ENST00000455460.6 ENST00000649355.1 ENST00000654068.1 ENST00000654711.1 |
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| CDS CAA 90 bp | AAGGCGCTAGTACAACAAGTCATCAAAGTGGGCACACAGGCCACTTaGGATTCCATGCAACGTTCACAGTGGACACTGCTCCATTTTGTA | + |
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Preference number: 6 (lower is better) Translates to: KALVQQVIKVGTQAT*DSMQRSQWTLLHFV Trigger: TACAAAATGGAGCAGTGTCCACTGTGAACGTTGCATGGAATCCAAAGTGGCCTGTGTGCCCACTTTGATGACTTGTTGTACTAGCGCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS CAA 90 bp | TGGCTTCCCTTTACCTTAAGTACATTTCTTGTCAGATTCATGGCTTaGTTTCCGCATATTGCTTCCCCAACTACTTCTCCGGGTGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: WLPFTLSTFLVRFMA*FPHIASPTTSPGEG Trigger: CCCCTCACCCGGAGAAGTAGTTGGGGAAGCAATATGCGGAAACAAAGCCATGAATCTGACAAGAAATGTACTTAAGGTAAAGGGAAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS CCA 72 bp | GGTCATTGGTGGAATTCTATCTGTGAGGTCTGTTGTTaGTTTGATCCAAAGGCCAGTGAATGGCAAATGGCA | + |
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Preference number: 6 (lower is better) Translates to: GHWWNSICEVCC*FDPKASEWQMA Trigger: TGCCATTTGCCATTCACTGGCCTTTGGATCAAACCAACAACAGACCTCACAGATAGAATTCCACCAATGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS CCA 72 bp | GATAAAAGCCAAGGAATGCAGGTAGCCTCTAGGATCTaGAAAAGACAAGGAAATGGATTCTTCCTTAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: DKSQGMQVASRI*KRQGNGFFLRV Trigger: GACTCTAAGGAAGAATCCATTTCCTTGTCTTTTCCAGATCCTAGAGGCTACCTGCATTCCTTGGCTTTTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000420427.2 ENST00000455460.6 ENST00000649355.1 |
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| CDS CCA 72 bp | AGGAGCAAGAGAGACAGTCTCTTTGTGAATGGTCATTaGTGGAATTCTATCTGTGAGGTCTGTTGTTGGTTT | + |
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Preference number: 6 (lower is better) Translates to: RSKRDSLFVNGH*WNSICEVCCWF Trigger: AAACCAACAACAGACCTCACAGATAGAATTCCACCAATGACCATTCACAAAGAGACTGTCTCTCTTGCTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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| CDS CAA 90 bp | TCCATATATACAATCTTAAGTACATTTCTTGTCAGATTCATGGCTTaGTTTCCGCATATTGCTTCCCCAACTACTTCTCCGGGTGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: SIYTILSTFLVRFMA*FPHIASPTTSPGEG Trigger: CCCCTCACCCGGAGAAGTAGTTGGGGAAGCAATATGCGGAAACAAAGCCATGAATCTGACAAGAAATGTACTTAAGATTGTATATATGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000420427.2 ENST00000455460.6 ENST00000654068.1 |
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| CDS CAA 90 bp | ATCTTATTACTTACCTTAAGTACATTTCTTGTCAGATTCATGGCTTaGTTTCCGCATATTGCTTCCCCAACTACTTCTCCGGGTGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: ILLLTLSTFLVRFMA*FPHIASPTTSPGEG Trigger: CCCCTCACCCGGAGAAGTAGTTGGGGAAGCAATATGCGGAAACAAAGCCATGAATCTGACAAGAAATGTACTTAAGGTAAGTAATAAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654711.1 |
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| CDS CAA 72 bp | ATTGGTGGAATTCTATCTGTGAGGTCTGTTGTTGGTTaGATCCAAAGGCCAGTGAATGGCAAATGGCATATA | + |
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Preference number: 6 (lower is better) Translates to: IGGILSVRSVVG*IQRPVNGKWHI Trigger: TATATGCCATTTGCCATTCACTGGCCTTTGGATCAAACCAACAACAGACCTCACAGATAGAATTCCACCAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649355.1 |
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