Pregenerated sensors for LINC01494 (Homo sapiens)
Ensembl gene IDs: ENSG00000228135Ensembl transcript IDs: ENST00000419511.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAAACATCCAGACGCAGAACTCTAAGGTCGGGAGGCCTTTGTGTTTaGACCATCACACGGCGAAGTCTCATGATAGGCCGTCTGCAAGCT | + |
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Preference number: 5 (lower is better) Translates to: KTSRRRTLRSGGLCV*TITRRSLMIGRLQA Trigger: AGCTTGCAGACGGCCTATCATGAGACTTCGCCGTGTGATGGTCCAAACACAAAGGCCTCCCGACCTTAGAGTTCTGCGTCTGGATGTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CCA 90 bp | GTCATTGTTTCTGGAGTGTCATTGTTCCTGGAGTGTCATTGTTTCTaGAGTGTCATTGTTCCTGGAGTGTCATTGTTTCCAGACCTCTCA | + |
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Preference number: 5 (lower is better) Translates to: VIVSGVSLFLECHCF*SVIVPGVSLFPDLS Trigger: TGAGAGGTCTGGAAACAATGACACTCCAGGAACAATGACACTCCAGAAACAATGACACTCCAGGAACAATGACACTCCAGAAACAATGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CCA 90 bp | AGCAAGATGTTCCAGGCTTATCTTGTAATTTCTCTGCCACAGCTCTaGAATCAGCCATTGCTCCAAGGGATGCTTCTTTCTTTTAATAGA | + |
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Preference number: 5 (lower is better) Translates to: SKMFQAYLVISLPQL*NQPLLQGMLLSFNR Trigger: TCTATTAAAAGAAAGAAGCATCCCTTGGAGCAATGGCTGATTCCAGAGCTGTGGCAGAGAAATTACAAGATAAGCCTGGAACATCTTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS TCA 90 bp | AATCAGCCATTGCTCCAAGGGATGCTTCTTTCTTTTAATAGAGAATaGTGTGTAGAAGCCAAGATCTGGGTGCTAGATGTGCTCATTGTT | + |
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Preference number: 5 (lower is better) Translates to: NQPLLQGMLLSFNRE*CVEAKIWVLDVLIV Trigger: AACAATGAGCACATCTAGCACCCAGATCTTGGCTTCTACACATCATTCTCTATTAAAAGAAAGAAGCATCCCTTGGAGCAATGGCTGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS GCA 90 bp | TGCTCAATTTCCCAGATTTTGTCCAGTTGCCAAGCTGGTTTCTATTaGCATAATTCTTTGAGCACTTGCTTACTTTCTGTCACAGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: CSISQILSSCQAGFY*HNSLSTCLLSVTAR Trigger: TCTTGCTGTGACAGAAAGTAAGCAAGTGCTCAAAGAATTATGGCAATAGAAACCAGCTTGGCAACTGGACAAAATCTGGGAAATTGAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CAA 72 bp | CAGACGCAGAACTCTAAGGTCGGGAGGCCTTTGTGTTaGGACCATCACACGGCGAAGTCTCATGATAGGCCG | + |
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Preference number: 6 (lower is better) Translates to: QTQNSKVGRPLC*DHHTAKSHDRP Trigger: CGGCCTATCATGAGACTTCGCCGTGTGATGGTCCAAACACAAAGGCCTCCCGACCTTAGAGTTCTGCGTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CCA 72 bp | AGACGCAGAACTCTAAGGTCGGGAGGCCTTTGTGTTTaGACCATCACACGGCGAAGTCTCATGATAGGCCGT | + |
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Preference number: 6 (lower is better) Translates to: RRRTLRSGGLCV*TITRRSLMIGR Trigger: ACGGCCTATCATGAGACTTCGCCGTGTGATGGTCCAAACACAAAGGCCTCCCGACCTTAGAGTTCTGCGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CCA 72 bp | GCTTCTTCTCAGACTCTCACTGAAGGTGAGGGCACGTaGAGATGTGGGAAGTTCCAGATGAGAGCACACTGT | + |
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Preference number: 6 (lower is better) Translates to: ASSQTLTEGEGT*RCGKFQMRAHC Trigger: ACAGTGTGCTCTCATCTGGAACTTCCCACATCTCCACGTGCCCTCACCTTCAGTGAGAGTCTGAGAAGAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CAA 90 bp | AAAAACATCCAGACGCAGAACTCTAAGGTCGGGAGGCCTTTGTGTTaGGACCATCACACGGCGAAGTCTCATGATAGGCCGTCTGCAAGC | + |
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Preference number: 6 (lower is better) Translates to: KNIQTQNSKVGRPLC*DHHTAKSHDRPSAS Trigger: GCTTGCAGACGGCCTATCATGAGACTTCGCCGTGTGATGGTCCAAACACAAAGGCCTCCCGACCTTAGAGTTCTGCGTCTGGATGTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CAA 90 bp | GTAGCCAAAAACATCCAGACGCAGAACTCTAAGGTCGGGAGGCCTTaGTGTTTGGACCATCACACGGCGAAGTCTCATGATAGGCCGTCT | + |
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Preference number: 6 (lower is better) Translates to: VAKNIQTQNSKVGRP*CLDHHTAKSHDRPS Trigger: AGACGGCCTATCATGAGACTTCGCCGTGTGATGGTCCAAACACAAAGGCCTCCCGACCTTAGAGTTCTGCGTCTGGATGTTTTTGGCTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CAA 72 bp | AACATCCAGACGCAGAACTCTAAGGTCGGGAGGCCTTaGTGTTTGGACCATCACACGGCGAAGTCTCATGAT | + |
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Preference number: 6 (lower is better) Translates to: NIQTQNSKVGRP*CLDHHTAKSHD Trigger: ATCATGAGACTTCGCCGTGTGATGGTCCAAACACAAAGGCCTCCCGACCTTAGAGTTCTGCGTCTGGATGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CAA 90 bp | CTGGAGTGTCATTGTTTCTGGAGTGTCATTGTTCCTGGAGTGTCATaGTTTCCAGACCTCTCAGTGGACAGTCCTCAAGGAGAGAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: LECHCFWSVIVPGVS*FPDLSVDSPQGERD Trigger: ATCTCTCTCTCCTTGAGGACTGTCCACTGAGAGGTCTGGAAACAATGACACTCCAGGAACAATGACACTCCAGAAACAATGACACTCCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CCA 72 bp | AGCCAAGATCTGGGTGCTAGATGTGCTCATTGTTCCTaGAGTGTCATTGTTTCTGGAGTGTCATTGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: SQDLGARCAHCS*SVIVSGVSLFL Trigger: CAGGAACAATGACACTCCAGAAACAATGACACTCCAGGAACAATGAGCACATCTAGCACCCAGATCTTGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CCA 72 bp | CCTGGAGTGTCATTGTTTCTGGAGTGTCATTGTTCCTaGAGTGTCATTGTTTCTGGAGTGTCATTGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: PGVSLFLECHCS*SVIVSGVSLFL Trigger: CAGGAACAATGACACTCCAGAAACAATGACACTCCAGGAACAATGACACTCCAGAAACAATGACACTCCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CCA 72 bp | TTCCAGGCTTATCTTGTAATTTCTCTGCCACAGCTCTaGAATCAGCCATTGCTCCAAGGGATGCTTCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: FQAYLVISLPQL*NQPLLQGMLLS Trigger: AGAAAGAAGCATCCCTTGGAGCAATGGCTGATTCCAGAGCTGTGGCAGAGAAATTACAAGATAAGCCTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CAA 72 bp | TGGGTGCTAGATGTGCTCATTGTTCCTGGAGTGTCATaGTTTCTGGAGTGTCATTGTTCCTGGAGTGTCATT | + |
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Preference number: 6 (lower is better) Translates to: WVLDVLIVPGVS*FLECHCSWSVI Trigger: AATGACACTCCAGGAACAATGACACTCCAGAAACAATGACACTCCAGGAACAATGAGCACATCTAGCACCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CAA 72 bp | CATTGTTTCTGGAGTGTCATTGTTCCTGGAGTGTCATaGTTTCTGGAGTGTCATTGTTCCTGGAGTGTCATT | + |
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Preference number: 6 (lower is better) Translates to: HCFWSVIVPGVS*FLECHCSWSVI Trigger: AATGACACTCCAGGAACAATGACACTCCAGAAACAATGACACTCCAGGAACAATGACACTCCAGAAACAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CAA 90 bp | CAGATTTTGTCCAGTTGCCAAGCTGGTTTCTATTGCCATAATTCTTaGAGCACTTGCTTACTTTCTGTCACAGCAAGATGTTCCAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: QILSSCQAGFYCHNS*STCLLSVTARCSRL Trigger: AAGCCTGGAACATCTTGCTGTGACAGAAAGTAAGCAAGTGCTCAAAGAATTATGGCAATAGAAACCAGCTTGGCAACTGGACAAAATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CAA 72 bp | CTTGTAATTTCTCTGCCACAGCTCTGGAATCAGCCATaGCTCCAAGGGATGCTTCTTTCTTTTAATAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: LVISLPQLWNQP*LQGMLLSFNRE Trigger: TTCTCTATTAAAAGAAAGAAGCATCCCTTGGAGCAATGGCTGATTCCAGAGCTGTGGCAGAGAAATTACAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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| CDS CAA 72 bp | TCCAGTTGCCAAGCTGGTTTCTATTGCCATAATTCTTaGAGCACTTGCTTACTTTCTGTCACAGCAAGATGT | + |
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Preference number: 6 (lower is better) Translates to: SSCQAGFYCHNS*STCLLSVTARC Trigger: ACATCTTGCTGTGACAGAAAGTAAGCAAGTGCTCAAAGAATTATGGCAATAGAAACCAGCTTGGCAACTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419511.1 |
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