Pregenerated sensors for LINC01487 (Homo sapiens)
Ensembl gene IDs: ENSG00000241336Ensembl transcript IDs: ENST00000490497.2, ENST00000655378.1, ENST00000658401.1, ENST00000665154.1, ENST00000669141.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTTAGTTTAGAAGTTGAATACCATGGAGTAAGAGGGGTGGGTGGGTaGGTTGCAGGAGACCTTAGAGGCAGTGCTGGCTCCAGCTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: LSLEVEYHGVRGVGG*VAGDLRGSAGSSCP Trigger: TGGGCAGCTGGAGCCAGCACTGCCTCTAAGGTCTCCTGCAACTCACCCACCCACCCCTCTTACTCCATGGTATTCAACTTCTAAACTAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658401.1 |
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| CDS TCA 90 bp | CTTAGTTTAGAAGTTGAATACCATGGAGTAAGAGGGGTGGGTGGGTaGGTTGCAGGAGACCTTAGAGGCAGTGCTAACTGGCTCCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: LSLEVEYHGVRGVGG*VAGDLRGSANWLQL Trigger: CAGCTGGAGCCAGTTAGCACTGCCTCTAAGGTCTCCTGCAACTCACCCACCCACCCCTCTTACTCCATGGTATTCAACTTCTAAACTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000490497.2 ENST00000655378.1 ENST00000665154.1 ENST00000669141.1 |
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| CDS TCA 90 bp | GGCTTCCTCCAATCTGTGAGTTTCTCAGTCTTGTGCTGTCTTTTGTaGCCTTGTCACTTTTGTAAAGTACTGGTTAAGTATCTTGTAGAC | + |
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Preference number: 5 (lower is better) Translates to: GFLQSVSFSVLCCLL*PCHFCKVLVKYLVD Trigger: GTCTACAAGATACTTAACCAGTACTTTACAAAAGTGACAAGGTCACAAAAGACAGCACAAGACTGAGAAACTCACAGATTGGAGGAAGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000655378.1 ENST00000665154.1 ENST00000669141.1 |
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| CDS TCA 90 bp | CATACTGTATTGGGGGCACATGATATCAACAAGAGTTATTACCAGTaGTTCTGTGATCACTTGGTTAAGTTGCTTTCAGGTTTCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: HTVLGAHDINKSYYQ*FCDHLVKLLSGFSP Trigger: AGGAGAGAAACCTGAAAGCAACTTAACCAAGTGATCACAGAATCACTGGTAATAACTCTTGTTGATATCATGTGCCCCCAATACAGTATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000655378.1 ENST00000665154.1 ENST00000669141.1 |
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| CDS TCA 90 bp | GGCAGCCTGTCCTCCAATTTACTCGACTTAAAAGGCAATCAAGGTTaGTCTCAGCTATTAGTTTCTCTGTTTATTCTTCTCAATATCTCT | + |
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Preference number: 5 (lower is better) Translates to: GSLSSNLLDLKGNQG*SQLLVSLFILLNIS Trigger: AGAGATATTGAGAAGAATAAACAGAGAAACTAATAGCTGAGATCAACCTTGATTGCCTTTTAAGTCGAGTAAATTGGAGGACAGGCTGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655378.1 |
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| CDS CCA 90 bp | AGGATAAATATCACCGAGATGATGGGTCTTTTCATCATACTGTATTaGGGGCACATGATATCAACAAGAGTTATTACCAGTGATTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: RINITEMMGLFIILY*GHMISTRVITSDSV Trigger: CACAGAATCACTGGTAATAACTCTTGTTGATATCATGTGCCCCCAATACAGTATGATGAAAAGACCCATCATCTCGGTGATATTTATCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000655378.1 ENST00000665154.1 ENST00000669141.1 |
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| CDS TCA 72 bp | CTCAGCCATGATGTCTCTTTGGCTTCCTCCAATCTGTaGGTTTCTCAGTCTTGTGCTGTCTTTTGTGACCTT | + |
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Preference number: 6 (lower is better) Translates to: LSHDVSLASSNL*VSQSCAVFCDL Trigger: AAGGTCACAAAAGACAGCACAAGACTGAGAAACTCACAGATTGGAGGAAGCCAAAGAGACATCATGGCTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000655378.1 ENST00000665154.1 ENST00000669141.1 |
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| CDS CCA 72 bp | AAGCAGGTCACTAAGTCTAGCCCACACTCAAGGGGTTaGGAGTTAAGCTTGAACTCAGTTTCTCTGTTTATT | + |
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Preference number: 6 (lower is better) Translates to: KQVTKSSPHSRG*ELSLNSVSLFI Trigger: AATAAACAGAGAAACTGAGTTCAAGCTTAACTCCCAACCCCTTGAGTGTGGGCTAGACTTAGTGACCTGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669141.1 |
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| CDS CAA 72 bp | AGAGCATTCGTCATCACACTGTTCACACTTTCTGGTTaGCAAGCAGTCTTAGAAGAACTAAGATACTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: RAFVITLFTLSG*QAVLEELRYWA Trigger: TGCCCAGTATCTTAGTTCTTCTAAGACTGCTTGCAAACCAGAAAGTGTGAACAGTGTGATGACGAATGCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000655378.1 ENST00000665154.1 |
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| CDS CAA 90 bp | GGGCAGCCTGTCCTCCAATTTACTCGACTTAAAAGGCAATCAAGGTaGATCTCAGCTATTCATTTAGACAGTCCTTCTTTCCAGTTTATG | + |
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Preference number: 6 (lower is better) Translates to: GQPVLQFTRLKRQSR*ISAIHLDSPSFQFM Trigger: CATAAACTGGAAAGAAGGACTGTCTAAATGAATAGCTGAGATCAACCTTGATTGCCTTTTAAGTCGAGTAAATTGGAGGACAGGCTGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665154.1 |
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| CDS CAA 90 bp | GGGCAGCCTGTCCTCCAATTTACTCGACTTAAAAGGCAATCAAGGTaGATCTCAGCTATTAGTTTCTCTGTTTATTCTTCTCAATATCTC | + |
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Preference number: 6 (lower is better) Translates to: GQPVLQFTRLKRQSR*ISAISFSVYSSQYL Trigger: GAGATATTGAGAAGAATAAACAGAGAAACTAATAGCTGAGATCAACCTTGATTGCCTTTTAAGTCGAGTAAATTGGAGGACAGGCTGCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655378.1 |
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| CDS CCA 72 bp | CTTAAGAGCATTCGTCATCACACTGTTCACACTTTCTaGTTTGCAAGCAGTCTTAGAAGAACTAAGATACTG | + |
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Preference number: 6 (lower is better) Translates to: LKSIRHHTVHTF*FASSLRRTKIL Trigger: CAGTATCTTAGTTCTTCTAAGACTGCTTGCAAACCAGAAAGTGTGAACAGTGTGATGACGAATGCTCTTAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000655378.1 ENST00000665154.1 |
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| CDS CCA 72 bp | ATCACCGAGATGATGGGTCTTTTCATCATACTGTATTaGGGGCACATGATATCAACAAGAGTTATTACCAGT | + |
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Preference number: 6 (lower is better) Translates to: ITEMMGLFIILY*GHMISTRVITS Trigger: ACTGGTAATAACTCTTGTTGATATCATGTGCCCCCAATACAGTATGATGAAAAGACCCATCATCTCGGTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000655378.1 ENST00000665154.1 ENST00000669141.1 |
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| CDS CAA 72 bp | TATCACCGAGATGATGGGTCTTTTCATCATACTGTATaGGGGGCACATGATATCAACAAGAGTTATTACCAG | + |
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Preference number: 6 (lower is better) Translates to: YHRDDGSFHHTV*GAHDINKSYYQ Trigger: CTGGTAATAACTCTTGTTGATATCATGTGCCCCCAATACAGTATGATGAAAAGACCCATCATCTCGGTGATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000655378.1 ENST00000665154.1 ENST00000669141.1 |
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| CDS CAA 90 bp | TGTGATCACTTGGTTAAGTTGCTTTCAGGTTTCTCTCCTGTAATGTaGCTATTTTCCTCTTTCCATACTCTATTCCTTAGAAGCAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: CDHLVKLLSGFSPVM*LFSSFHTLFLRSRS Trigger: TGACCTGCTTCTAAGGAATAGAGTATGGAAAGAGGAAAATAGCAACATTACAGGAGAGAAACCTGAAAGCAACTTAACCAAGTGATCACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000655378.1 ENST00000665154.1 ENST00000669141.1 |
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| CDS CAA 72 bp | GTCCTCCAATTTACTCGACTTAAAAGGCAATCAAGGTaGATCTCAGCTATTCATTTAGACAGTCCTTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: VLQFTRLKRQSR*ISAIHLDSPSF Trigger: GAAAGAAGGACTGTCTAAATGAATAGCTGAGATCAACCTTGATTGCCTTTTAAGTCGAGTAAATTGGAGGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665154.1 |
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| CDS TCA 72 bp | CAATCTGTGAGTTTCTCAGTCTTGTGCTGTCTTTTGTaGCCTTGTCACTTTTGTAAAGTACTGGTTAAGTAT | + |
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Preference number: 6 (lower is better) Translates to: QSVSFSVLCCLL*PCHFCKVLVKY Trigger: ATACTTAACCAGTACTTTACAAAAGTGACAAGGTCACAAAAGACAGCACAAGACTGAGAAACTCACAGATTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000655378.1 ENST00000665154.1 ENST00000669141.1 |
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| CDS TCA 72 bp | TCCTCCAATTTACTCGACTTAAAAGGCAATCAAGGTTaGTCTCAGCTATTAGTTTCTCTGTTTATTCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: SSNLLDLKGNQG*SQLLVSLFILL Trigger: GAGAAGAATAAACAGAGAAACTAATAGCTGAGATCAACCTTGATTGCCTTTTAAGTCGAGTAAATTGGAGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655378.1 |
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| CDS CAA 72 bp | GTCCTCCAATTTACTCGACTTAAAAGGCAATCAAGGTaGATCTCAGCTATTAGTTTCTCTGTTTATTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: VLQFTRLKRQSR*ISAISFSVYSS Trigger: AGAAGAATAAACAGAGAAACTAATAGCTGAGATCAACCTTGATTGCCTTTTAAGTCGAGTAAATTGGAGGAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655378.1 |
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