Pregenerated sensors for LINC01496 (Homo sapiens)
Ensembl gene IDs: ENSG00000234766Ensembl transcript IDs: ENST00000656579.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTGAGACTCCCGCAAGGTCACTTGCTGCTCTCTCACCTCTCTCTCTaGTCCTCCTGTCCTCTTGGCCAGGAAATGGCATCCCATCGCCAA | + |
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Preference number: 5 (lower is better) Translates to: VRLPQGHLLLSHLSL*SSCPLGQEMASHRQ Trigger: TTGGCGATGGGATGCCATTTCCTGGCCAAGAGGACAGGAGGACCAGAGAGAGAGGTGAGAGAGCAGCAAGTGACCTTGCGGGAGTCTCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656579.1 |
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| CDS TCA 90 bp | ACATCACACTCTGGGTACACTTTGATTTTTAAAAGACTCCCGCCGTaGGACTCCCGCAAGGTCACTTGCTGCTCTCTCACCTCTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: TSHSGYTLIFKRLPP*DSRKVTCCSLTSLS Trigger: AGAGAGAGAGGTGAGAGAGCAGCAAGTGACCTTGCGGGAGTCTCACGGCGGGAGTCTTTTAAAAATCAAAGTGTACCCAGAGTGTGATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656579.1 |
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| CDS GCA 90 bp | ATAGTAGCCGTAGAGAGAAGAACCCTGAGGTCCCCTGATTTTGGTTaGACCTTTGTCTCTCTCTTACTGGCACTCTGTTGGCATCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: IVAVERRTLRSPDFG*TFVSLLLALCWHQP Trigger: TGGCTGATGCCAACAGAGTGCCAGTAAGAGAGAGACAAAGGTGCAACCAAAATCAGGGGACCTCAGGGTTCTTCTCTCTACGGCTACTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656579.1 |
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| CDS TCA 90 bp | TCCTCATCTCATAGTAGCCGTAGAGAGAAGAACCCTGAGGTCCCCTaGTTTTGGTTGCACCTTTGTCTCTCTCTTACTGGCACTCTGTTG | + |
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Preference number: 5 (lower is better) Translates to: SSSHSSRREKNPEVP*FWLHLCLSLTGTLL Trigger: CAACAGAGTGCCAGTAAGAGAGAGACAAAGGTGCAACCAAAATCAGGGGACCTCAGGGTTCTTCTCTCTACGGCTACTATGAGATGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656579.1 |
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| CDS GCA 90 bp | GAATCACAAATAAAAATGATCCTGTTCCCAAGCACAAGCAATATCTaGACTAACCTAGACCGTAATATGACAAAACGCTGCGGGTCATAT | + |
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Preference number: 5 (lower is better) Translates to: ESQIKMILFPSTSNI*TNLDRNMTKRCGSY Trigger: ATATGACCCGCAGCGTTTTGTCATATTACGGTCTAGGTTAGTGCAGATATTGCTTGTGCTTGGGAACAGGATCATTTTTATTTGTGATTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656579.1 |
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| CDS TCA 90 bp | GCTCCTGACCATATTTTAAAGATGGATGGACAATGGAAGAGCATTTaGAGGAATTCAACACTTGGGATTAAAAACAAACTAAGAGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: APDHILKMDGQWKSI*RNSTLGIKNKLRGW Trigger: CCAGCCTCTTAGTTTGTTTTTAATCCCAAGTGTTGAATTCCTTCAAATGCTCTTCCATTGTCCATCCATCTTTAAAATATGGTCAGGAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656579.1 |
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| CDS GCA 90 bp | ACAGTCCAATTTTCAAATAACAGTTTAGTTCACTTTCCCAGGATCTaGTCAACTCCACTTATACCCAGAATCACAAATAAAAATGATCCT | + |
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Preference number: 5 (lower is better) Translates to: TVQFSNNSLVHFPRI*STPLIPRITNKNDP Trigger: AGGATCATTTTTATTTGTGATTCTGGGTATAAGTGGAGTTGAGCAGATCCTGGGAAAGTGAACTAAACTGTTATTTGAAAATTGGACTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656579.1 |
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| CDS CAA 90 bp | GTCACTTGCTGCTCTCTCACCTCTCTCTCTGGTCCTCCTGTCCTCTaGGCCAGGAAATGGCATCCCATCGCCAAAAATTTAACAACCTGG | + |
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Preference number: 6 (lower is better) Translates to: VTCCSLTSLSGPPVL*ARKWHPIAKNLTTW Trigger: CCAGGTTGTTAAATTTTTGGCGATGGGATGCCATTTCCTGGCCAAGAGGACAGGAGGACCAGAGAGAGAGGTGAGAGAGCAGCAAGTGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000656579.1 |
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| CDS TCA 72 bp | TCTGGGTACACTTTGATTTTTAAAAGACTCCCGCCGTaGGACTCCCGCAAGGTCACTTGCTGCTCTCTCACC | + |
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Preference number: 6 (lower is better) Translates to: SGYTLIFKRLPP*DSRKVTCCSLT Trigger: GGTGAGAGAGCAGCAAGTGACCTTGCGGGAGTCTCACGGCGGGAGTCTTTTAAAAATCAAAGTGTACCCAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656579.1 |
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| CDS GCA 72 bp | GGGAAAACTGCATTACAATCAGGAGCAAGACAAGTCTaGCTACTATCAAAAATGTTATTAAGTATTGTCTTA | + |
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Preference number: 6 (lower is better) Translates to: GKTALQSGARQV*LLSKMLLSIVL Trigger: TAAGACAATACTTAATAACATTTTTGATAGTAGGCAGACTTGTCTTGCTCCTGATTGTAATGCAGTTTTCCC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656579.1 |
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