Pregenerated sensors for LINC01475 (Homo sapiens)
Ensembl gene IDs: ENSG00000257582Ensembl transcript IDs: ENST00000548010.1, ENST00000552096.5
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTCTTCGCTAGGGCCCCAGGCCCTTGGCGGGCGGATGGAGAGAGATaGCCCAGGAAAAAGCCCAGCACTGCTAGGCCCTACGTGCACGGG | + |
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Preference number: 5 (lower is better) Translates to: LFARAPGPWRADGER*PRKKPSTARPYVHG Trigger: CCCGTGCACGTAGGGCCTAGCAGTGCTGGGCTTTTTCCTGGGGCATCTCTCTCCATCCGCCCGCCAAGGGCCTGGGGCCCTAGCGAAGAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000552096.5 |
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| CDS CCA 90 bp | GGGGATCGCTCTCCCAGTGCCGACCGAAGGCCCGGACCTCCAGGCTaGACGCGGCGAAGGCCGCATAAGACGTTACTTAAACATGTTACT | + |
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Preference number: 5 (lower is better) Translates to: GDRSPSADRRPGPPG*TRRRPHKTLLKHVT Trigger: AGTAACATGTTTAAGTAACGTCTTATGCGGCCTTCGCCGCGTCCAGCCTGGAGGTCCGGGCCTTCGGTCGGCACTGGGAGAGCGATCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS CCA 90 bp | TCAATAGTTTCAGGATTTAAAGCAGAAAGACACCGGGCGCCCCTGTaGCTGAGGAATGGCGGTTCCAGCACAAGACCCTGCCCACAGAGG | + |
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Preference number: 5 (lower is better) Translates to: SIVSGFKAERHRAPL*LRNGGSSTRPCPQR Trigger: CCTCTGTGGGCAGGGTCTTGTGCTGGAACCGCCATTCCTCAGCCACAGGGGCGCCCGGTGTCTTTCTGCTTTAAATCCTGAAACTATTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS GCA 90 bp | GAAGGCCGCATAAGACGTTACTTAAACATGTTACTTAAACAAGACTaGAGTAAACGTTTCTTTCCAAGTGAGAAAGGTCTTTTTCGTTCT | + |
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Preference number: 5 (lower is better) Translates to: EGRIRRYLNMLLKQD*SKRFFPSEKGLFRS Trigger: AGAACGAAAAAGACCTTTCTCACTTGGAAAGAAACGTTTACTGCAGTCTTGTTTAAGTAACATGTTTAAGTAACGTCTTATGCGGCCTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS CAA 90 bp | AGCAGCCCTGGCCGTCCGCTGACGCAGCGAAGGTCTAGCGGAACCTaGGGGATCGCTCTCCCAGTGCCGACCGAAGGCCCGGACCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: SSPGRPLTQRRSSGT*GIALPVPTEGPDLQ Trigger: CTGGAGGTCCGGGCCTTCGGTCGGCACTGGGAGAGCGATCCCCAAGGTTCCGCTAGACCTTCGCTGCGTCAGCGGACGGCCAGGGCTGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS CAA 72 bp | GGCCGTCCGCTGACGCAGCGAAGGTCTAGCGGAACCTaGGGGATCGCTCTCCCAGTGCCGACCGAAGGCCCG | + |
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Preference number: 6 (lower is better) Translates to: GRPLTQRRSSGT*GIALPVPTEGP Trigger: CGGGCCTTCGGTCGGCACTGGGAGAGCGATCCCCAAGGTTCCGCTAGACCTTCGCTGCGTCAGCGGACGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS GCA 72 bp | GAAGGTCTAGCGGAACCTTGGGGATCGCTCTCCCAGTaGCGACCGAAGGCCCGGACCTCCAGGCTGGACGCG | + |
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Preference number: 6 (lower is better) Translates to: EGLAEPWGSLSQ*RPKARTSRLDA Trigger: CGCGTCCAGCCTGGAGGTCCGGGCCTTCGGTCGGCACTGGGAGAGCGATCCCCAAGGTTCCGCTAGACCTTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS CCA 72 bp | AGCAGAAAGACACCGGGCGCCCCTGTGGCTGAGGAATaGCGGTTCCAGCACAAGACCCTGCCCACAGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: SRKTPGAPVAEE*RFQHKTLPTEG Trigger: ACCCTCTGTGGGCAGGGTCTTGTGCTGGAACCGCCATTCCTCAGCCACAGGGGCGCCCGGTGTCTTTCTGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS CCA 72 bp | TCTCCCAGTGCCGACCGAAGGCCCGGACCTCCAGGCTaGACGCGGCGAAGGCCGCATAAGACGTTACTTAAA | + |
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Preference number: 6 (lower is better) Translates to: SPSADRRPGPPG*TRRRPHKTLLK Trigger: TTTAAGTAACGTCTTATGCGGCCTTCGCCGCGTCCAGCCTGGAGGTCCGGGCCTTCGGTCGGCACTGGGAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS TCA 72 bp | GATTTAAAGCAGAAAGACACCGGGCGCCCCTGTGGCTaGGGAATGGCGGTTCCAGCACAAGACCCTGCCCAC | + |
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Preference number: 6 (lower is better) Translates to: DLKQKDTGRPCG*GMAVPAQDPAH Trigger: GTGGGCAGGGTCTTGTGCTGGAACCGCCATTCCTCAGCCACAGGGGCGCCCGGTGTCTTTCTGCTTTAAATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS CCA 72 bp | TCAGGATTTAAAGCAGAAAGACACCGGGCGCCCCTGTaGCTGAGGAATGGCGGTTCCAGCACAAGACCCTGC | + |
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Preference number: 6 (lower is better) Translates to: SGFKAERHRAPL*LRNGGSSTRPC Trigger: GCAGGGTCTTGTGCTGGAACCGCCATTCCTCAGCCACAGGGGCGCCCGGTGTCTTTCTGCTTTAAATCCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS TCA 72 bp | TCGTTCTCAGACGGTTTGAAGGTGTTTGTGCCAACGTaGCCCCCGGGGAGATTTGGAGGAAGCTTTCTACGT | + |
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Preference number: 6 (lower is better) Translates to: SFSDGLKVFVPT*PPGRFGGSFLR Trigger: ACGTAGAAAGCTTCCTCCAAATCTCCCCGGGGGTCACGTTGGCACAAACACCTTCAAACCGTCTGAGAACGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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| CDS CCA 72 bp | CACATTCTCAGCAAGGACCGCCTGGTTTGTAGACACTaGTCTCCGCCTGGGGCGTCAATAGTTTCAGGATTT | + |
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Preference number: 6 (lower is better) Translates to: HILSKDRLVCRH*SPPGASIVSGF Trigger: AAATCCTGAAACTATTGACGCCCCAGGCGGAGACCAGTGTCTACAAACCAGGCGGTCCTTGCTGAGAATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548010.1 |
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