Pregenerated sensors for LINC01477 (Homo sapiens)
Ensembl gene IDs: ENSG00000261715Ensembl transcript IDs: ENST00000566101.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCCATTCCTGTTGGTTATTAGATGTGTCGTTTCCCCTTCTGAGCTaGCATCTACAGTTGCTGATTCTGGTTTCATCGCATACCCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: SHSCWLLDVSFPLLS*HLQLLILVSSHTLR Trigger: CCTGAGGGTATGCGATGAAACCAGAATCAGCAACTGTAGATGGCAGCTCAGAAGGGGAAACGACACATCTAATAACCAACAGGAATGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS TCA 90 bp | TATGTTGGTCAGACTTTCATACAGTATCGTCTTGTCTTTTCCTGTTaGAATTATGGCAGAAGGGGAAGCAAACACATCCTTCTTCACGCG | + |
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Preference number: 5 (lower is better) Translates to: YVGQTFIQYRLVFSC*NYGRRGSKHILLHA Trigger: CGCGTGAAGAAGGATGTGTTTGCTTCCCCTTCTGCCATAATTTCAACAGGAAAAGACAAGACGATACTGTATGAAAGTCTGACCAACATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CCA 72 bp | ACTCATGGTGCCTCAACTCTCCAACATCCTGAGCCTTaGGGGCATCCTTGTAGCACCCTTTATGTTGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: THGASTLQHPEP*GHPCSTLYVGQ Trigger: CTGACCAACATAAAGGGTGCTACAAGGATGCCCCCAAGGCTCAGGATGTTGGAGAGTTGAGGCACCATGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CCA 72 bp | TTGCTGATTCTGGTTTCATCGCATACCCTCAGGCAATaGGTCAGTGGCAACCCAGTGGATCCTCACACCAGA | + |
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Preference number: 6 (lower is better) Translates to: LLILVSSHTLRQ*VSGNPVDPHTR Trigger: TCTGGTGTGAGGATCCACTGGGTTGCCACTGACCCATTGCCTGAGGGTATGCGATGAAACCAGAATCAGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CCA 72 bp | CGCATACCCTCAGGCAATGGGTCAGTGGCAACCCAGTaGATCCTCACACCAGAAGAACTATTCTTCATTCTG | + |
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Preference number: 6 (lower is better) Translates to: RIPSGNGSVATQ*ILTPEELFFIL Trigger: CAGAATGAAGAATAGTTCTTCTGGTGTGAGGATCCACTGGGTTGCCACTGACCCATTGCCTGAGGGTATGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CCA 72 bp | TCTGGTTTCATCGCATACCCTCAGGCAATGGGTCAGTaGCAACCCAGTGGATCCTCACACCAGAAGAACTAT | + |
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Preference number: 6 (lower is better) Translates to: SGFIAYPQAMGQ*QPSGSSHQKNY Trigger: ATAGTTCTTCTGGTGTGAGGATCCACTGGGTTGCCACTGACCCATTGCCTGAGGGTATGCGATGAAACCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CAA 72 bp | GATGTGTCGTTTCCCCTTCTGAGCTGCCATCTACAGTaGCTGATTCTGGTTTCATCGCATACCCTCAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: DVSFPLLSCHLQ*LILVSSHTLRQ Trigger: TTGCCTGAGGGTATGCGATGAAACCAGAATCAGCAACTGTAGATGGCAGCTCAGAAGGGGAAACGACACATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CAA 90 bp | TGGTTATTAGATGTGTCGTTTCCCCTTCTGAGCTGCCATCTACAGTaGCTGATTCTGGTTTCATCGCATACCCTCAGGCAATGGGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: WLLDVSFPLLSCHLQ*LILVSSHTLRQWVS Trigger: ACTGACCCATTGCCTGAGGGTATGCGATGAAACCAGAATCAGCAACTGTAGATGGCAGCTCAGAAGGGGAAACGACACATCTAATAACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CAA 72 bp | CTGAGCCTTGGGGGCATCCTTGTAGCACCCTTTATGTaGGTCAGACTTTCATACAGTATCGTCTTGTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: LSLGGILVAPFM*VRLSYSIVLSF Trigger: AAAAGACAAGACGATACTGTATGAAAGTCTGACCAACATAAAGGGTGCTACAAGGATGCCCCCAAGGCTCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CAA 90 bp | TTATGTTGGTCAGACTTTCATACAGTATCGTCTTGTCTTTTCCTGTaGAAATTATGGCAGAAGGGGAAGCAAACACATCCTTCTTCACGC | + |
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Preference number: 6 (lower is better) Translates to: LCWSDFHTVSSCLFL*KLWQKGKQTHPSSR Trigger: GCGTGAAGAAGGATGTGTTTGCTTCCCCTTCTGCCATAATTTCAACAGGAAAAGACAAGACGATACTGTATGAAAGTCTGACCAACATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CAA 90 bp | CTTGTAGCACCCTTTATGTTGGTCAGACTTTCATACAGTATCGTCTaGTCTTTTCCTGTTGAAATTATGGCAGAAGGGGAAGCAAACACA | + |
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Preference number: 6 (lower is better) Translates to: LVAPFMLVRLSYSIV*SFPVEIMAEGEANT Trigger: TGTGTTTGCTTCCCCTTCTGCCATAATTTCAACAGGAAAAGACAAGACGATACTGTATGAAAGTCTGACCAACATAAAGGGTGCTACAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CAA 72 bp | CCCTTTATGTTGGTCAGACTTTCATACAGTATCGTCTaGTCTTTTCCTGTTGAAATTATGGCAGAAGGGGAA | + |
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Preference number: 6 (lower is better) Translates to: PFMLVRLSYSIV*SFPVEIMAEGE Trigger: TTCCCCTTCTGCCATAATTTCAACAGGAAAAGACAAGACGATACTGTATGAAAGTCTGACCAACATAAAGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CCA 72 bp | TCTATGTATTTGAAAGTAGCCATTCACCACCTCCTGTaGAGAAGTACCAATAAAGTGCAAAACCATTATCAC | + |
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Preference number: 6 (lower is better) Translates to: SMYLKVAIHHLL*RSTNKVQNHYH Trigger: GTGATAATGGTTTTGCACTTTATTGGTACTTCTCCACAGGAGGTGGTGAATGGCTACTTTCAAATACATAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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| CDS CAA 72 bp | ACAAAATGGAATGAAAAACTGTCTGATGAGCTAGACTaGAGGCAGGAGGACAGGCATCATATATCTTATTGT | + |
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Preference number: 6 (lower is better) Translates to: TKWNEKLSDELD*RQEDRHHISYC Trigger: ACAATAAGATATATGATGCCTGTCCTCCTGCCTCAAGTCTAGCTCATCAGACAGTTTTTCATTCCATTTTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000566101.1 |
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